confident miRBase miRNAs
miRNAknown_cloningOK_randfoldOK (7 loci)
miRNAknown_cloningOK_shortStem_mirtron_randfoldOK (1 loci)
cbr-mir-62
| absolute | AF16 |
| cbr-mir-62 3arm | 14 |
| normalized | AF16 |
| cbr-mir-62 3arm | 0.036 |
block4585 (miRBase cbr-mir-62) [miRNAknown_cloningOK_shortStem_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-62 | 0.003 | no | no | 0.26/0.32 | 19/22/0.93 | 0.0 | 0.0 | 10 | 0 | 1 | 0 | 4 | 6 | 3arm | 1 | 1 | 0.14 | 2 | 14 | 1 | na | na |
| Member of family miR-50/62/90 (seed GAUAUGU): cel-mir-90, cbr-mir-50, cbr-mir-90, cbr-mir-62 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------GAUAUGU------------------ | 14 | miR-50/62/90 |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-62 | ------------------------------------------------TGATATGTAATCTAGCTTACAG---- | 22 | 10 |
| ------------------------------------------------TGATATGTAATCTAGCTTAC------ | 20 | 3 | |
| ------------------------------------------------TGATATGTAATCTAGCTTA------- | 19 | 1 | |
| cbriggsae | GGCTATTATAAGGTGGGTTAGATCCCATATCCTTCCGCTTGATGGAAATGATATGTAATCTAGCTTACAGGTCT | ||
| cremanei | ----------AGGTGGGTTAGATCCCATATCCTTCCGCGTAATGGAAATGATATGTAATCTAGCTTACAG---- | ||
| **************************** * ***************************** | |||
| ------------------------------------------------------------------------------------ | NM_001004313 | ||
| ------------------------------------------------------------------------------------ | NM_008873 | ||
| ------------------------------------------------------------------------------------ | NM_001088391 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | NM_171786 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> | NM_077717 | ||
| cbriggsae | ((((........(((((((((((..((((((.(((((.....)))))..))))))..))))))))))).)))). | 0.990 -25.20 | |
| cremanei | ..(((((((((((..((((((.(((((.....)))))..))))))..))))))))))).. | 1.000 -24.60 |
| cbriggsae | chromosome:chrX:14261125:14261198:-1 | Opposite_strand|Intronic_non-coding|NM_001004313|TMEM220 ## Same_strand|Boundary_coding|NM_171786|ugt-50 ## {Repeats: no} ## {MIR: cbr-mir-62} |
| cremanei | chromosome:chrUn:111447762:111447875:-1 | Same_strand|Boundary_coding|NM_171786 |
miRNAknown_multiarm_DicerOK_randfoldOK (1 loci)
cbr-mir-254
| absolute | AF16 |
| cbr-mir-254 5arm | 1 |
| normalized | AF16 |
| cbr-mir-254 5arm | 0.003 |
sblock78 (miRBase cbr-mir-254) [miRNAknown_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-254 | 0.001 | no | no | 0.30/0.38 | 21/23/1.00 | 0.0 nd | 0.0 nd | 1 0 | 0 0 | 1 0 | 0 0 | 24 23 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.24 0.26 | 2 3 | 1 | 1 | 1 | 2 |
| reads | miRBase family seed | ||
| seed | ----------------------------------ACAGAAG--------------------------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------------GCAAAUC--------------------------------------------- | 0 | miR-254 |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------TACAGAAGCATCGATTTTCAC-------------------------------------------------------------------------- | 21 | 1 | |
| cbr-miR-254 | ---------------------------------------------------------------------------TGCAAATCTTTTGCAACTGTATA------------------------------ | 23 | - |
| cbriggsae | ---------CTCCACTCTATGCGGGTTGCCGTATACAGAAGCATCGATTTTCACACGCCA----TGATGCGCCTGTGCAAATCTTTTGCAACTGTATACGGCGATTTAGCAGACCATATTG------- | ||
| cremanei | -GCATGATGAGCACTAGAATGCATATCGCCGCTTACAGAAGCGTGGATTTTCACATACCAA-TCGGAAGTGTCTGTGCAAATCTATCGCAACTGTACACGGCGATACTGCAGTTATTGAACACCTTGC | ||
| celegans | --------------------------------CTACAGAAGCATAGATTTCCACAAACCA--TTCGAGGTGTTTGTGCAAATCTTTCGCGACTGTAG------------------------------- | ||
| cbrenneri | CGCATGATTCACTTAAAAATGCATATTGCCGCCTACAGAAGCATAGATTTTCACATACCGA-TCTGAAGAGTTTGTGCAAATCTGTCGCATCTGTAGGCGGCGATTATGCA----------------- | ||
| cjaponica | -------------------------TCTCCGCCTACAGAAGCATAGATTTCCACAAGTTAATTTTTAAGAGCCTGTGCAAATCTGTCGCATCTGTAAGCGGCGG------------------------ | ||
| ********* * ***** **** * * * *********** * ** ***** | |||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001105250 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_004796 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_138970 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001087279 | ||
| ----- --------------------------------------------------- --------------------------------------------------------- ----- | NM_072374 | ||
| ----- --------------------------------------------------- --------------------------------------------------------- ----- | NM_007496 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001080396 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001092981 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_077496 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001109695 | ||
| cbriggsae | ..........(((((((((((((((((((..(((..(((((.((((.(((. ....).)).)))).)))))...)))..)))))))))))))))).))).......... | 1.000 -41.50 | |
| cremanei | (((...((..((.((...((((((((((((..(((((..((((((((((.((((.((... ........)).)))).))))))).)))..)))))..)))))))).))))..)).))..))...))) | 0.971 -43.30 | |
| celegans | ((((((..((..((((((.((((((((. .....)))..))))).))))))...))..)))))) | 1.000 -22.50 | |
| cbrenneri | ...................((((((((((((((((((((.((((((((((.((((.((... ((....)))).)))).)))))))).)).))))))))))))))).))))) | 0.955 -49.00 | |
| cjaponica | ((.((((.((((((.((((((((((.((((.(((..........))).)))).)))))))).)).)))))).)))).)) | 1.000 -30.90 |
| cbriggsae | chromosome:chrX:5320054:5320161:1 | Same_strand|Intronic_non-coding|NM_001105250|NRXN3 ## Opposite_strand|Intronic_coding|NM_072374|C33G8.2 ## Opposite_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_001080396|FAM155A ## {Repeats: no} ## {MIR: cbr-mir-254} |
| cremanei | chromosome:chrUn:33393203:33393328:-1 | Same_strand|Intronic_coding|NM_001109695 |
| celegans | chromosome:chrX:11333435:11333582:-1 | Same_strand|Intronic_coding|ZK455.2 ## {MIR: cel-mir-254} |
| cbrenneri | chromosome:chrUn:96364:96473:-1 | Same_strand|Intronic_coding|NM_001109695 |
| cjaponica | chromosome:chrUn:593201:593279:-1 | Same_strand|Intronic_coding|NM_001109695 |
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