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miR-Intess™


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candidate novel loci of miRBase miRNAs

miRBaseNonMapped_randfoldOK (1 loci)

cel-mir-66-as

Cloning frequencies
absoluteCE1
cel-mir-66-as 5arm2
normalizedCE1
cel-mir-66-as 5arm0.001
cel-mir-66-as relative cloning frequencies

block2812 (Antisense miRBase cel-mir-66-as) [miRBaseNonMapped_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBaseAS cel-mir-66-as0.001nono0.38/0.3821/21/1.000.0
0.0
2
0
1
0
14
9
5arm
1
nd
0.24
2
21nana
block2812 hairpin
  readsmiRBase family seed
seed---------------UUUGACA-----------------------------------------------------------------------------------------------------2novel
  lencloning frequencies
   CE1
 --------------GTTTGACACCGTTAGGAATTT----------------------------------------------------------------------------------------212
celegansACCACATACGCCATGTTTGACACCGTTAGGAATTTGATCGGGATCTTAACATTCATCACATCCCTAATCAGTGTCATGT-----------------------------ATGGCATTTTTGTGG 
cremanei--------------GTTTGACACCG--AAAGACTGGTTAATA----TAACA---ACTAATTGAATCAGCACT------------------------------------TTTGTGTTCAGGT-- 
cbrenneri--------------GTTTGACAGCG--G----------TATG----CATGA---ACTTCTTCCATGTTCTATAACATAT-----------------------------TTGATGTCATAAC-- 
cjaponica------------CAGGTTGACAAAT--GACAATTTGACAAGT----TGACA---ATTTGACAACTGACAATCGACAAGTTGACGAGTTGTCAAGTTGACAAGTGACAATTGACAATTTG---- 
               * ******                            *   *         *                                            *              
celegans.(((((...((((((..((((((.((((((.((.((((..((((......)))))))).)).))))))..))))))..)                             ))))).....)))))1.000 -32.90
cremanei              .(((((((.((  ((((.((((((...(    (....   ....))..))))))..))                                    ))))))).)))).  0.999 -11.40
cbrenneri              ...(((((..(  (          ((((    ...((   ((.........)))).....)))))                             )...)))))....  0.995 -11.40
cjaponica            (((((((.(((.(  (...(((((.(((.(    (((((   (((((.(((((...........))))).))))))))))).))).)))))..)).))).)))))))    1.000 -32.50

celeganschromosome:III:2173096:2173189:-1intergenic ## {ASMIR: cel-mir-66-as}
cremaneichromosome:chrUn:118324006:118324139:-1intergenic
cbrennerichromosome:chrUn:178336571:178336704:1intergenic
cjaponicachromosome:chrUn:121445966:121446063:1Opposite_strand|Intronic_coding|NM_001083163 ## {SimpF: trf,trf,trf,trf}


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