cel-mir-790
| absolute | CE1 |
| cel-mir-790 5arm | 41 |
| cel-mir-790 3arm | 3 |
| normalized | CE1 |
| cel-mir-790 5arm | 0.029 |
| cel-mir-790 3arm | 0.002 |
sblock45 (miRBase cel-mir-790) [miRNAknown_RNA_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-790 | 0.001 | T12E12.9|ncRNA|21ur-1430| | no | 0.52/0.68 | 19/24/0.98 | 0.0 0.7 | 0.0 2.7 | 35 3 | 0 0 | 1 1 | 0 0 | 5 3 | 1 2 | 5arm_loop 3arm | 1 1 | nd nd | 0.18 0.26 | 2 3 | 44 | 1 | 1 | 2 |
| Member of family miR-790/791 (seed UUGGCAC): cel-mir-791, cel-mir-790 |
| reads | miRBase family seed | ||
| seed | -------------------UUGGCAC---------------------------------------------------------------------------- | 41 | miR-790/791 |
| seed | --------------------------------------------------------------GGCGUUA--------------------------------- | 2 | novel |
| seed | -------------------------------------------------------------CGGCGUU---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-790 | ------------------CTTGGCACTCGCGAACACCGCG-------------------------------------------------------------- | 22 | 35 |
| ------------------CTTGGCACTCGCGAACACCGC--------------------------------------------------------------- | 21 | 5 | |
| -------------------------------------------------------------CGGCGTTAGCTCTGTGTCAAACC------------------ | 23 | 1 | |
| ------------------CTTGGCACTCGCGAACACCGCGAT------------------------------------------------------------ | 24 | 1 | |
| ------------------------------------------------------------GCGGCGTTAGCTCTGTGTC----------------------- | 19 | 1 | |
| -------------------------------------------------------------CGGCGTTAGCTCTGTGTCAAA-------------------- | 21 | 1 | |
| celegans | -------------GCCGGCTTGGCACTCGCGAACACCGCGATTT-CACTTATAAC---TCGCGGCGTTAGCTCTGTGTCAAACCGGC--------------- | ||
| cbriggsae | AAGTCCC--TTCCGATTGCTTGGCACTCGCGAACACCGCGATCACTTCCAATATCGATCCGCGGAGTTAGCCA-GTGTCAACCAAATGGATGTTTGAGACTT | ||
| cjaponica | -AGTCCC--TCCAAACTGCTTGGCACTCGCGAACACCGCGCTTCACAACTAAAAGATGTCGCGGCGTTGGCTTGGTGCCAAACAGGATGAGAGTTTGAGACT | ||
| cbrenneri | AAGGTCCCGTTCTACCTGCTTGGCACTCGCGAACACCGCGATCTAACTGTATAAA---TCGCGGCGTTAGCTC-GTGGCAAACAGGTGATGCTGAAGACTTT | ||
| cremanei | ------------------CTTGGCACTCGCGAACACCGCGATCTTATCAGATAAA---TCGCGGAGTTAGCCG-GTGGCAACCAGG---------------- | ||
| ********************** * * * ***** *** ** *** *** * | |||
| ..... ......>>>>>>>>>>>>>>>>>>>>>.... .......... ............................. ..... | T12E12.9 T12E12.9 21ur-1430 | ||
| celegans | (((((.(((((((..((.(((.((((((... .......... )))))).))).))...))))))).))))) | 1.000 -34.22 | |
| cbriggsae | (((((.. .((((.(((.((((((((.((.(((.((((((((............)))).)))).))).)).) ))))))).))).)))).......))))) | 0.997 -35.60 | |
| cjaponica | ((((.( ((((..(((.((((((((.((.(((.(((((..((..........))...))))).))).))..)))))))).)))..)).))).....)))) | 0.999 -38.90 | |
| cbrenneri | ((((((..((..((((((.(((.(((..((.(((.(((((((.((......)).) )))))).))).)).. ))).))).))))))..))....)))))) | 1.000 -38.30 | |
| cremanei | .(((.((((.((.(((.(((((((.((((...))))) )))))).))).)).) ))).)))..... | 1.000 -24.70 |
| celegans | chromosome:IV:5566409:5566478:1 | Same_strand|Boundary_non-coding|T12E12.9|T12E12.9 ## intergenic ## T12E12.9|ncRNA|21ur-1430| ## {SimpF: WRM0630cD06 1 fosmid,WRM0628dC05 1 fosmid,WRM069aH08 1 fosmid,WRM063bD03 1 fosmid,WRM0625cE08 1 fosmid,WRM0626cB03 1 fosmid} ## {MIR: cel-mir-790} |
| cbriggsae | chromosome:chrIV:8548022:8548120:-1 | Same_strand|Intronic_coding|NM_066961 ## {MIR: cbr-mir-790-1} |
| cjaponica | chromosome:chrUn:34737985:34738083:1 | intergenic |
| cbrenneri | chromosome:chrUn:70276206:70276303:-1 | intergenic |
| cremanei | chromosome:chrUn:60545935:60546044:-1 | intergenic |
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