cel-mir-83
| absolute | CE1 |
| cel-mir-83 5arm | 2 |
| cel-mir-83 3arm | 88 |
| normalized | CE1 |
| cel-mir-83 5arm | 0.001 |
| cel-mir-83 3arm | 0.061 |
sblock46 (miRBase cel-mir-83) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-83 | 0.008 | no | no | 0.27/0.32 | 19/22/0.95 | 0.0 0.0 | 0.0 0.0 | 2 81 | 0 0 | 1 1 | 0 0 | 16 18 | 5 9 | 5arm 3arm | 1 1 | nd nd | 0.14 0.10 | 1 1 | 90 | 1 | 1 | 0 |
| Member of family miR-49/83 (seed AGCACCA): cel-mir-49, cel-mir-83 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------AGCACCA------------------------------- | 88 | miR-49/83 |
| seed | -----------------CUGAAUU---------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------TAGCACCAT-ATAAATTCAGT------------------ | 20 | 81 | |
| -------------------------------------------------------------TAGCACCAT-ATAAATTCAG------------------- | 19 | 5 | |
| ----------------ACTGAATTTATGTGTGTACTT-G------------------------------------------------------------- | 22 | 2 | |
| cel-miR-83 | -------------------------------------------------------------TAGCACCAT-ATAAATTCAGTAA---------------- | 22 | 1 |
| -------------------------------------------------------------TAGCACCAT-ATAAATTCAGTA----------------- | 21 | 1 | |
| celegans | AGCACCACTCGGAACCACTGAATTTATGTGTGTACTT-GACGGCCAACAAGAGCATCGATCTAGCACCAT-ATAAATTCAGTAATTTCGCGTCGAGAGCT | ||
| cbriggsae | ----------------ACTGAGTTTATGTGTGTACTT-GACGGCG-ATCAGAGCAACGATCTAGCACCAT-ATAAATTCAGT------------------ | ||
| cjaponica | ----------------ACTGAGTTTACGTGTGTGCTT-GACGGCCTTCTCGAGCAACGATCTAGCACCAT-ATAAATTCAGT------------------ | ||
| cbrenneri | ---------CGGAAAAACTGAGTTTATTTGAGTACTTAGACGGCC-ATTAGAGCAACGATCTAGCACCAT-ATAAATTCAGTATTTTCGTGGATGA---- | ||
| ppacificus | --------ACGGTACCATTG---CTCTCTGTGCTTTGGGAC--------AGATCAA------AGCACCATAATGATTACGGT------------------ | ||
| cremanei | ---------CGGAAAAACTGAGTTTATGTGTGTACTT-GACGGCC-ACTCGAGCAACGATCTAGCACCAT-ATAAATTCAGTATTTTCGTGGAGAGAG-- | ||
| * ** * ** * * *** ** ** ******** ** * * * ** | |||
| celegans | (((.((((.(((((..((((((((((((((.((.((. ((((((........))..)).)).)).))))) )))))))))))..))))).)).).).))) | 1.000 -28.50 | |
| cbriggsae | ((((((((((((((.((.((. ((((((. ......))..)).)).)).))))) ))))))))))) | 0.975 -20.70 | |
| cjaponica | ((((((((((..((.(((((. ((((..(((...)))...)).)).))))))). .)))))))))) | 1.000 -22.80 | |
| cbrenneri | ((((((.(((((((((((.((.((.((.(((((((. ......))..)).))))).)))). ))))))))))).))))))....... | 0.995 -22.70 | |
| ppacificus | ((.(((.((((( ......(((((((((... ...)))) )))))..)))))..))).)) | 0.983 -14.40 | |
| cremanei | ((((((.((((((((((((((.((.((. ((((((. ......))..)).)).)).))))) ))))))))))).))))))......... | 0.985 -25.90 |
| celegans | chromosome:IV:7841614:7841711:1 | intergenic ## {SimpF: WRM0633aF09 1 fosmid,WRM0620aE05 1 fosmid,WRM0616bH10 1 fosmid,WRM0621cH03 1 fosmid,WRM061bD09 1 fosmid,WRM0635cG10 1 fosmid} ## {MIR: cel-mir-83} |
| cbriggsae | chromosome:chrIV:10882730:10882867:-1 | Opposite_strand|Intronic_coding|NM_001014737 ## Same_strand|Intronic_coding|NM_001030400 ## {MIR: cbr-mir-83} |
| cjaponica | chromosome:chrUn:113084146:113084283:-1 | intergenic ## {SimpF: trf} |
| cbrenneri | chromosome:chrUn:82234152:82234236:-1 | Same_strand|Intronic_coding|NM_001083844 |
| ppacificus | chromosome:chrUn:173961248:173961385:1 | Opposite_strand|Intronic_coding|NM_067212 |
| cremanei | chromosome:chrUn:43807341:43807426:-1 | intergenic |
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