cel-mir-75
| absolute | CE1 |
| cel-mir-75 5arm | 1 |
| cel-mir-75 3arm | 32 |
| normalized | CE1 |
| cel-mir-75 5arm | 0.001 |
| cel-mir-75 3arm | 0.022 |
sblock72 (miRBase cel-mir-75) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-75 | 0.001 | no | no | 0.43/0.48 | 21/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 32 | 0 0 | 1 1 | 0 0 | 22 16 | 4 6 | 5arm 3arm | 1 1 | nd nd | 0.14 0.19 | 2 2 | 33 | 1 | 1 | 1 |
| Member of family miR-75/79 (seed UAAAGCU): cel-mir-75, cel-mir-79 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------UAAAGCU------------------------------------------------- | 32 | miR-75/79 |
| seed | --------------------------------------AGUCGGU--------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTC------------------------------------ | 21 | 32 | |
| -------------------------------------CAGTCGGTTGCAAGCTTAAAT-------------------------------------------------------------------------------- | 21 | 1 | |
| cel-miR-75 | ---------------------------------------------------------------------------------TTAAAGCTACCAACCGGCTTCA----------------------------------- | 22 | - |
| celegans | ---------------TTCTTGTTGCTTTGAAGAATTGCAGTCGGTTGCAAGCTTAAATACAAATCCGAA------TTGTTATTAAAGCTACCAACCGGCTTCAAGTCTGAAAGAGCAG-------------------- | ||
| cbriggsae | ------------------------------------GCAGTCGGTTGCAAGCTTCAATACAGAC---AATGGTTCTTGATATTAAAGCTACCAACCGCCTTC------------------------------------ | ||
| cjaponica | ------------------------------------GCAGTCGGTTGCAAGCTTAAATACAGAC---AA------TAGTTATTAAAGCTACCAACCGGCTCC------------------------------------ | ||
| cbrenneri | GCTCTGCTATTTTTGTTAATCCTGCCTCGACGAGTTGAGGTCGGTTGCAAGCTTCAATACATTTATGAA-----ATTGATATTAAAGCTACCAACCGGCTTCAAATCGAAAAGTGCGTGTTTGTTCAAAGAAGTGAGT | ||
| cremanei | ------CTTATTTTTGACCACATGCATTGATGAGTTGAAGTCGGTTATAAGCTTAAATACAGAA---CATACCCGTTGTTATTAAAGCTACCAACCGACTTCAGATCATACTTTGCATACTTTTACAAAGGTAAG--- | ||
| * ******* ****** ****** * * * ****************** ** * | |||
| celegans | .......((((((..(((.(((.(((((((((..(((((.(((((((....... ))).)))).)))))..))))))))).))).)))...)))))). | 1.000 -33.60 | |
| cbriggsae | ..((.((((((..(((((.((((((((( ....)))..)).)))).)))))..)))))).)).. | 1.000 -16.10 | |
| cjaponica | ..(((((((((..(((((.(((((.... .. ..)).))).)))))..))))))))).. | 1.000 -18.80 | |
| cbrenneri | ((((.(((.((((((.(((...(((((...(((.(((((((((((((..(((((.((((((.((....) ).)).)))).)))))..))))))))))))).)))...)).)))...)))..))))))))))))) | 0.999 -41.30 | |
| cremanei | ((((((((((.....(((((...((((.((((((((((((...(((((.((((...(( (......)))..)))).)))))...)))))))))))).))))....))))).......)))))))))) | 0.998 -40.30 |
| celegans | chromosome:X:2372448:2372544:1 | intergenic ## {SimpF: WRM0640dB08 1 fosmid,WRM0614bE04 1 fosmid,WRM0611cC07 1 fosmid,WRM0624bG04 1 fosmid,WRM0639bG12 1 fosmid,WRM067cD10 1 fosmid,WRM0612dD05 1 fosmid,WRM0620aG05 1 fosmid,WRM064dH03 1 fosmid,WRM0617aH11 1 fosmid} ## {MIR: cel-mir-75} |
| cbriggsae | chromosome:chrX:4486694:4486830:-1 | Opposite_strand|Intronic_coding|NM_001087279 ## Same_strand|Intronic_coding|NM_001109816 ## {MIR: cbr-mir-75} |
| cjaponica | chromosome:chrUn:6839235:6839371:1 | intergenic |
| cbrenneri | chromosome:chrUn:1025855:1025987:-1 | intergenic |
| cremanei | chromosome:chrUn:103833694:103833819:-1 | intergenic |
©2008 InteRNA Genomics B.V.