sblock65_cand
| absolute | CE1 |
| sblock65_cand 5arm | 0.833 |
| sblock65_cand 3arm | 22.500 |
| normalized | CE1 |
| sblock65_cand 5arm | 0.001 |
| sblock65_cand 3arm | 0.016 |
sblock65 [novel_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.59 | 18/23/0.96 | 1.0 1.0 | 1.0 0.7 | 2 25 | 0 0 | 1 1 | 0 0 | 19 16 | 9 7 | 5arm 3arm | 3 3 | nd nd | 0.00 0.00 | 0 0 | 49 | 1 | -1 | 1 |
| Member of family novel3 (seed CCGGCCC): sblock65_cand, sblock79_cand |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------GUAUUAA---------------------------------------------------- | 23 | novel |
| seed | ---------------------------------------------------------------------------------AUGUAUU------------------------------------------------------ | 7 | novel |
| seed | -------------------------------------------------------------------------------------AUUAAAC-------------------------------------------------- | 7 | novel |
| seed | ---------------------------------------------------------------------------------------UAAACGG------------------------------------------------ | 5 | novel |
| seed | ------------------------------------------------------------------------------------UAUUAAA--------------------------------------------------- | 4 | novel |
| seed | ---------------------CCGGCCC------------------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | -----------------------GGCCCU----------------U------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------------------------------------------UUAAACG------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------------TGTATTAAACGGTA------------------AGGGCCGGC------------------- | 23 | 11 | |
| ----------------------------------------------------------------------------------TGTATTAAACGGTA------------------AGGGCCGG-------------------- | 22 | 6 | |
| ------------------------------------------------------------------------------------TATTAAACGGTA------------------AGGGCCGGCT------------------ | 22 | 4 | |
| --------------------------------------------------------------------------------------TTAAACGGTA------------------AGGGCCGGCTG----------------- | 21 | 4 | |
| ----------------------------------------------------------------------------------TGTATTAAACGGTA------------------AGGGCCG--------------------- | 21 | 3 | |
| ----------------------------------------------------------------------------------TGTATTAAACGGTA------------------AGGGCC---------------------- | 20 | 3 | |
| --------------------------------------------------------------------------------CATGTATTAAACGGTA------------------AGGGC----------------------- | 21 | 3 | |
| -----------------------------------------------------------------------------------GTATTAAACGGTA------------------AGGGCCGGC------------------- | 22 | 3 | |
| ------------------------------------------------------------------------------------TATTAAACGGTA------------------AGGGCCGGCTG----------------- | 23 | 2 | |
| --------------------------------------------------------------------------------CATGTATTAAACGGTA------------------AGGGCC---------------------- | 22 | 2 | |
| --------------------------------------------------------------------------------CATGTATTAAACGGTA------------------AGGGCCG--------------------- | 23 | 2 | |
| ----------------------CGGCCCT----------------TACCGTTTAAT-------------------------------------------------------------------------------------- | 18 | 1 | |
| -----------------------------------------------------------------------------------GTATTAAACGGTA------------------AGGGCCGGCT------------------ | 23 | 1 | |
| --------------------------------------------------------------------------------------TTAAACGGTA------------------AGGGCCGGCTGG---------------- | 22 | 1 | |
| -------------------------------------------------------------------------------------ATTAAACGGTA------------------AGGGCCGGCTGG---------------- | 23 | 1 | |
| ------------------------------------------------------------------------------------TATTAAACGGTA------------------AGGGCC---------------------- | 18 | 1 | |
| --------------------GCCGGCCCT----------------TACCGTTTAATAC------------------------------------------------------------------------------------ | 22 | 1 | |
| celegans | -AAATGAATGTAAAGCCCCAGCCGGCCCT----------------TACCGTTTAATACATGTTCC---CGGTCGATGCACCATGTATTAAACGGTA------------------AGGGCCGGCTGGGGCTTTACAACATTT- | ||
| cremanei | ACAGAGAACGC---GTTATATTAGGTTGTTCAGGTCATGTAAAGGTGTAATTAAATACACCGTTCGTGAATAAGGTGAAATATGTATTAAAATGCATTTTTACATGACCTGAATAAGCTCATCACTAGCTTTTTATTACTGT | ||
| cbriggsae | ---------------CATTTGTTGGCGTTGGCGGT----------TGCGGTTGAAA---------------TAGTTCAAAACTGTATTAAACTCCA-------------------AGCCCAAGTG----------------- | ||
| cjaponica | ---------------TGGAAACCGGTTTTTTTGT-----------AACCGGTGGAAACCGGTTTC---TACCGGTTTTCACCGGTATTAAAAAACA-----------------------------CCGGTTTTTA------- | ||
| ** * * * * * ******** * | |||
| ----- ---------------------------- -------------------- ---------------------------- --------------------------- ----- | F55F3.1.1 F55F3.1 aakb-1 | ||
| celegans | (((((..((((((((((((((((((((( ((((((((((((((((.... ((.....))...)))))))))))))))) ))))))))))))))))))))).))))) | 1.000 -73.00 | |
| cremanei | ((((((((.(( ........((.((((((((((((((((((((((((.((.((((((...((((.........))))...)))))).)).)))))))))))))))))))))))).))........)).))))....)))) | 0.989 -46.29 | |
| cbriggsae | ((((((..(((.((((.((( ((((((((((. ...))))..))))))....)))))) )))))))))) | 1.000 -18.50 | |
| cjaponica | ((((((((((((((((((. .((((((((((((((((... .))))))))))))))))..))))))).) )))))))))) | 1.000 -46.10 |
| celegans | chromosome:X:13759150:13759252:-1 | Opposite_strand|Boundary_non-coding|F55F3.1.2|F55F3.1 ## Opposite_strand|Intronic_non-coding|F55F3.1.1|F55F3.1 ## F55F3.1|protein_coding|aakb-1|AMP-Activated Kinase Beta subunit family member (aakb-1) [Source:RefSeq_peptide;Acc:NP_510298] ## {SimpF: WRM0635dA09 -1 fosmid,WRM0620cB06 -1 fosmid,WRM0641dG10 -1 fosmid,WRM0622bA08 -1 fosmid} |
| cremanei | chromosome:chrUn:93758642:93758780:-1 | intergenic |
| cbriggsae | chromosome:chrX:7209357:7209499:-1 | Opposite_strand|Intronic_coding|NM_178660 |
| cjaponica | chromosome:chrUn:80799570:80799712:-1 | intergenic ## {SimpF: trf,trf} |
©2008 InteRNA Genomics B.V.