candidate novel miRNAs
novel_cloningHIGH_multiarm_DicerNOK_randfoldOK (2 loci)
novel_mirtron_randfoldOK (1 loci)
block8180_cand
| absolute | CE1 |
| block8180_cand 3arm | 1 |
| normalized | CE1 |
| block8180_cand 3arm | 0.001 |
block8180 [novel_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.45/0.45 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 18 | 6 | 3arm | 1 | 0 | 0.23 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------ACGGCGG-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------AACGGCGGCAATTTGTTTACAG------------------ | 22 | 1 | |
| celegans | CGAAGGAACTGAATCAAGGTAAGCAAATTCCCGTCATTTTCTGGAAATATTTTGAAACGGCGGCAATTTGTTTACAGAAAGTGAGCGGTTCGTTT | ||
| cremanei | ----------------TATCGCACGAGCTGCCGGAATCTC-----ATCATGTGATCACGGCGGAAATCTG--TGGTATAAGTG------------ | ||
| ppacificus | ----------------AGCTATG---ATTGTCGCCTTCTTCAATATTCATATTCAGACGGCGGTCA------CATCGATAGTT------------ | ||
| * ** * * ** * ******* * *** | |||
| ++++>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> | Y59E1B.1 Y59E1B.1 Y59E1B.1 | ||
| celegans | .(((.((((((..(((..(((((((((((.(((((..((((..((....))..)))).))))).)))))))))))......))).)))))).))) | 1.000 -30.20 | |
| cremanei | (((((((.((.((((((..(((.( (...)).)))..))))))...)))) )))))...... | 1.000 -22.40 | |
| ppacificus | ((((((( (((((((((.(((..((((....)))).))).))))).)) .))).)))))) | 1.000 -15.40 |
| celegans | chromosome:X:1879617:1879711:1 | Same_strand|Intronic_coding|Y59E1B.1|Y59E1B.1 ## Y59E1B.1|protein_coding|Y59E1B.1|Y59E1B.1 [Source:RefSeq_peptide;Acc:NP_508345] ## {SimpF: Y59E1B.B 1 Expression_profile,WRM066aD05 1 fosmid,WRM0616aC07 1 fosmid,WRM0632cB03 1 fosmid,WRM0624cF08 1 fosmid} |
| cremanei | chromosome:chrUn:32708129:32708188:-1 | Opposite_strand|Intronic_coding|NM_001043076 ## Same_strand|Intronic_coding|NM_021280 |
| ppacificus | chromosome:chrUn:88859116:88859250:-1 | Opposite_strand|Intronic_coding|NM_118882 ## Same_strand|Intronic_coding|NM_002870 |
novel_rep_multiarm_DicerOK_randfoldOK (1 loci)
sblock43_cand
| absolute | CE1 |
| sblock43_cand 5arm | 1 |
| sblock43_cand 3arm | 1 |
| normalized | CE1 |
| sblock43_cand 5arm | 0.001 |
| sblock43_cand 3arm | 0.001 |
sblock43 [novel_rep_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | DNA | 0.38/0.48 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 25 27 | 1 3 | 5arm 3arm | 1 1 | nd nd | 0.13 0.14 | 2 2 | 2 | 1 | 2 | 1 |
| Located in cluster 4: sblock43_cand, block5234_cand |
| reads | miRBase family seed | ||
| seed | --------------------------AGUGUAC------------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------UGCAGAU---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------ATGCAGATT----TTGGTACACTTC----------------------------- | 21 | 1 | |
| -------------------------AAGTGTACCCGGATCTGATATCC---------------------------------------------------------------------- | 23 | 1 | |
| celegans | CTCTACTGAGGAACCCGCCAGTGGTAAGTGTACCCGGATCTGATATCCTATCACCAAAAAGAGGATGCAGATT----TTGGTACACTTCACCACTGGCTGGGTCCCTGAATAGGAG-- | ||
| cbriggsae | -------------------AAGTGTACGTATATCGTGGACT---------TCTATCAAATAAAGTTCTAGAGT--------------------------ACGATACACAA-------- | ||
| cbrenneri | ---------CAGCTGCCTTGGCTGTAAGTT--------------------TCCCCTCAGAGAAATTGCAGATT----TTA-------------------GGGTAACTG---------- | ||
| ppacificus | ATGAATTGAGAA-------AGATGTGA-----TCCCGATCTGATAACGACTCTTCAAGAGAAGAATGCAGATTATCATTA--------------TATCGATGTAACTTCATATTTCCC | ||
| ** ** * * *** * * * | |||
| celegans | ((((....(((.((((((((((((((((((((((..((((((.((((((............)))))))))))) ..))))))))).))))))))).)))).))).....)))) | 0.990 -59.70 | |
| cbriggsae | ..((((((((((.((..((((( (..........))))))..)))) ))).))))).. | 1.000 -15.00 | |
| cbrenneri | (((.(((((((.((((.(((( ((........))))))))))... .)) ))))).))) | 0.999 -16.20 | |
| ppacificus | ((((((((.... .((((((( (...((((((........(((((....)))))...))))))...)))) ))))....))).)))))....... | 0.961 -18.40 |
| celegans | chromosome:IV:1026555:1026666:1 | intergenic |
| cbriggsae | chromosome:chrX:4297401:4297552:-1 | Opposite_strand|Intronic_coding|NM_001079304 ## Same_strand|Intronic_coding|NM_001109816 ## {Repeats: Mariner7_CB -37 182 1 class=DNA} |
| cbrenneri | chromosome:chrUn:111436377:111436528:1 | Same_strand|Intronic_coding|NM_001028068 |
| ppacificus | chromosome:chrUn:44401830:44401921:1 | intergenic |
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