cel-mir-79
| absolute | CE1 |
| cel-mir-79 5arm | 178 |
| cel-mir-79 3arm | 1424 |
| normalized | CE1 |
| cel-mir-79 5arm | 0.124 |
| cel-mir-79 3arm | 0.995 |
sblock8 (miRBase cel-mir-79) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-79 | 0.001 | no | no | 0.32/0.44 | 18/25/0.95 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 120 2 1271 | 0 0 0 | 1 1 1 | 0 0 0 | 18 41 15 | 6 -14 9 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.18 0.53 0.18 | 2 5 2 | 1602 | 1 | 1 | 2 |
| Member of family miR-75/79 (seed UAAAGCU): cel-mir-75, cel-mir-79 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------UAAAGCU--------------------------------------------- | 1395 | miR-75/79 |
| seed | ----------------------------------UUUGGUG------------------------------------------------------------------------------------------- | 157 | novel |
| seed | ------------------------------------------------------------------------------------GCUAGGU----------------------------------------- | 14 | novel |
| seed | ---------------------------------------------------------------------------------AAAGCUA-------------------------------------------- | 13 | novel |
| seed | -----------------------------------UUGGUGA------------------------------------------------------------------------------------------ | 10 | novel |
| seed | ---------------------------------CUUUGGU-------------------------------------------------------------------------------------------- | 9 | miR-244 |
| seed | -----------------------------------------------------------------------------------AGCUAGG------------------------------------------ | 2 | novel |
| seed | ---------------------------------------------------------UGGCUAC-------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-79 | -------------------------------------------------------------------------------ATAAAGCTAGGTTACCAAAGCT------------------------------- | 22 | 1271 |
| ---------------------------------CTTTGGTGATTCAGCTTCAATG----------------------------------------------------------------------------- | 22 | 120 | |
| -------------------------------------------------------------------------------ATAAAGCTAGGTTACCAAAGC-------------------------------- | 21 | 99 | |
| ---------------------------------CTTTGGTGATTCAGCTTCA-------------------------------------------------------------------------------- | 19 | 24 | |
| -------------------------------------------------------------------------------ATAAAGCTAGGTTACCAA----------------------------------- | 18 | 15 | |
| -----------------------------------------------------------------------------------AGCTAGGTTACCAAAGCT------------------------------- | 18 | 14 | |
| --------------------------------------------------------------------------------TAAAGCTAGGTTACCAAAGCT------------------------------- | 21 | 13 | |
| ---------------------------------CTTTGGTGATTCAGCTTC--------------------------------------------------------------------------------- | 18 | 9 | |
| -------------------------------------------------------------------------------ATAAAGCTAGGTTACCAAAG--------------------------------- | 20 | 7 | |
| --------------------------------TCTTTGGTGATTCAGCTTCAATG----------------------------------------------------------------------------- | 23 | 7 | |
| ----------------------------------TTTGGTGATTCAGCTTCA-------------------------------------------------------------------------------- | 18 | 5 | |
| ----------------------------------TTTGGTGATTCAGCTTCAATGA---------------------------------------------------------------------------- | 22 | 3 | |
| ---------------------------------CTTTGGTGATTCAGCTTCAATGATT-------------------------------------------------------------------------- | 25 | 3 | |
| --------------------------------------------------------TTGGCTACA----GGTTTCTTTC----------------------------------------------------- | 19 | 2 | |
| ----------------------------------------------------------------------------------AAGCTAGGTTACCAAAGCT------------------------------- | 19 | 2 | |
| -------------------------------------------------------------------------------ATAAAGCTAGGTTACCAAAGCTC------------------------------ | 23 | 2 | |
| --------------------------------TCTTTGGTGATTCAGCTTCA-------------------------------------------------------------------------------- | 20 | 2 | |
| ----------------------------------TTTGGTGATTCAGCTTCAATG----------------------------------------------------------------------------- | 21 | 2 | |
| -------------------------------------------------------------------------------ATAAAGCTAGGTTACCAAA---------------------------------- | 19 | 1 | |
| ---------------------------------CTTTGGTGATTCAGCTTCAAT------------------------------------------------------------------------------ | 21 | 1 | |
| celegans | TAGTAGACATTCT---------------CCGATCTTTGGTGATTCAGCTTCAATGATTGGCTACA----GGTTTCTTTCATAAAGCTAGGTTACCAAAGCTCGGCGTCTTG--------------ATCTA-- | ||
| cbriggsae | ----GAACATTCT---------------CCGATCTTTGGTGATTCAGCTTAAATGATAGAAT-TCAGACGT----CTTCATAAAGCTAGGTTACCAAAGCTCGGCGTTCCA--------------GTTC--- | ||
| ppacificus | -----------------------------CG--CTTTGGTTATCTTGCTTT-CTGACTAAATGTCCAAGG------TTCATAAAGCTAGGTTACCAAAGCT------------------------------- | ||
| cjaponica | --GGTAACGTTTTGCGATGAGTGAGCTGCCGACCTTTGGTGATTAAGCTTAAATGATCGGCC-------GTGTTGTTTCATAAAGCTAGGTTACCAAAGCTCGGCGGTCGAAACCATACATATTTGTTTACC | ||
| cbrenneri | --AGATATGGTT----------------CCGAACTTTGGTGATTCAGTTTTAATGATTGACGATTCAACGTTTT-CTTCATAAAGCTAGGTTACCAAAGCTCGGCGCTTCA-------------TGTCT--- | ||
| cremanei | --------GTTT----------------CCGATCTTTGGTGATTCAGCTTAAATGATAGACT-CAATATGTTAGACTTCATAAAGCTAGGTTACCAAAGCTCGGCGGCCGA--------------ATCTATC | ||
| ** ******* ** * ** *** * ************************* | |||
| celegans | ...((((((..(. ((((.((((((((((..(((((..((((..(((.... .)))....)))).)))))..)))))))))).)))).)...)) .)))) | 1.000 -33.30 | |
| cbriggsae | ((((..... ((((.((((((((((..(((((..((((.(((.. .......) )))))).)))))..)))))))))).)))).)))).. .... | 0.985 -30.20 | |
| ppacificus | .( (((((((.((((.((((( .(((((..........)) ).)).))))).)))).)))))))). | 1.000 -23.10 | |
| cjaponica | (((((((.......(((.((..((((((((.((((((((((..(((((..((((.((((. ..))))..)))).)))))..)))))))))).))))))))....))))).......)))).))) | 0.920 -44.14 | |
| cbrenneri | (((((((((. ((((.((((((((((..((((((.((((..((((......)))).. ..))))))))))..)))))))))).)))).))..)) ))))) | 1.000 -39.10 | |
| cremanei | ((.. ((((.((((((((((..(((((..((((..(((. ......))).....)))).)))))..)))))))))).))))..))... ....... | 0.913 -30.80 |
| celegans | chromosome:I:9332937:9333033:1 | intergenic ## {SimpF: WRM0622dD07 1 fosmid,WRM0632aG06 1 fosmid,WRM064dG06 1 fosmid,WRM0625cA09 1 fosmid} ## {MIR: cel-mir-79} |
| cbriggsae | chromosome:chrI:1376275:1376365:1 | Same_strand|Intronic_coding|NM_001011629 ## Opposite_strand|Intronic_coding|NM_067080 ## {MIR: cbr-mir-79} |
| ppacificus | chromosome:chrUn:79886581:79886717:1 | intergenic |
| cjaponica | chromosome:chrUn:79311330:79311452:-1 | Opposite_strand|Intronic_coding|NM_001027065 |
| cbrenneri | chromosome:chrUn:27772761:27772857:-1 | intergenic |
| cremanei | chromosome:chrUn:105203826:105203918:1 | intergenic |
©2008 InteRNA Genomics B.V.