cel-mir-49
| absolute | CE1 |
| cel-mir-49 5arm | 3 |
| cel-mir-49 3arm | 13 |
| normalized | CE1 |
| cel-mir-49 5arm | 0.002 |
| cel-mir-49 3arm | 0.009 |
sblock77 (miRBase cel-mir-49) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-49 | 0.002 | no | no | 0.52/0.58 | 19/23/0.82 | 0.0 0.0 | 0.0 0.5 | 3 13 | 0 0 | 1 1 | 0 0 | 20 16 | 4 5 | 5arm 3arm | 1 1 | nd nd | 0.17 0.10 | 2 1 | 16 | 1 | 1 | 1 |
| Member of family miR-49/83 (seed AGCACCA): cel-mir-49, cel-mir-83 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------AGCA--------CCA--------------------------------------------------- | 13 | miR-49/83 |
| seed | --------------------------------------GCAG-UUU---------------------------------------------------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------------------------AAGCA--------CCACGAGAAGCTGCAG-------------------------------------- | 21 | 10 | |
| -------------------------------------CGCAG-TTTGTTGTGATGTGCTCC------------------------------------------------------------------------------------- | 23 | 3 | |
| -------------------------------------------------------------------------------AAGCA--------CCACGAGAAGCTGC---------------------------------------- | 19 | 3 | |
| cel-miR-49 | -------------------------------------------------------------------------------AAGCA--------CCACGAGAAGCTGCAGA------------------------------------- | 22 | - |
| celegans | ---------------TTTTGAAAAAG--ACCACCGTCCGCAG-TTTGTTGTGATGTGCTCCAAGCAATC-ATGAGTCTGAAGCA--------CCACGAGAAGCTGCAGATGGAG-----------------GTTCTGATTT----- | ||
| cbriggsae | ---------TATTTGAACCGAAACCA--TTTGCCATCCGCAG-TTTTTTGTAGTGTGCTCCGCGCCATCTTAGTGCCCGAAGCA--------CCACGAGAAGCTGCAGATGGAA-----------------GTTTTGGTTGATGTG | ||
| cjaponica | GGCAAGGTAAGTTTGCTCCGAAGCCGTCACTTCCATCCGCAGTTTTTTTGTGCTGTGCTCCGAACC--C-GAGTGGTCGAAGCA--------CCACGAGAAGCTGCAGATGGGATGAGAGCGGCGATTTGTGTTTTGTTTTGTT-- | ||
| cbrenneri | -----------TGAGTTTAGAAACAG--TTGGCCGTCCGCGGTTTTTTTGTGTAGTGCTCCGCACCATC-GAGTGTTCGAAGCA--------CCACGAGAAGCTGCAGATGGAG-----------AAGCTTGTTTCCGTTCTTA-- | ||
| ppacificus | -------------------------------------TGCAG----TTTATGAGATTTCCAACAAAAAT-GAATGAATAATTCAAATGAAATCTTAAGGAAACTGCA--------------------------------------- | ||
| cremanei | ------------------------------------CCGCAG-TTTCTTATGATGTGCTCCGAGCCAAC-ATGTGTTCGAAGCA--------CCACGAGAAGCTGCAG-------------------------------------- | ||
| ** * ** * * * * * ** * *** ***** | |||
| celegans | ..........( (((.(((((.(((( (((.(((((..(((((.((..(.... ....)..)).)))) )))))).))))))).))))).) )))....... | 1.000 -38.50 | |
| cbriggsae | ......(((((((((.. ....(((((.(((( ((((((((.((((.....((((.......)))).....))) ).)))))))))))).))))).. )))))))))...... | 0.995 -43.40 | |
| cjaponica | .((((..((((..(((......(((((((.(((((((.((((.(((((((((..(((((.((.((( . ....))))).)))) )))))))))))))).)))))))))...))))).....))).))))..)))). | 0.972 -50.20 | |
| cbrenneri | ((((....((((((( ((..(((((.((((.(((((((((..(((((.(((((.... ..)))..)).)))) )))))))))))))).))))).. .)))).)))))....)))) | 0.998 -40.90 | |
| ppacificus | .(((( (((.(((((((((.........( ((((.....)))))...)))))))))...))))))). | 0.833 -18.30 | |
| cremanei | ..(((( (((((..((..(((((.(((((((.. .)).))))).)))) )))..))))))))).. | 1.000 -29.70 |
| celegans | chromosome:X:9989216:9989312:1 | intergenic ## {SimpF: WRM062cG02 -1 fosmid,WRM0636bB03 -1 fosmid,WRM069bG05 -1 fosmid,WRM0618aC08 1 fosmid} ## {MIR: cel-mir-49} |
| cbriggsae | chromosome:chrX:3590180:3590288:-1 | Same_strand|Intronic_coding|NM_001027419 ## Opposite_strand|Intronic_coding|NM_181874 ## {MIR: cbr-mir-49} |
| cjaponica | chromosome:chrUn:761221:761353:1 | intergenic |
| cbrenneri | chromosome:chrUn:21067423:21067533:-1 | intergenic |
| ppacificus | chromosome:chrUn:113208891:113209027:1 | Opposite_strand|Intronic_coding|NM_076149 |
| cremanei | chromosome:chrUn:14818084:14818220:-1 | intergenic |
©2008 InteRNA Genomics B.V.