candidate novel miRNAs
novel_cloningOK_shortStem_randfoldOK (1 loci)
novel_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK (1 loci)
sblock26_cand
| absolute | AF16 |
| sblock26_cand 5arm | 31 |
| sblock26_cand 3arm | 2 |
| normalized | AF16 |
| sblock26_cand 5arm | 0.081 |
| sblock26_cand 3arm | 0.005 |
sblock26 [novel_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.24/0.39 | 18/25/0.15 | 0.0 0.0 | 0.0 0.0 | 27 2 | 0 0 | 1 1 | 0 0 | 12 12 | 8 6 | 5arm 3arm | 1 1 | nd nd | 0.20 0.13 | 3 1 | 33 | 1 | 1 | 3 |
| Located in cluster 4: cel-mir-65, sblock26_cand, block1267_novel, cbr-mir-64, sblock28_novel |
| Member of family miR-64 (seed AUGACAC): cel-mir-65, cbr-mir-64, sblock28_novel, sblock26_cand |
| reads | miRBase family seed | ||
| seed | -------------AUGACAC------------------------------------------------------------------------------ | 31 | miR-64 |
| seed | -------------------------------------------------------------UGCUCAU------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------TATGACACTGTTTAAATGAAACAGG------------------------------------------------------------- | 25 | 27 | |
| ------------------------------------------------------------CTGCTCATTTCAGTGTCATTGAT--------------- | 23 | 2 | |
| ------------TATGACACTGTTTAAATGAAAC---------------------------------------------------------------- | 22 | 2 | |
| ------------TATGACACTGTTTAAATG-------------------------------------------------------------------- | 18 | 1 | |
| ------------TATGACACTGTTTAAATGAAA----------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | GAACTCACCATCTATGACACTGTTTAAATGAAACAGGACTTTCTCTAACACACCGGGTTCCTGCTCATTTCAGTGTCATTGATT---GGTTTGATTCT | ||
| cbrenneri | ------------TATGACAC--TTTGATTCAA-------TTT---------------TTCTTGTTAATTCCACAAAAACTGAATCAAAGTGTTATT-- | ||
| ******** *** * * ** *** *** ** * *** ** * *** * ** * *** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ | NM_001102902 | ||
| ----------------------------------------------------------------------------------------- ---------------- | NM_001077612 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ | NM_065190 | ||
| ----------------------------------------------------------------------------------------- ---------------- | NM_001129219 | ||
| cbriggsae | (((.((((((((.(((((((((...((((((..(((((....(((.........))).))))).))))))))))))))).))). )))..))))). | 1.000 -29.20 | |
| cbrenneri | .((((((( (((((((((. ((( ((..((.......)).))))).)))))))))))))))). | 1.000 -20.00 |
| cbriggsae | chromosome:chrIII:218656:218750:-1 | Same_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Opposite_strand|Intronic_coding|NM_001077612|zgc:153009 ## Opposite_strand|Intronic_non-coding|NM_001129219|nhr-121 ## {Repeats: no} |
| cbrenneri | chromosome:chrUn:87393394:87393528:1 | intergenic |
novel_rep_cloningHIGH_multiarm_DicerOK_randfoldOK (1 loci)
sblock2_cand
| absolute | AF16 |
| sblock2_cand 5arm | 3 |
| sblock2_cand 3arm | 5751 |
| normalized | AF16 |
| sblock2_cand 5arm | 0.008 |
| sblock2_cand 3arm | 14.992 |
sblock2 [novel_rep_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | DNA | 0.41/0.56 | 18/24/0.98 | 0.0 0.0 | 0.0 0.0 | 3 5130 | 0 0 | 1 1 | 0 0 | 14 13 | 18 15 | 5arm 3arm | 1 1 | nd nd | 0.09 0.13 | 1 1 | 5754 | 1 | 2 | 2 |
| Member of family miR-43 (seed AUCACAG): cbr-mir-43, sblock2_cand |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------------------------------------AUCACAG----------------------------------------------------- | 5450 | miR-43 |
| seed | -----------------------------------------------------------------------------------------------------------------UCACAG-----C----------------------------------------------- | 187 | novel |
| seed | --------------------------------------------------------------------------------------------------------------------CAG-----CCAG-------------------------------------------- | 84 | novel |
| seed | ---------------------------------------------------------------------------------------------------------------UAUCACA------------------------------------------------------ | 29 | novel |
| seed | --------------------------------------------CGUCAAA------------------------------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | ---------------------------------------------------------------------------------------------------------------------AG-----CCAGC------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------------------------------------------------TATCACAG-----CCAGCTTTGATGTGC--------------------------------- | 23 | 5130 | |
| ---------------------------------------------------------------------------------------------------------------TATCACAG-----CCAGCTTTGATGTG---------------------------------- | 22 | 279 | |
| ----------------------------------------------------------------------------------------------------------------ATCACAG-----CCAGCTTTGATGTGC--------------------------------- | 22 | 163 | |
| -------------------------------------------------------------------------------------------------------------------ACAG-----CCAGCTTTGATGTGC--------------------------------- | 19 | 77 | |
| ----------------------------------------------------------------------------------------------------------------ATCACAG-----CCAGCTTTGATGTG---------------------------------- | 21 | 20 | |
| ---------------------------------------------------------------------------------------------------------------TATCACAG-----CCAGCTTTGA-------------------------------------- | 18 | 16 | |
| --------------------------------------------------------------------------------------------------------------ATATCACAG-----CCAGCTTTGATGTGC--------------------------------- | 24 | 13 | |
| --------------------------------------------------------------------------------------------------------------ATATCACAG-----CCAGCTTTGATGTG---------------------------------- | 23 | 12 | |
| ---------------------------------------------------------------------------------------------------------------TATCACAG-----CCAGCTTTGATGT----------------------------------- | 21 | 10 | |
| ---------------------------------------------------------------------------------------------------------------TATCACAG-----CCAGCTTTGAT------------------------------------- | 19 | 8 | |
| -------------------------------------------------------------------------------------------------------------------ACAG-----CCAGCTTTGATGTG---------------------------------- | 18 | 7 | |
| ---------------------------------------------------------------------------------------------------------------TATCACAG-----CCAGCTTTGATGTGCT-------------------------------- | 24 | 6 | |
| --------------------------------------------------------------------------------------------------------------ATATCACAG-----CCAGCTTTG--------------------------------------- | 18 | 3 | |
| -------------------------------------------CCGTCAAAGTGGTG-----TGTGTTATG----------------------------------------------------------------------------------------------------- | 23 | 3 | |
| ----------------------------------------------------------------------------------------------------------------ATCACAG-----CCAGCTTTGAT------------------------------------- | 18 | 2 | |
| ----------------------------------------------------------------------------------------------------------------ATCACAG-----CCAGCTTTGATGT----------------------------------- | 20 | 1 | |
| --------------------------------------------------------------------------------------------------------------ATATCACAG-----CCAGCTTTGATGT----------------------------------- | 22 | 1 | |
| --------------------------------------------------------------------------------------------------------------------CAG-----CCAGCTTTGATGTGC--------------------------------- | 18 | 1 | |
| ----------------------------------------------------------------------------------------------------------------ATCACAG-----CCAGCTTTGATGTGCT-------------------------------- | 23 | 1 | |
| ---------------------------------------------------------------------------------------------------------------TATCACAG-----CCAGCTTTGATG------------------------------------ | 20 | 1 | |
| cbriggsae | ----------------TCTACAG-------------AGAAAGCCCGTCAAAGTGGTG-----TGTGTTATGCCGCATAAGTGAACTTCTTTTCGGAAGTTTTGGTTC---ATATCACAG-----CCAGCTTTGATGTGCTGTCTTGTATAGA-------------------- | ||
| cremanei | --------------ATAGTATAC-------------GGAAAGCCCGTCAAAGTGGCT-----CGTGTTATGTTGAA----------TCTT----GAAGT----AATC---ATATCACAG-----CCAGCTTTGATGTGCTTCCTGAAGTACTAT------------------ | ||
| celegans | AAGACAAATGCAAAATTCTTGTT-------------AAAAAGTAATTGAAAATGAGTAAAACTGTGAAATATACTAATTTCAGGCTTGTT----GCCGTCGGAACTCAGAATATCACAGTTTTACTCATTTTCAATTACTTTTTAACA-AAAATGTTGCATTTGTCTT---- | ||
| cbrenneri | ---ACGGATTCTGATTTCCATGTACGGTGAACCTCCAGAAAGCACGTCAAAGTGGCG-----CGTGTTATGTCGGAAATATGA-----------AAAG-----GATC---ATATCACAG-----CCAGCTTTGATGTGCTTGACTGTGTTCAGTGATGAAATTTCGGTTTGT | ||
| **** * *** ** *** ** * * ** ********* * *** * * ** | |||
| +++++ +++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++ | NM_002035 | ||
| +++++ +++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++ | NM_177366 | ||
| ----- ------- --------------------- --------------------------------------------- --------- ---------------------------- ----- | NM_001107428 | ||
| ----- ------- --------------------- --------------------------------------------- --------- ---------------------------- ----- | NM_214177 | ||
| ----- ------- --------------------- --------------------------------------------- --------- ---------------------------- ----- | NM_001011629 | ||
| ----- ------- --------------------- --------------------------------------------- --------- ---------------------------- ----- | NM_058481 | ||
| ----- ------- --------------------- --------------------------------------------- --------- ---------------------------- ----- | NM_014920 | ||
| ----- ------- --------------------- --------------------------------------------- --------- ---------------------------- ----- | NM_058496 | ||
| +++++ +++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++ | NM_001047248 | ||
| +++++ +++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++ | NM_001047247 | ||
| ----- ------- --------------------- --------------------------------------------- --------- ---------------------------- ----- | NM_016513 | ||
| +++++ +++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++ | NM_059707 | ||
| ----- ------- --------------------- --------------------------------------------- --------- ---------------------------- ----- | NM_000087 | ||
| +++++ +++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++ | NM_010301 | ||
| +++++ +++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++ | NM_001026219 | ||
| +++++ +++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++ | NM_001026218 | ||
| +++++ +++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++ | NM_001026217 | ||
| +++++ +++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++++++++++++++++++++++ +++++ | NM_001128984 | ||
| cbriggsae | ((((..( (((.(((.((((((((((((. ((((.(((((((.......((((((((....)))))))))))..) ))).))))) ))).)))))))).))).))))...)))) | 0.960 -38.71 | |
| cremanei | (((((((.( ((.((((.((((((((((((( .(((.((((..... .... ..... ...) ))).))))) ))).)))))))).)))).)))..))))))) | 1.000 -35.03 | |
| celegans | (((((((((((((.(((.((((( (((((((((((((((((((((((((((((((..(((.((...(((.(((..... )))....)))...)).)))))))))))))))))))))))))))))))))))))) ).))).))))))))))))) | 0.948 -74.40 | |
| cbrenneri | (((((((..((((((...((.((.(((((...(((.(((((((((((((((((. .(((.((((((.......... .... )).) ))).))).) ))).)))))))))))))..))).))))).))))))))))..))))))) | 0.967 -48.74 |
| cbriggsae | chromosome:chrI:2240952:2241061:-1 | Same_strand|Intronic_non-coding|NM_002035|KDSR ## Opposite_strand|Intronic_non-coding|NM_001107428|Zfp612 ## Opposite_strand|Intronic_coding|NM_214177|CNG-1 ## Same_strand|Intronic_coding|NM_001047247|Y73E7A.1 ## {Repeats: no} |
| cremanei | chromosome:chrUn:83423082:83423177:-1 | Same_strand|Intronic_coding|NM_001026219 |
| celegans | chromosome:chrI:3468788:3468937:1 | Same_strand|Intronic_coding|Y47G6A.10 ## {Repeats: CELE46B -62 643 -1 class=DNA} |
| cbrenneri | chromosome:chrUn:28728398:28728537:1 | Same_strand|Intronic_coding|NM_001026219 |
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