other miRBase miRNAs
miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK_bulgeHIGH (1 loci)
miRNAknown_cloningHIGH_multiarm_randfoldOK (1 loci)
cbr-mir-82
| absolute | AF16 |
| cbr-mir-82 5arm | 2 |
| cbr-mir-82 3arm | 341 |
| normalized | AF16 |
| cbr-mir-82 5arm | 0.005 |
| cbr-mir-82 3arm | 0.889 |
sblock77 (miRBase cbr-mir-82) [miRNAknown_cloningHIGH_multiarm_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-82 | 0.001 | no | no | 0.37/0.48 | 19/23/0.93 | 0.0 0.0 | 0.0 0.0 | 2 305 | 0 0 | 1 1 | 0 0 | 39 15 | -15 9 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.53 0.09 | 6 1 | 343 | 1 | na | na |
| Member of family miR-80/81/82 (seed GAGAUCA): cel-mir-82, cbr-mir-81, cbr-mir-80, cbr-mir-82 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------GAGAUCA--------------------------------------------- | 341 | miR-80/81/82 |
| seed | --------------------------------------------------------UUCCAUG---------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-82 | --------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT------------------------------- | 22 | 305 |
| --------------------------------------------------------------------------TGAGATCATCGTGAAAGCC---------------------------------- | 19 | 22 | |
| --------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG-------------------------------- | 21 | 13 | |
| -------------------------------------------------------GTTCCATGAAGAAAACATC----------------------------------------------------- | 19 | 2 | |
| --------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTT------------------------------ | 23 | 1 | |
| cbriggsae | ----------------AAGTTCTTCTAGCGACAGGTTTTCGCCGTGATCTGCAGAGTTCCATGAAGAAAACATCTGAGATCATCGTGAAAGCCAGTTGCTTAAGAGGACTC---------------- | ||
| cremanei | -----------------AGTTCTTCTAGCGACAGGTTTTCCCTGTGATCTGCAGAGTACAAAGA--AATACATCTGAGATCATCGTGAAAGCCAGTTGTTTCCAAGAACT----------------- | ||
| celegans | --TGAACTCATGAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAATGACA-GC--TAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTCTTATCAAGAAAATTCA | ||
| cbrenneri | ----GTGAAATAAAATATGTTCTCCTAGCAACAGGTTCTCACTGTGATCTGCAGAGTATAA-AG--CCTACATCTGAGATCATCGTGAAAGCCAGTTGCTT--ACGAACTAAATTCAT--------- | ||
| ppacificus | ------------------TCACTCCCGGCATGCGGTTTTCACGTTGATCTG-AGAGCTAATCGA--TATGTTTCTGAGATCATAGTGAAAGCTACTTGCCGAAGTGA-------------------- | ||
| cjaponica | AATATATGGAATATATGTATTCTTCTAGCGACCGGTTTTCTCCGTGATCTGCAGAGCTTT--TG--CATACTTCTGAGATCATCGTGAAAGCCAGTTGCTTAAAAGAATAGTTTATCTAGGGGTT-- | ||
| ** ** **** ** * ****** *** *********** ******** * *** * | |||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001087279 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_178655 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001034168 | ||
| ----- ----------------------------------------------------------------------------------------------- ----- | NM_001109816 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_065440 | ||
| ----- ----------------------------------------------------------------------------------------------- ----- | NM_020367 | ||
| cbriggsae | .(((((((..((((((.(((((((((.(((((((.((((.(((......)))....))))))))))).))))))))).))))))...))))))). | 1.000 -43.20 | |
| cremanei | (((((((..((((((.(((((((...(((((((.(((((((...... ..))).)))))))))))...))))))).))))))...))))))) | 1.000 -34.90 | |
| celegans | .(((.((.(((...((((((....((((((.(((((((...(((((((.(((.((((.. .. ...))))))))))))))...))))))).)))))).....)))).))..))).))...))). | 0.989 -37.40 | |
| cbrenneri | ..............((((....((((((.((((.((((.(((((((.(((((((... .. ..))).))))))))))).)))).)))).)))))). ..))))......... | 0.968 -36.80 | |
| ppacificus | (((((..(((((...(((((((((..((((((. (((((....... ...))).)).))))))..)))))))))...))))).))))) | 1.000 -36.00 | |
| cjaponica | ......(((.(((.((.(((((((..((((((.(((((((...(((((((.((((((... .) ).....)))))))))))...))))))).))))))...))))))))).))))))...... | 0.916 -37.70 |
| cbriggsae | chromosome:chrX:4423742:4423836:1 | Same_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Opposite_strand|Intronic_coding|NM_001109816|MHC ## Opposite_strand|Intronic_non-coding|NM_020367|PARP11 ## {Repeats: no} ## {MIR: cbr-mir-82} |
| cremanei | chromosome:chrUn:34149150:34149240:1 | intergenic |
| celegans | chromosome:chrX:2435237:2435358:-1 | Same_strand|Intronic_coding|T07D1.2.1 ## {MIR: cel-mir-82} |
| cbrenneri | chromosome:chrUn:976025:976133:1 | intergenic |
| ppacificus | chromosome:chrUn:128697181:128697266:-1 | Same_strand|Intronic_coding|NM_022416 ## Opposite_strand|Intronic_coding|NM_001028815 ## {Repeats: GA-rich 1 89 -1 class=Low_complexity} |
| cjaponica | chromosome:chrUn:6900586:6900706:-1 | intergenic |
miRNAknown_cloningOK_shortStem (1 loci)
cbr-mir-84
block4324 (miRBase cbr-mir-84) [miRNAknown_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-84 | 0.021 | no | no | 0.45/0.48 | 22/23/1.00 | 0.0 | 0.0 | 5 | 0 | 1 | 0 | 38 | -44 | loop | 1 | nd | 0.22 | 1 | 5 | 1 | na | na |
| Member of family miR-241/48/let-7/84 (seed GAGGUAG): cbr-let-7, cbr-mir-48, cbr-mir-241, cbr-mir-84 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------GAGGUAG----------------------------------------------------------------------------------------------------- | 5 | miR-241/48/let-7/84 |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------TGAGGTAGTTTGC-A----------ATGCTGTCG--------------------------------------------------------------------------- | 23 | 5 | |
| cbr-miR-84 | -------------------------------------------TGAGGTAGTTTGC-A----------ATGCTGTC---------------------------------------------------------------------------- | 22 | - |
| cbriggsae | -----TTGCTATATATTCAGCCGTACTGTCTGAAAATAACATCTGAGGTAGTTTGC-A----------ATGCTGTCGACGTAACTGAAAAGTCAACATCATTCCAACTTC--CTCGGCTGTTCAAAAGGCTA-------------------- | ||
| cremanei | -------------------ACGAAACAGTCTAACAGAAGCATCTGAGGTAGTTTGT-A----------ATGCTGTCGACGC-ACTGTAATGTCTACATCATTTCAACTGC--CTCGGCTGTTTTTAGACTTTTGTTTTGTCTCCAGATCTTG | ||
| celegans | -------------------------------------------TGAGGTAGTATGT-A----------ATATTGTAGACTG-TCTATAATGTCCACAATGTTTCAACTAA--CTCG------------------------------------ | ||
| cbrenneri | -------------------------------------------TGAGGTAGTTTGGAA----------ATGCTGTCGACGC-ATTGTGATGTCAACAACATTTCAACTAA--CTCG------------------------------------ | ||
| ppacificus | GCTGGTTAGCGTATTGATTGTCTGGGAGAGAGAGAGGAAGGGAAGAGGTAGGCGGGAGGAGAGCAGGTAGATCGCTAGCCTCCTCCCGGCCTCTTCCTCCCTCCGCCCTCCACTCAGTTTGTCAAAGGTCAACTACGT-------------- | ||
| ******* * * * * ** * * * * *** | |||
| ----- --------------------------------------------------- - ------------------------------------------ -------------------- ----- | NM_001095669 | ||
| ----- --------------------------------------------------- - ------------------------------------------ -------------------- ----- | NM_001047906 | ||
| ----- --------------------------------------------------- - ------------------------------------------ -------------------- ----- | NM_001047906 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ + ++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++ +++++ | NM_001122840 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ + ++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++ +++++ | NM_033150 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ + ++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++ +++++ | NM_001090075 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ + ++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++ +++++ | NM_214509 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ + ++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++ +++++ | NM_007734 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ + ++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++ +++++ | NM_000090 | ||
| cbriggsae | ..(((.....(((((.(.....).)))))...((((.((((((.((((.(. ( (((.(((.(((...........))).))).))))).)))).) ))))).)))).....))).. | 1.000 -29.00 | |
| cremanei | (((((((((((((...((((((.(((((((((.(((. ( (((.(((.((((. .......)))).))).)))).))))))) ))))).))))))))))))...)))))))............ | 0.973 -40.90 | |
| celegans | .(((.((((.((. ( (((((((.(((.. ........))).)))))))).)))))). ))). | 1.000 -17.40 | |
| cbrenneri | .(((.((((...((( (((.(((.((((( (...)).)))).))).)))))).)))). ))). | 1.000 -18.50 | |
| ppacificus | (((((((.((...(((((...(((((...(((...((.(((((.((((.((((((((((((.((.(((.....))).))))))))))).))))))).)))))))...)))..)))))...)))))..)).))))).)) | 0.956 -61.90 |
| cbriggsae | chromosome:chrX:762822:762935:-1 | Opposite_strand|Intronic_coding|NM_001095669|foxp2a ## Same_strand|Intronic_coding|NM_001122840|si:ch211-212m21.5 ## {Repeats: no} ## {MIR: cbr-mir-84} |
| cremanei | chromosome:chrUn:128707146:128707264:1 | Same_strand|Intronic_coding|NM_212504 |
| celegans | chromosome:chrX:16022294:16022447:-1 | intergenic ## {MIR: cel-mir-84} |
| cbrenneri | chromosome:chrUn:19113949:19114102:1 | Same_strand|Intronic_coding|NM_001030940 ## Opposite_strand|Intronic_coding|NM_007735 |
| ppacificus | chromosome:chrUn:132845957:132846094:-1 | Same_strand|Intronic_coding|NM_203379 |
cbr-mir-789a
| absolute | AF16 |
| cbr-mir-789a 3arm | 1 |
| normalized | AF16 |
| cbr-mir-789a 3arm | 0.003 |
block4112 (miRBase cbr-mir-789a) [miRNAknown_rep]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-789a | 0.051 | no | tRNA | 0.48/0.60 | 20/23/1.00 | 0.0 | 0.5 | 2 | 0 | 1 | 0 | 6 | 10 | 3arm | 2 | nd | 0.25 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------CGAUCCC------------------------- | 2 | novel |
| seed | ------------------------------------------------------------------CCCUGCC--------------------- | 0 | miR-789a/789b |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------------------------TCGATCCCTGCCTGGGTCAA------------- | 20 | 1 | |
| -------------------------------------------------------------TCGATCCCTGCCTGGGTCAAA------------ | 21 | 1 | |
| cbr-miR-789a | -----------------------------------------------------------------TCCCTGCCTGGGTCAAATGTTTT------ | 23 | - |
| cbriggsae | gaaacgtggccttgtggcctaatggataaggcgtctgacttctaatcagaagattgcaggtTCGATCCCTGCCTGGGTCAAATGTTTTtgtttt | ||
| ********************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------- | NM_001011629 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_205579 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031572 | ||
| -------------------------------------------------------------------------------------------------------- | NM_011821 | ||
| -------------------------------------------------------------------------------------------------------- | NM_102563 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001016453 | ||
| -------------------------------------------------------------------------------------------------------- | NM_134696 | ||
| -------------------------------------------------------------------------------------------------------- | NM_072974 | ||
| -------------------------------------------------------------------------------------------------------- | NM_001079844 | ||
| -------------------------------------------------------------------------------------------------------- | NM_182305 | ||
| -------------------------------------------------------------------------------------------------------- | NM_072990 | ||
| cbriggsae | ((((((.(((....(((((((..((...(((.(((.(((((.(((((....))))).))))).))).))).)))))))))...)))..)))))) | 1.000 -28.30 |
| cbriggsae | chromosome:chrV:10778669:10778762:1 | Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_205579|myo3a ## Same_strand|Intronic_non-coding|NM_031572|Cyp2c12 ## Opposite_strand|Intronic_coding|NM_102563|AT1G27980 ## {Repeats: tRNAArgACG_CB 1 84 1 class=tRNA} ## {MIR: cbr-mir-789a} |
| Back to summary page | other miRBase miRNAs: | Page 1 | Page 2 |
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