sblock79_cand
| absolute | CE1 |
| sblock79_cand 5arm | 0.833 |
| sblock79_cand 3arm | 22.500 |
| normalized | CE1 |
| sblock79_cand 5arm | 0.001 |
| sblock79_cand 3arm | 0.016 |
sblock79 [novel_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.59 | 18/23/0.96 | 1.0 1.0 | 1.0 0.7 | 2 25 | 0 0 | 1 1 | 0 0 | 25 27 | 10 7 | 5arm 3arm | 3 3 | nd nd | 0.00 0.00 | 0 0 | 49 | 1 | -1 | 1 |
| Member of family novel3 (seed CCGGCCC): sblock65_cand, sblock79_cand |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------------------------------GUAUUAA--------------------------------------------------------------- | 23 | novel |
| seed | -----------------------------------------------------------------------------------------------------AUGUAUU----------------------------------------------------------------- | 7 | novel |
| seed | ---------------------------------------------------------------------------------------------------------AUUAAAC------------------------------------------------------------- | 7 | novel |
| seed | -----------------------------------------------------------------------------------------------------------UAAACGG----------------------------------------------------------- | 5 | novel |
| seed | --------------------------------------------------------------------------------------------------------UAUUAAA-------------------------------------------------------------- | 4 | novel |
| seed | ----------------------------------------------------------------------------------------------------------UUAAACG------------------------------------------------------------ | 1 | novel |
| seed | -----------------------------------CCGGCCC----------------------------------------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------GGCCCUU--------------------------------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------------------------------------------------------------------TGTATTAAACGGTAAG-------GGCCGGC----------------------------------------- | 23 | 11 | |
| ------------------------------------------------------------------------------------------------------TGTATTAAACGGTAAG-------GGCCGG------------------------------------------ | 22 | 6 | |
| --------------------------------------------------------------------------------------------------------TATTAAACGGTAAG-------GGCCGGCT---------------------------------------- | 22 | 4 | |
| ----------------------------------------------------------------------------------------------------------TTAAACGGTAAG-------GGCCGGCTG--------------------------------------- | 21 | 4 | |
| ------------------------------------------------------------------------------------------------------TGTATTAAACGGTAAG-------GGCCG------------------------------------------- | 21 | 3 | |
| -------------------------------------------------------------------------------------------------------GTATTAAACGGTAAG-------GGCCGGC----------------------------------------- | 22 | 3 | |
| ------------------------------------------------------------------------------------------------------TGTATTAAACGGTAAG-------GGCC-------------------------------------------- | 20 | 3 | |
| ----------------------------------------------------------------------------------------------------CATGTATTAAACGGTAAG-------GGC--------------------------------------------- | 21 | 3 | |
| ----------------------------------------------------------------------------------------------------CATGTATTAAACGGTAAG-------GGCC-------------------------------------------- | 22 | 2 | |
| ----------------------------------------------------------------------------------------------------CATGTATTAAACGGTAAG-------GGCCG------------------------------------------- | 23 | 2 | |
| --------------------------------------------------------------------------------------------------------TATTAAACGGTAAG-------GGCCGGCTG--------------------------------------- | 23 | 2 | |
| ---------------------------------------------------------------------------------------------------------ATTAAACGGTAAG-------GGCCGGCTGG-------------------------------------- | 23 | 1 | |
| ------------------------------------CGGCCCTT------ACCGT----------------TTAAT------------------------------------------------------------------------------------------------- | 18 | 1 | |
| --------------------------------------------------------------------------------------------------------TATTAAACGGTAAG-------GGCC-------------------------------------------- | 18 | 1 | |
| -------------------------------------------------------------------------------------------------------GTATTAAACGGTAAG-------GGCCGGCT---------------------------------------- | 23 | 1 | |
| ----------------------------------------------------------------------------------------------------------TTAAACGGTAAG-------GGCCGGCTGG-------------------------------------- | 22 | 1 | |
| ----------------------------------GCCGGCCCTT------ACCGT----------------TTAATAC----------------------------------------------------------------------------------------------- | 22 | 1 | |
| celegans | ---------ATTTAGGAAATGTTGTAAAGCCCCAGCCGGCCCTT------ACCGT----------------TTAATACATGGTGCATCGACCGGG---AACATGTATTAAACGGTAAG-------GGCCGGCTGGGGCTTTACATTCATTTATTGTTAGAA------------ | ||
| cremanei | TTGAGTCTTACAGAGAACGCGTTAT--------ATTAGGTTGTT------CAGGTCATGTAAAGGTGTAATTAAATACACCGTTCGTGAATAAGGTGAAATATGTATTAAAATGCATTTTTACATGACCTGAATAAGCTCATCACTAGCTTTTTATTACTGTTTTAGACTTAA | ||
| cbriggsae | ---------------CATTTGTTGG--------CGTTGGCGGTT------GCGGT-------------------------------TGAAATAGTTCAAAACTGTATTAAACTCCAAGCCCAAGTG----------------------------------------------- | ||
| cjaponica | ----------------ACCGGTGGA--------AACCGGTTTTTTTGTAACCGGT-------------------GGAAACCGGTT-TCTACCGGTTTTCACCGGTATTAAAAAACA-----------------------------CCGGTTTTTATCGGT------------- | ||
| * ** ** ** ** * * * * ******** * | |||
| +++++ +++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++ ++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++ +++++ | F55F3.1.1 F55F3.1 aakb-1 | ||
| celegans | .(((((.(((((.(((((((((((((((((((((( ((((( ((((((((((.....((....)). ..)))))))))))))))))) )))))))))))))))))))..)))))....))))). | 1.000 -77.60 | |
| cremanei | .(((((((.((((((((.((..... ...((.((((( (((((((((((((((((((.((.((((((...((((.........))))...)))))).)).)))))))))))))))))))))))).))........)).))))....))))...))))))). | 0.989 -55.69 | |
| cbriggsae | ((((((..(( (.((((.(((( ((((( ((((....))))..))))))....)))))))))))))))) | 1.000 -18.50 | |
| cjaponica | ((((((((( ((((((((((((((..(((((( ((((((((((. ...))))))))))))))))..))))))).) ))))))))))))))) | 1.000 -56.90 |
| celegans | chromosome:X:13759143:13759262:1 | Same_strand|Intronic_non-coding|F55F3.1.1|F55F3.1 ## Same_strand|Boundary_non-coding|F55F3.1.2|F55F3.1 ## F55F3.1|protein_coding|aakb-1|AMP-Activated Kinase Beta subunit family member (aakb-1) [Source:RefSeq_peptide;Acc:NP_510298] ## {SimpF: WRM0622bA08 1 fosmid,WRM0635dA09 1 fosmid,WRM0620cB06 1 fosmid,WRM0641dG10 1 fosmid} |
| cremanei | chromosome:chrUn:93758631:93758789:-1 | intergenic |
| cbriggsae | chromosome:chrX:7209346:7209505:-1 | Opposite_strand|Intronic_coding|NM_178660 |
| cjaponica | chromosome:chrUn:121223588:121223674:1 | intergenic ## {SimpF: trf,trf} |
©2008 InteRNA Genomics B.V.