other miRBase miRNAs
miRNAknown_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)
cbr-mir-232
| absolute | AF16 |
| cbr-mir-232 3arm | 15 |
| normalized | AF16 |
| cbr-mir-232 3arm | 0.039 |
block2588 (miRBase cbr-mir-232-2) [miRNAknown_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-232-2 | 0.001 | no | no | 0.39/0.41 | 22/23/1.00 | 0.0 | 0.0 | 14 | 0 | 1 | 0 | 17 | 5 | 3arm | 2 | nd | 0.32 | 4 | 15 | 1 | na | na |
| Member of family miR-232 (seed AAAUGCA): cbr-mir-232, cbr-mir-232 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------AAAUGCA------------------------------------------------- | 14 | miR-232 |
| seed | ---------------------------------------------------------------------------------UAAAUGC-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------------------TAAATGCAT-CTTAACTGCGGTG---------------------------------- | 22 | 14 | |
| --------------------------------------------------------------------------------ATAAATGCAT-CTTAACTGCGGTG---------------------------------- | 23 | 1 | |
| cbr-miR-232 | ---------------------------------------------------------------------------------TAAATGCAT-CTTAACTGCGGTGA--------------------------------- | 23 | - |
| cbriggsae | -------------TTCAAGATTT---------CGGATCTCCGTAGTTTTGACCATTTTATCCAAC----CTAATAATGTGATAAATGCAT-CTTAACTGCGGTGATCTG-GATTTTGTGAAC---------------- | ||
| cremanei | GAGGTAAGTTGAAGTCTGATTGT---------CGGATCTCCGTAGTTTCGATCATTTTATCCTATCT--CCAACAAAGCGATAAATGCAT-CTTAACTGCGGTGATCTG-AATTCTTGGACACTTTTTTCTTTATTTC | ||
| celegans | TTTGAAAAATAAGTTC-AATTTT---------TGGATCCCTGCAGTTTCGATGATTTTATCCTTAATT-CTGAAGATGTGATAAATGCAT-CTTAACTGCGGTGATCTA-GATCATGAACACTTTTTTAAA------- | ||
| cbrenneri | -------------------------------------CCCCGTAGTTTCGATCATTTTATCCTGCCCAACTCAAAAAGTGATAAATGCAT-CTTAACTGCGGTG---------------------------------- | ||
| cjaponica | ------GGTAAGTTTCTGGGTCCTCACGAGCGTGGATCTCCGTAGTTTCGATCGTTTTATCCAGCGCCACAAACCGTGCGATAAATGCAT-CTTAACTGCGGTGATCTGCAATTCTGGGACACGCTTTTTTC------ | ||
| ppacificus | --------------------------------------CCTGCAATT--GAGCATGCAATTTAAC--------AAATAACATAAATGCATGCTTCCATTCGGA----------------------------------- | ||
| * * * ** ** * ** ********** *** * *** | |||
| +++++ ++++++++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++ ++++++++++++ +++++ | NM_001106790 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_001128722 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_069625 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_069625 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_001273 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_001083844 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_069822 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_069822 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_171311 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_011416 | ||
| +++++ ++++++++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++ ++++++++++++ +++++ | NM_025685 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_122970 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_005402 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_001033832 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_214509 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_001090075 | ||
| +++++ ++++++++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++ ++++++++++++ +++++ | NM_001011629 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_135592 | ||
| +++++ ++++++++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++ ++++++++++++ +++++ | NM_001087352 | ||
| +++++ ++++++++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++ ++++++++++++ +++++ | NM_078712 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_001011005 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_003070 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_003269 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_139045 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_171312 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_000692 | ||
| +++++ ++++++++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++ ++++++++++++ +++++ | NM_001081235 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_171903 | ||
| +++++ ++++++++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++ ++++++++++++ +++++ | NM_001087789 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_001034039 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_007742 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_072974 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_067302 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_000493 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_001127025 | ||
| cbriggsae | (((((((.(( ((((((.((((((((..((....((((((((.. .......)).))))))....) )..)))))))).)))))) )).))).)))). | 1.000 -31.30 | |
| cremanei | ((((((((..(((((((((...( ((((((.((((((((..(((((.((((((((.... .......)).)))))))).)) )..)))))))).)))))) )....))))))....)))..)))))))) | 1.000 -37.80 | |
| celegans | .((((((((...(((( (...(( ((((((.((((((((..((((..((((((......( (....))...))))))..))) )..)))))))).)))))) ))...)))))..)))))))). | 0.989 -37.90 | |
| cbrenneri | ..((((((((..(((((.((((((((.............)).)))))))).)) )..)))))))).. | 1.000 -18.42 | |
| cjaponica | .............((((.((.((..(((((((.((((((((..(((((.((((((..((((........)))))))))))).)) )..)))))))).)))))))..)).))))))........... | 0.951 -40.90 | |
| ppacificus | .(((.(((. ((((((((.(((((.. ........)))))))))))))..)))))). | 0.967 -13.60 |
| cbriggsae | chromosome:chrIV:5589891:5589984:1 | Same_strand|Intronic_coding|NM_001106790|Kif21a ## Opposite_strand|Intronic_non-coding|NM_001128722|LOC565233 ## Opposite_strand|Intronic_coding|NM_069625|ZK596.1 ## Same_strand|Intronic_non-coding|NM_025685|Col27a1 ## {Repeats: no} ## {MIR: cbr-mir-232-2} |
| cremanei | chromosome:chrUn:56798774:56798898:-1 | Opposite_strand|Intronic_coding|NM_069625 |
| celegans | chromosome:chrIV:10994129:10994246:-1 | intergenic ## {MIR: cel-mir-232} |
| cbrenneri | chromosome:chrUn:102760940:102761073:1 | intergenic |
| cjaponica | chromosome:chrUn:41745063:41745187:-1 | Opposite_strand|Intronic_coding|NM_172827 |
| ppacificus | chromosome:chrUn:170249641:170249774:1 | Same_strand|Intronic_coding|NM_000209 ## Opposite_strand|Intronic_coding|NM_016248 |
block2597 (miRBase cbr-mir-232-1) [miRNAknown_cloningOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-232-1 | 0.001 | no | no | 0.39/0.41 | 22/23/1.00 | 0.0 | 0.0 | 14 | 0 | 1 | 0 | 17 | 5 | 3arm | 2 | nd | 0.32 | 4 | 15 | 1 | na | na |
| Member of family miR-232 (seed AAAUGCA): cbr-mir-232, cbr-mir-232 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------AAAUGCA------------------------------------------------- | 14 | miR-232 |
| seed | ---------------------------------------------------------------------------------UAAAUGC-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------------------TAAATGCAT-CTTAACTGCGGTG---------------------------------- | 22 | 14 | |
| --------------------------------------------------------------------------------ATAAATGCAT-CTTAACTGCGGTG---------------------------------- | 23 | 1 | |
| cbr-miR-232 | ---------------------------------------------------------------------------------TAAATGCAT-CTTAACTGCGGTGA--------------------------------- | 23 | - |
| cbriggsae | -------------TTCAAGATTT---------CGGATCTCCGTAGTTTTGACCATTTTATCCAAC----CTAATAATGTGATAAATGCAT-CTTAACTGCGGTGATCTG-GATTTTGTGAAC---------------- | ||
| cremanei | GAGGTAAGTTGAAGTCTGATTGT---------CGGATCTCCGTAGTTTCGATCATTTTATCCTATCT--CCAACAAAGCGATAAATGCAT-CTTAACTGCGGTGATCTG-AATTCTTGGACACTTTTTTCTTTATTTC | ||
| celegans | TTTGAAAAATAAGTTC-AATTTT---------TGGATCCCTGCAGTTTCGATGATTTTATCCTTAATT-CTGAAGATGTGATAAATGCAT-CTTAACTGCGGTGATCTA-GATCATGAACACTTTTTTAAA------- | ||
| cbrenneri | -------------------------------------CCCCGTAGTTTCGATCATTTTATCCTGCCCAACTCAAAAAGTGATAAATGCAT-CTTAACTGCGGTG---------------------------------- | ||
| cjaponica | ------GGTAAGTTTCTGGGTCCTCACGAGCGTGGATCTCCGTAGTTTCGATCGTTTTATCCAGCGCCACAAACCGTGCGATAAATGCAT-CTTAACTGCGGTGATCTGCAATTCTGGGACACGCTTTTTTC------ | ||
| ppacificus | --------------------------------------CCTGCAATT--GAGCATGCAATTTAAC--------AAATAACATAAATGCATGCTTCCATTCGGA----------------------------------- | ||
| * * * ** ** * ** ********** *** * *** | |||
| +++++ ++++++++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++ ++++++++++++ +++++ | NM_001106790 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_001128722 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_069625 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_069625 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_069822 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_069822 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_171311 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_171311 | ||
| +++++ ++++++++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++ ++++++++++++ +++++ | NM_025685 | ||
| +++++ ++++++++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++ ++++++++++++++++++ ++++++++++++ +++++ | NM_001011629 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_135592 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_205170 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_204577 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_171312 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_171312 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_171903 | ||
| ----- ---------- --------------------------------- --------------------- ------------------ ------------ ----- | NM_171903 | ||
| cbriggsae | (((((((.(( ((((((.((((((((..((....((((((((.. .......)).))))))....) )..)))))))).)))))) )).))).)))). | 1.000 -31.30 | |
| cremanei | ((((((((..(((((((((...( ((((((.((((((((..(((((.((((((((.... .......)).)))))))).)) )..)))))))).)))))) )....))))))....)))..)))))))) | 1.000 -37.80 | |
| celegans | .((((((((...(((( (...(( ((((((.((((((((..((((..((((((......( (....))...))))))..))) )..)))))))).)))))) ))...)))))..)))))))). | 0.989 -37.90 | |
| cbrenneri | ..((((((((..(((((.((((((((.............)).)))))))).)) )..)))))))).. | 1.000 -18.42 | |
| cjaponica | .............((((.((.((..(((((((.((((((((..(((((.((((((..((((........)))))))))))).)) )..)))))))).)))))))..)).))))))........... | 0.951 -40.90 | |
| ppacificus | .(((.(((. ((((((((.(((((.. ........)))))))))))))..)))))). | 0.967 -13.60 |
| cbriggsae | chromosome:chrIV:5768761:5768854:1 | Same_strand|Intronic_coding|NM_001106790|Kif21a ## Opposite_strand|Intronic_non-coding|NM_001128722|LOC565233 ## Opposite_strand|Intronic_coding|NM_069625|ZK596.1 ## Same_strand|Intronic_non-coding|NM_025685|Col27a1 ## {Repeats: no} ## {MIR: cbr-mir-232-1} |
| cremanei | chromosome:chrUn:56798774:56798898:-1 | Opposite_strand|Intronic_coding|NM_069625 |
| celegans | chromosome:chrIV:10994129:10994246:-1 | intergenic ## {MIR: cel-mir-232} |
| cbrenneri | chromosome:chrUn:102760940:102761073:1 | intergenic |
| cjaponica | chromosome:chrUn:41745063:41745187:-1 | Opposite_strand|Intronic_coding|NM_172827 |
| ppacificus | chromosome:chrUn:170249641:170249774:1 | Same_strand|Intronic_coding|NM_000209 ## Opposite_strand|Intronic_coding|NM_016248 |
miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK (2 loci)
cbr-mir-71
| absolute | AF16 |
| cbr-mir-71 5arm | 858 |
| cbr-mir-71 3arm | 99 |
| normalized | AF16 |
| cbr-mir-71 5arm | 2.237 |
| cbr-mir-71 3arm | 0.258 |
sblock3 (miRBase cbr-mir-71) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-71 | 0.001 | no | no | 0.30/0.53 | 18/24/0.43 | 0.0 0.0 | 0.0 0.0 | 529 94 | 0 0 | 1 1 | 0 0 | 9 8 | 9 6 | 5arm 3arm | 1 1 | nd nd | 0.06 0.09 | 1 1 | 957 | 1 | -3 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------GAAAGAC----------------------------------------------------------------------------------------------- | 853 | miR-71 |
| seed | -------------------------------------------------------------------------------------------AUCACUA---------------------------------------------- | 97 | novel |
| seed | -----------------------------------------UGAAAGA------------------------------------------------------------------------------------------------ | 2 | novel |
| seed | -----------------------------------------------------------------------------------------------CUAUUCU------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------------------------------------------------UCACUAU--------------------------------------------- | 1 | novel |
| seed | -------------------------------------------AAAGACA---------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ---------------------------------------------AGACAUG-------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------GACAUGG------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------TGAAAGACATGGGTAGT------------G------------------------------------------------------------------------- | 18 | 529 | |
| -----------------------------------------TGAAAGACATGGGTAGT------------GAG----------------------------------------------------------------------- | 20 | 155 | |
| -----------------------------------------TGAAAGACATGGGTAGT------------GAGACG-------------------------------------------------------------------- | 23 | 102 | |
| ------------------------------------------------------------------------------------------TATCACTATTCTGTTTTTCGCC-------------------------------- | 22 | 94 | |
| -----------------------------------------TGAAAGACATGGGTAGT------------GAGAC--------------------------------------------------------------------- | 22 | 55 | |
| cbr-miR-71 | -----------------------------------------TGAAAGACATGGGTAGT------------GA------------------------------------------------------------------------ | 19 | 8 |
| ------------------------------------------------------------------------------------------TATCACTATTCTGTTTTTCG---------------------------------- | 20 | 2 | |
| -----------------------------------------TGAAAGACATGGGTAGT------------GAGACGT------------------------------------------------------------------- | 24 | 2 | |
| -----------------------------------------TGAAAGACATGGGTAGT------------GAGA---------------------------------------------------------------------- | 21 | 2 | |
| --------------------------------------------AAGACATGGGTAGT------------GAGACG-------------------------------------------------------------------- | 20 | 1 | |
| ----------------------------------------------------------------------------------------------ACTATTCTGTTTTTCGCC-------------------------------- | 18 | 1 | |
| ----------------------------------------ATGAAAGACATGGGTAGT-------------------------------------------------------------------------------------- | 18 | 1 | |
| ------------------------------------------------------------------------------------------TATCACTATTCTGTTTTTCGC--------------------------------- | 21 | 1 | |
| ------------------------------------------GAAAGACATGGGTAGT------------GAGAC--------------------------------------------------------------------- | 21 | 1 | |
| -------------------------------------------------------------------------------------------ATCACTATTCTGTTTTTCGC--------------------------------- | 20 | 1 | |
| ---------------------------------------------AGACATGGGTAGT------------GAGACG-------------------------------------------------------------------- | 19 | 1 | |
| ----------------------------------------ATGAAAGACATGGGTAGT------------G------------------------------------------------------------------------- | 19 | 1 | |
| cbriggsae | GC--------------------------------TGAACGATGAAAGACATGGGTAGT------------GAGACGTCGGAGCCTCGTCGTATCACTATTCTGTTTTTCGCCGATCAGTC------------------------ | ||
| cremanei | ---------------GTCTGTACCACCAAACACTCGAACGATGAAAGACATGGGTAGT------------GAGACGTCGGAGCCTCGTCGTATCACTATTCTGTTTTTCGCCG---GTCTTGTGATATACCATGTGTCAGAT-- | ||
| celegans | ACAGAG------GTTGTCTGCTC-----------TGAACGATGAAAGACATGGGTAGT------------GAGACGTCGGAGCCTCGTCGTATCACTATTCTGTTTTTCGCCGTCGGGATCGTGACCTGGAAGCTGT------- | ||
| cbrenneri | ------------ACTGTAGACTTTGTCGTCGCCGCTACCGTTGAAAGACATGGGTAGT------------GAGACGTCGGAGCCTCGTCGTATCACTATTCTGTTTTTCGCCG---GTACCCAGGCATCGAAATTAT--GGT-- | ||
| cjaponica | GGATGCCAGCATACAGTCTGC-------------CCGACGATGAAAGACATGGGTAGT------------GAGACGTCGGAGCCTCGTCGTATCACTATTCTGTTTTTCGCCGTCTGGATTGTGACGCAGTTTTGGCCC----- | ||
| ppacificus | GAAGGGAGAATTA---------------------TGGCAGATGAAAGACATGGATGATTTGAATGATTTCGAGCCGATAAACGTTC------TTGTTATTGTGTTTT----------GAGAGTGGCATTGATTGAGATAACTTC | ||
| * ************ * * *** ** * ** * **** ****** | |||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_002035 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_177366 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_001107428 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_214177 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_001011629 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_058481 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_014920 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_058496 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001047248 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001047247 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_016513 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_059707 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_000087 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_010301 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001026219 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001026218 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001026217 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_008139 | ||
| ------- ------------------------ -------------------------------------------------- ----- | NM_001033318 | ||
| +++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001128984 | ||
| cbriggsae | (( (((.((.(((((((((.((((((( ((.(((.(((....))).))).)))))))))))))))))).)).))))). | 1.000 -34.90 | |
| cremanei | ((((((((.......(((..((.((.(((((((((.((((((( ((.(((.(((....))).))).)))))))))))))))))).)) .))..))).........))).))))) | 0.860 -37.79 | |
| celegans | (((((( (((......(( ((.(((.(((((((((.((((((( ((.(((.(((....))).))).)))))))))))))))))).))))))).....))))).....)))) | 0.954 -38.90 | |
| cbrenneri | (((((((......(((..(((..(((((.(((((((((.((((((( ((.(((.(((....))).))).)))))))))))))))))).)) )))....)))..)))..)))) ))) | 0.988 -45.20 | |
| cjaponica | ....(((((.((...(((..( (.((((.(((((((((.((((((( ((.(((.(((....))).))).)))))))))))))))))).)))).)).....)))...)).))))).. | 0.994 -45.80 | |
| ppacificus | ((((....((((( ((.((.....(((((((.((((((..(((((...(((...)))....))))) ..))))))))))))) .....)).))).)))).......)))) | 0.975 -19.50 |
| cbriggsae | chromosome:chrI:2252472:2252547:-1 | Same_strand|Intronic_non-coding|NM_002035|KDSR ## Opposite_strand|Intronic_non-coding|NM_001107428|Zfp612 ## Opposite_strand|Intronic_coding|NM_214177|CNG-1 ## Same_strand|Intronic_coding|NM_001047247|Y73E7A.1 ## {Repeats: no} ## {MIR: cbr-mir-71} |
| cremanei | chromosome:chrUn:83434594:83434705:-1 | Same_strand|Intronic_coding|NM_001026219 |
| celegans | chromosome:chrI:9379913:9380020:-1 | Same_strand|Intronic_coding|F16A11.3a ## {MIR: cel-mir-71} |
| cbrenneri | chromosome:chrUn:140296022:140296134:1 | Same_strand|Intronic_coding|NM_001026219 |
| cjaponica | chromosome:chrUn:134164449:134164562:1 | Same_strand|Intronic_coding|NM_074448 |
| ppacificus | chromosome:chrUn:63063018:63063124:-1 | intergenic |
cbr-mir-58
| absolute | AF16 |
| cbr-mir-58 5arm | 10 |
| cbr-mir-58 3arm | 471 |
| normalized | AF16 |
| cbr-mir-58 5arm | 0.026 |
| cbr-mir-58 3arm | 1.228 |
sblock40 (miRBase cbr-mir-58) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-58 | 0.001 | no | no | 0.43/0.53 | 18/23/0.29 | 0.3 0.0 | 0.0 0.0 | 9 320 | 0 0 | 1 1 | 0 0 | 6 7 | 13 12 | 5arm 3arm | 1 1 | nd nd | 0.26 0.21 | 3 3 | 481 | 1 | 2 | -1 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------GAGAUCG------------------------------------- | 462 | miR-58 |
| seed | ---------------------------CCCUACU---------------------------------------------------------------------------------------- | 6 | novel |
| seed | ----------------------------------------------------------------------------------UCG-UUCA-------------------------------- | 5 | novel |
| seed | --------------------------GCCCUAC----------------------------------------------------------------------------------------- | 4 | novel |
| seed | -------------------------------------------------------------------------------AGAUCG-U----------------------------------- | 2 | novel |
| seed | -----------------------------------------------------------------------------UGAGAUC-------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------TGAGATCG-TTCA-GTACGGC------------------------ | 19 | 320 | |
| cbr-miR-58 | -----------------------------------------------------------------------------TGAGATCG-TTCA-GTACGGCAAT--------------------- | 22 | 119 |
| -----------------------------------------------------------------------------TGAGATCG-TTCA-GTACGG------------------------- | 18 | 17 | |
| --------------------------GCCCTACTATTCGCATCTCATC-------------------------------------------------------------------------- | 22 | 6 | |
| ---------------------------------------------------------------------------------ATCG-TTCA-GTACGGCAAT--------------------- | 18 | 4 | |
| -----------------------------------------------------------------------------TGAGATCG-TTCA-GTACGGCAA---------------------- | 21 | 4 | |
| -------------------------TGCCCTACTATTCGCATCTCATC-------------------------------------------------------------------------- | 23 | 3 | |
| -----------------------------------------------------------------------------TGAGATCG-TTCA-GTACGGCA----------------------- | 20 | 2 | |
| ----------------------------------------------------------------------------ATGAGATCG-TTCA-GTACGGCAAT--------------------- | 23 | 1 | |
| -------------------------TGCCCTACTATTCGCATCTCAT--------------------------------------------------------------------------- | 22 | 1 | |
| ------------------------------------------------------------------------------GAGATCG-TTCA-GTACGGCAAT--------------------- | 21 | 1 | |
| ----------------------------------------------------------------------------ATGAGATCG-TTCA-GTACGG------------------------- | 19 | 1 | |
| ------------------------------------------------------------------------------GAGATCG-TTCA-GTACGGCA----------------------- | 19 | 1 | |
| ---------------------------------------------------------------------------------ATCG-TTCA-GTACGGCAATG-------------------- | 19 | 1 | |
| cbriggsae | -------------------ATCCATTGCCCTACTATTCGCATCTCATCACTCCAGTATATATATATATATATAAGGATGAGATCG-TTCA-GTACGGCAATGGAA----------------- | ||
| cremanei | --CGTTTGATGCTCGCCATATCCATTGCCCTACTATTCGCATCTCATCACTTCC-TCCA-GTA-----ATATAAGGATGAGATCG-TTCA-GTACGGCAATGGAAAGAGCTATATAACG--- | ||
| celegans | ----------GCTCGTCATATCCATTGCCCTACTCTTCGCATCTCATCACTTCG-TCCA-ATA-----CCATAGGGATGAGATCG-TTCA-GTACGGCAATGGACTGAGC------------ | ||
| cbrenneri | CCCGTCTGATGCTCGTCATATCCATTGCCCTACTCTTCGCATCTCATCACTTCG-TCCG-CCA-----ATATAAGGATGAGATCG-TTCA-GTACGGCAATGGAAAGAGCTATAACACGGTG | ||
| cjaponica | ----------GGTTACAATATGA-----------TTTCACGTGAAAATTCTGCA-AACA-CCAGTTATTTTGAGAAATGAGATCG-TTCACGTGTCGCC----------------------- | ||
| ppacificus | ----GTCTGAACTTGGAGGGCGAATTTC---GTTTTTCGA-------------C-TACA-AGAAATATGGAGAGAGACGAGATCGATTCAAGCTTGGAT----------------------- | ||
| *** * * * ******* **** * * | |||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_007735 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001003090 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_000393 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_062161 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_053304 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_031362 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_201478 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_000088 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_000091 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_214509 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001105289 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001011005 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001090075 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_203889 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_064264 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_033150 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_131292 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_031365 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_007737 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_001844 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001123230 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001029258 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_001107003 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_031163 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_009152 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_067877 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001029256 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_000393 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001081764 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001034039 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001087791 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_001069271 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_134696 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_007743 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_033150 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001844 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_199214 | ||
| ----- ------------------------------------------------------------------ ---- -------------- ----- | NM_065566 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001113224 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001122918 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001124177 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001001135 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_012133 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_199446 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001007831 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001014152 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_135345 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_164797 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_000293 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_067903 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001082301 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++ +++++ | NM_001031835 | ||
| cbriggsae | .(((((((((.((((...((.((((((((.((...(((((((....))))))).)))))))))))) ...) ))).))))))))). | 1.000 -36.00 | |
| cremanei | ((((....((((......(((((((((.((((...((.((((((((.(((.. .... ... ....))))))))))))) ...) ))).)))))))))..)))).....)))) | 1.000 -38.72 | |
| celegans | (((((.....(((((((((.((((...((.((((((((.((..( (... ..) )...)).)))))))))) ...) ))).))))))))).))))) | 1.000 -35.60 | |
| cbrenneri | .((((...((((((......(((((((((.((((...((.((((((((.(((.. .... ... ....))))))))))))) ...) ))).)))))))))..)))).))...)))).. | 0.998 -41.32 | |
| cjaponica | (((.(((..(((( (((((....(((((.(((.. .... .)))..)))))......)))))))) ).....))).))) | 0.804 -13.70 | |
| ppacificus | ((((((.((((((...((.((((( (((((((.. ( ((.. .......))).)))))))))))))).)))))).)))))) | 1.000 -24.80 |
| cbriggsae | chromosome:chrIV:7676290:7676373:-1 | Same_strand|Intronic_coding|NM_007735|Col4a4 ## Opposite_strand|Intronic_coding|NM_033150|COL2A1 ## Same_strand|Intronic_non-coding|NM_001029258|clec-266 ## {Repeats: no} ## {MIR: cbr-mir-58} |
| cremanei | chromosome:chrUn:147063280:147063387:1 | Same_strand|Intronic_coding|NM_126152 |
| celegans | chromosome:chrIV:3233250:3233340:1 | Same_strand|Intronic_coding|Y67D8A.1.1 ## {MIR: cel-mir-58} |
| cbrenneri | chromosome:chrUn:166102196:166102308:1 | intergenic |
| cjaponica | chromosome:chrUn:54464155:54464278:1 | intergenic |
| ppacificus | chromosome:chrUn:57094622:57094745:1 | Opposite_strand|Intronic_coding|NM_001081764 |
miRNAknown_multiarm_DicerNOK_randfoldOK (2 loci)
cbr-mir-72
| absolute | AF16 |
| cbr-mir-72 3arm | 2 |
| normalized | AF16 |
| cbr-mir-72 3arm | 0.005 |
sblock54 (miRBase cbr-mir-72) [miRNAknown_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-72 | 0.001 | no | no | 0.53/0.59 | 19/22/0.67 | nd 0.0 | nd 0.0 | 0 2 | 0 0 | 0 1 | 0 0 | 12 13 | 28 17 | 5arm 3arm | 1 1 | nd nd | 0.16 0.23 | 2 2 | 2 | 1 | -1 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------------------------GCUUCGC------------------------------------------ | 2 | novel |
| seed | --------------------------GGC-AGAU--------------------------------------------------------------------------------------------------------------------------- | 0 | miR-72 |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------------------------------------AGCTTCGCCACATCGTGCCATG---------------------------- | 22 | 2 | |
| cbr-miR-72 | -------------------------AGGC-AGATGTTGGCATAGC---------------------------------------------------------------------------------------------------------------- | 19 | - |
| cbriggsae | -------------CTCGCCCGAGCTAGGC-AGATGTTGGCATAGCTGAATGCAAATCAGAAAT------------CGAAATTCGAAAAGTTTGAATTTCGCGCGCTCAGCTTCGCCACATCGTGCCATGCGTAGGCTTGAGA--------------- | ||
| celegans | TTCTGCTGAAGGTCCCGTCAGAGCTAGGCAAGATGTTGGCATAGCTGAATGAT----------------------CGCTATAACAA----------------CTATCAGCTTCGCCACATTCTGCCACGCACTGATGTGAGGACCTGATTTTTTGAA | ||
| cbrenneri | ---------TGGATTCGTTAGAGCTAGGCAAGATGTTGGCATAGCTGAATGAAATTCTCGATTATCTCCTTTTTTCGACAAAAGGGAGAGT-----------CACTCAGCTTCGCCACATATTGCCACGCGCTGATTTGAGTCCA------------ | ||
| cjaponica | -----------------------CTAGGCAAGATGTTGGCATAGCTGAACTAAAACCGC----------------CGGCGTCAGGTA------------------TCAGCTTCGCCACATTCTGCCAAG---------------------------- | ||
| ****** ******************* ** *************** ***** * | |||
| cbriggsae | ((((((...((..((( (((((.((((..((((((.(((........... ((((((((((.....)))))))))).))).))))))..)))))))).))))..))...)))..))). | 0.850 -46.90 | |
| celegans | .........((((((((((((.((..((((..(((.((((..((((((..... ........... ...))))))..)))))))..))))..)).))))))...))))))........... | 0.946 -44.21 | |
| cbrenneri | .(((((((((((.((..(((((.(((.((((..((((((.(((............((((((((((.....)))))))))).) )).))))))..))))))).)))))..)).)))))..)))))). | 0.872 -52.82 | |
| cjaponica | ...((((..(((.((((..(((((((((.....((. ...))...))). ))))))..)))))))..))))... | 1.000 -28.50 |
| cbriggsae | chromosome:chrUn:6734604:6734719:-1 | {Repeats: no} ## {MIR: cbr-mir-72} |
| celegans | chromosome:chrII:2452830:2452948:1 | intergenic ## {MIR: cel-mir-72} |
| cbrenneri | chromosome:chrUn:87557314:87557438:1 | intergenic |
| cjaponica | chromosome:chrUn:88945938:88946093:1 | intergenic |
cbr-mir-360
| absolute | AF16 |
| cbr-mir-360 5arm | 1 |
| normalized | AF16 |
| cbr-mir-360 5arm | 0.003 |
sblock80 (miRBase cbr-mir-360) [miRNAknown_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-360 | 0.001 | no | no | 0.48/0.50 | 20/21/1.00 | 0.0 nd | 0.0 nd | 1 0 | 0 0 | 1 0 | 0 0 | 21 24 | 6 8 | 5arm 3arm | 1 1 | nd nd | 0.15 0.19 | 2 2 | 1 | 1 | -1 | 0 |
| reads | miRBase family seed | ||
| seed | ----------------------UGUGACC--------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------GACCGUA------------------------------------------ | 0 | miR-360 |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------TTGTGACCGTTGTTACGGTC--------------------------------------------------------------------- | 20 | 1 | |
| cbr-miR-360 | ------------------------------------------------------------TGACCGTAATCCCGTTCACA-----A------------------------ | 21 | - |
| cbriggsae | CATAAAAAAGCGCCTAGGGTTTTGTGACCGTTGTTACGGTCAATTCATG-TCTGACACAATGACCGTAATCCCGTTCACA-----ACACCTTGTGTGGCTTGAATAATGA | ||
| cremanei | ---------------------TTGTGACCGTTGTTACGGTCAATTTCAT-TCAGAAGCTATGACCGTAATCCCGTTCACA-----A------------------------ | ||
| celegans | ---------------------TTGTGACCGTTGTTACGGTCAATTTGCAAATTGAAAAAATGACCGTAATCCCGTTCACA-----A------------------------ | ||
| cbrenneri | ----------GCATCAAGGTTTTGTGACCGTTGTTACGGTCATTTCAACATGTAAC----TGACCGTAATCCCGTTCACA-----ACACATTGTTTGT------------ | ||
| cjaponica | -------------GAAAGCTTTTGTGACCGTTGTTACGGTCAAAACATT-CCTG--GAAATGACCGTAGTTTCGTTCACA-----AAAGCTTTT---------------- | ||
| ppacificus | -----GAACTCGCCTGTGGAGTTGTGACCGTTGTTACGGGCACTGCATC-GATGCCGGGTTGCCCGTCCCCTCGGTTACACCTCGACTGAGTTT---------------- | ||
| ****************** ** ** **** ** * *** * | |||
| ------------------------------------------------------ ------------------------------ ------------------------------ | NM_014930 | ||
| ------------------------------------------------------ ------------------------------ ------------------------------ | NM_027552 | ||
| ------------------------------------------------------ ------------------------------ ------------------------------ | NM_022702 | ||
| ------------------------------------------------------ ------------------------------ ------------------------------ | NM_001019667 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++ | NM_011438 | ||
| cbriggsae | (((....((((((.((((((.((((((.((..((((((((((..(((.. ..))).....))))))))))..)).))))) ).)))))).))).))).....))). | 1.000 -36.70 | |
| cremanei | .(((((.((..((((((((((.((((.. ...))))...))))))))))..)).))))) . | 1.000 -23.90 | |
| celegans | .(((((.((..((((((((((.(((..........))).))))))))))..)).))))) . | 1.000 -23.20 | |
| cbrenneri | (((.(((.((.((((((.((..((((((((((.((((...)).)). ))))))))))..)).))))) ).)).)))..))) | 0.999 -26.80 | |
| cjaponica | ((((((((((((((.((..((((((((((...((.. ..)) ....))))))))))..)).))))) ))))))))) | 1.000 -32.40 | |
| ppacificus | (((((((...((.(((.((((((((.....((((((((((((.. ..)))..))).)))))).....)))))))).))).))))))))) | 1.000 -38.80 |
| cbriggsae | chromosome:chrX:11095209:11095312:1 | Opposite_strand|Intronic_coding|NM_014930|ZNF510 ## Opposite_strand|Intronic_non-coding|NM_027552|Kynu ## Same_strand|Intronic_non-coding|NM_011438|Sox12 ## {Repeats: no} ## {MIR: cbr-mir-360} |
| cremanei | chromosome:chrUn:1914768:1914911:-1 | Same_strand|Intronic_coding|NM_170227 |
| celegans | chromosome:chrX:5919093:5919236:1 | intergenic ## {MIR: cel-mir-360} |
| cbrenneri | chromosome:chrUn:38391520:38391598:-1 | intergenic |
| cjaponica | chromosome:chrUn:44027987:44028059:-1 | intergenic |
| ppacificus | chromosome:chrUn:153152215:153152302:-1 | Opposite_strand|Intronic_coding|NM_001060841 ## Same_strand|Intronic_coding|NM_031220 |
miRNAknown_rep_randfoldOK (2 loci)
cbr-mir-357
| absolute | AF16 |
| cbr-mir-357 3arm | 4 |
| normalized | AF16 |
| cbr-mir-357 3arm | 0.010 |
block1719 (miRBase cbr-mir-357-2) [miRNAknown_rep_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-357-2 | 0.001 | no | DNA | 0.41/0.45 | 20/22/1.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 24 | 11 | 3arm | 2 | nd | 0.18 | 1 | 4 | 1 | na | na |
| Member of family miR-357 (seed AAAUGCC): cbr-mir-357, cbr-mir-357 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------AAUGCCA--------------------------------------------------------- | 3 | novel |
| seed | -----------------------------------------------------------------------------------------AAAUGCC---------------------------------------------------------- | 1 | miR-357 |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------------------AAATGCCAGTCAT-TGACGGAAT------------------------------------------ | 22 | 3 | |
| ----------------------------------------------------------------------------------------AAAATGCCAGTCAT-TGACGG--------------------------------------------- | 20 | 1 | |
| cbr-miR-357 | ----------------------------------------------------------------------------------------AAAATGCCAGTCAT-TGACGGA-------------------------------------------- | 21 | - |
| cbriggsae | ----------------------CTACATCAGAAGAGACAGCGAATCCCGGCAATCACCGTGCATTTTCATCTACCAGAGGCACTAATGAAAATGCCAGTCAT-TGACGGAATTCG--------------TTGAATCTGGAATTAAAGCAT---- | ||
| cremanei | ------------------TCAACGATGTGCTGCCTAACAGCGGATTCCAGTAA-CTCTGAGCATATACATGAAGTTTCAAAAC-AATGTAAATGCCAGTCGT-TGCTGGAATTCG-------------------------ATAAGCACTCGTGA | ||
| celegans | TAGTAGTACTTCTGATATTTAACGCTGTACTACTCACCAGCGGATCCCTACAA-CGCTGCGCATATGCATGAACACAATGAA--AATGTAAATGCCAGTCGT-TGCAGGAGTTCGCATACAGTAGTAAAATGCGCCCAAACGGAGAACTTTTG- | ||
| cbrenneri | -------------------------------------------ATCCCTGTAA-TACTGTGCATATACATGTCATGTA---ACTAATGTAAATGCCAGTCGT-TGCAGGAAT------------------------------------------ | ||
| cjaponica | -------------------------------------------ATTC--GCGA-TGAAGCGCGTTTGCATTATTT------ACCGGTGCGAATGCCATTTTCATACAGAAA------------------------------------------- | ||
| ** * * * ** * * *** * ** ******* * * * * | |||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++ +++++++++++++++++++++ +++++ | NM_001087791 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001047975 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001858 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_213264 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_131292 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_080680 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001845 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_007739 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_181277 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001006951 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001081764 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001046199 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001005153 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001002980 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001014971 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_204790 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001082666 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++ +++++++++++++++++++++ +++++ | NM_079524 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++ +++++++++++++++++++++ +++++ | NM_206442 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++ +++++++++++++++++++++ +++++ | NM_206443 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001038742 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_080338 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_167026 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_167027 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_212528 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_201478 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_182968 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_033150 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_080629 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_000089 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++ +++++++++++++++++++++ +++++ | NM_005381 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001107100 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_000393 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_080681 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_004845 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_080680 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001844 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_080679 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001854 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_212579 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_080630 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_007736 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001083844 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_007738 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_031366 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_199214 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_009926 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_031362 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_031365 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_134452 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_000092 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_000091 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_078485 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001851 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001079992 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001130548 | ||
| cbriggsae | .....((...(((..((((((((.(((.((((.((.(.((((((((((...((...)).....))))))))))).)).)) )).))).))))) )))..))).)).......... | 1.000 -33.80 | |
| cremanei | ...((((.(((((.........((((((((((((( (.(((.((((.(((((...(((....))) .))))).)))))))..)) )))))))))))) ...))))))))).. | 0.948 -44.20 | |
| celegans | ....(((.((.(((........(((..(((((((.....(((((..(((.((( (((((.((((.(((((............ .))))).))))))).))) )).)))..)))))....)))))))....)))......))))).))).... | 0.930 -45.46 | |
| cbrenneri | ...((((((( (((((.((((.(((((........ ....))))).)))))))).)) ))))))... | 0.999 -24.10 | |
| cjaponica | .((( ...( (((((.(((((((((((.... ...)))))))))))...))))))...))). | 1.000 -18.70 |
| cbriggsae | chromosome:chrIII:6833082:6833194:1 | Same_strand|Intronic_coding|NM_001087791|col2a1b ## Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_213264|col9a1 ## {Repeats: no} ## {MIR: cbr-mir-357-2} |
| cremanei | chromosome:chrUn:25671347:25671454:-1 | Opposite_strand|Intronic_coding|NM_199607 |
| celegans | chromosome:chrV:8580501:8580649:-1 | Opposite_strand|Intronic_coding|F25G6.2 ## {Repeats: PALTTAA3_CE -402 200 1 class=DNA} ## {MIR: cel-mir-357} |
| cbrenneri | chromosome:chrUn:174196371:174196523:-1 | intergenic |
| cjaponica | chromosome:chrUn:43827781:43827933:1 | Opposite_strand|Intronic_coding|NM_072216 ## {SimpF: trf} |
block3640 (miRBase cbr-mir-357-1) [miRNAknown_rep_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-357-1 | 0.001 | no | DNA | 0.41/0.45 | 20/22/1.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 24 | 11 | 3arm | 2 | nd | 0.18 | 1 | 4 | 1 | na | na |
| Member of family miR-357 (seed AAAUGCC): cbr-mir-357, cbr-mir-357 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------AAUGCCA--------------------------------------------------------- | 3 | novel |
| seed | -----------------------------------------------------------------------------------------AAAUGCC---------------------------------------------------------- | 1 | miR-357 |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------------------AAATGCCAGTCAT-TGACGGAAT------------------------------------------ | 22 | 3 | |
| ----------------------------------------------------------------------------------------AAAATGCCAGTCAT-TGACGG--------------------------------------------- | 20 | 1 | |
| cbr-miR-357 | ----------------------------------------------------------------------------------------AAAATGCCAGTCAT-TGACGGA-------------------------------------------- | 21 | - |
| cbriggsae | ----------------------CTACATCAGAAGAGACAGCGAATCCCGGCAATCACCGTGCATTTTCATCTACCAGAGGCACTAATGAAAATGCCAGTCAT-TGACGGAATTCG--------------TTGAATCTGGAATTAAAGCAT---- | ||
| cremanei | ------------------TCAACGATGTGCTGCCTAACAGCGGATTCCAGTAA-CTCTGAGCATATACATGAAGTTTCAAAAC-AATGTAAATGCCAGTCGT-TGCTGGAATTCG-------------------------ATAAGCACTCGTGA | ||
| celegans | TAGTAGTACTTCTGATATTTAACGCTGTACTACTCACCAGCGGATCCCTACAA-CGCTGCGCATATGCATGAACACAATGAA--AATGTAAATGCCAGTCGT-TGCAGGAGTTCGCATACAGTAGTAAAATGCGCCCAAACGGAGAACTTTTG- | ||
| cbrenneri | -------------------------------------------ATCCCTGTAA-TACTGTGCATATACATGTCATGTA---ACTAATGTAAATGCCAGTCGT-TGCAGGAAT------------------------------------------ | ||
| cjaponica | -------------------------------------------ATTC--GCGA-TGAAGCGCGTTTGCATTATTT------ACCGGTGCGAATGCCATTTTCATACAGAAA------------------------------------------- | ||
| ** * * * ** * * *** * ** ******* * * * * | |||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_001106714 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++ +++++++++++++++++++++ +++++ | NM_001028857 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++ +++++++++++++++++++++ +++++ | NM_001028858 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++ +++++++++++++++++++++ +++++ | NM_001062304 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++ +++++++++++++++++++++ +++++ | NM_029761 | ||
| ..... ................................................................................ ............ ..................... ..<<< | NM_072809 | ||
| ----- -------------------------------------------------------------------------------- ------------ --------------------- ----- | NM_072806 | ||
| cbriggsae | .....((...(((..((((((((.(((.((((.((.(.((((((((((...((...)).....))))))))))).)).)) )).))).))))) )))..))).)).......... | 1.000 -33.80 | |
| cremanei | ...((((.(((((.........((((((((((((( (.(((.((((.(((((...(((....))) .))))).)))))))..)) )))))))))))) ...))))))))).. | 0.948 -44.20 | |
| celegans | ....(((.((.(((........(((..(((((((.....(((((..(((.((( (((((.((((.(((((............ .))))).))))))).))) )).)))..)))))....)))))))....)))......))))).))).... | 0.930 -45.46 | |
| cbrenneri | ...((((((( (((((.((((.(((((........ ....))))).)))))))).)) ))))))... | 0.999 -24.10 | |
| cjaponica | .((( ...( (((((.(((((((((((.... ...)))))))))))...))))))...))). | 1.000 -18.70 |
| cbriggsae | chromosome:chrV:1213904:1214016:-1 | Opposite_strand|Intronic_non-coding|NM_001106714|Slc7a15 ## Same_strand|Intronic_non-coding|NM_001028857|K04F1.14 ## Same_strand|Intronic_coding|NM_001028858|K04F1.14 ## {Repeats: no} ## {MIR: cbr-mir-357-1} |
| cremanei | chromosome:chrUn:25671347:25671454:-1 | Opposite_strand|Intronic_coding|NM_199607 |
| celegans | chromosome:chrV:8580501:8580649:-1 | Opposite_strand|Intronic_coding|F25G6.2 ## {Repeats: PALTTAA3_CE -402 200 1 class=DNA} ## {MIR: cel-mir-357} |
| cbrenneri | chromosome:chrUn:174196371:174196523:-1 | intergenic |
| cjaponica | chromosome:chrUn:43827781:43827933:1 | Opposite_strand|Intronic_coding|NM_072216 ## {SimpF: trf} |
miRNAknown_cloningHIGH_loopOverlap_nonpairedHIGH (1 loci)
cbr-mir-242
| absolute | AF16 |
| cbr-mir-242 5arm | 71 |
| normalized | AF16 |
| cbr-mir-242 5arm | 0.185 |
block3348 (miRBase cbr-mir-242) [miRNAknown_cloningHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-242 | 0.108 | no | no | 0.48/0.50 | 20/21/1.00 | 0.0 | 0.0 | 71 | 0 | 1 | 0 | 7 | -1 | 5arm_loop | 1 | nd | 0.35 | 2 | 71 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------UGCGUAG---------------------------------------------- | 71 | miR-242 |
| len | cloning frequencies | ||
| AF16 | |||
| -------TTGCGTAGGCCTTTGTTTCG---------------------------------- | 20 | 71 | |
| cbr-miR-242 | -------TTGCGTAGGCCTTTGTTTCGA--------------------------------- | 21 | - |
| cbriggsae | AAGAATATTGCGTAGGCCTTTGTTTCGAAAGACCCAAAAATTGTTCGCAGCAATCTCCTTC | ||
| cjaponica | -------TTGCGTAGCGTTTTTTGGCAATTGACATCAAAA-----CGCA-------CGCTC | ||
| ******** *** * * * *** **** **** * ** | |||
| cbriggsae | (((...(((((((..((.((((..((....))..))))....))..)).)))))...))). | 1.000 -12.30 | |
| cjaponica | ..((((.(((((((.((........))..)))) )))) ))).. | 1.000 -13.90 |
| cbriggsae | chromosome:chrUn:6980100:6980160:-1 | {Repeats: no} ## {MIR: cbr-mir-242} |
| cjaponica | chromosome:chrUn:148382022:148382122:1 | Opposite_strand|Intronic_coding|NM_064309 |
miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK_bulgeHIGH (1 loci)
cbr-mir-239a
| absolute | AF16 |
| cbr-mir-239a 5arm | 62 |
| cbr-mir-239a 3arm | 2 |
| normalized | AF16 |
| cbr-mir-239a 5arm | 0.162 |
| cbr-mir-239a 3arm | 0.005 |
sblock87 (miRBase cbr-mir-239a) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-239a | 0.001 | no | no | 0.33/0.35 | 18/23/0.97 | 0.0 0.0 | 0.0 0.0 | 60 2 | 0 0 | 1 1 | 0 0 | 28 24 | 5 9 | 5arm 3arm | 1 1 | nd nd | 0.22 0.22 | 4 3 | 64 | 1 | 1 | -3 |
| Member of family miR-239a (seed UUGUACU): cel-mir-238, cbr-mir-239a, block2886_novel |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------UUGUACU--------------------------------------------------------------------------------------- | 60 | miR-239a |
| seed | -------------------------------------------------------------------------------------------AGAAUCU------------------------------------------ | 2 | novel |
| seed | --------------------------------------------------ACUACAA----------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-239a | -----------------------------------------T----TTGTACTACAATTAGGTACTG--G---------------------------------------------------------------------- | 23 | 60 |
| -------------------------------------------------TACTACAATTAGGTACTG--GA--------------------------------------------------------------------- | 20 | 2 | |
| ------------------------------------------------------------------------------------------CAGAATCTATACTAGTAC-------------------------------- | 18 | 2 | |
| cbriggsae | -------------GAGAATGACGATCCAAGTTTATGCGATTT----TTGTACTACAATTAGGTACTG--GACACCAGCAGCGAGTGTATCCAGAATCTATACTAGTACAAAAATAGCTAACAGGATTAAGAT-------- | ||
| cremanei | ----------------------AATCCAAGAT--TGCGATTT----TTGTACTACACATAGGTACTG--GACACTGAGATT---TGTATCCAGAATCTATTCTAGTGCAAAAATTGCTCTGGATT--------------- | ||
| celegans | GCTTGTCACTCAGTCAAATAACTCTACACGTT--TGCAATTT----TTGTACTACACATAGGTACTG--GACAATTTTCAA-AATATATCCAGTGTCTAGTCTAGTGCAAACATTGCTCGGTGTTGTTTGAAAAATAAGC | ||
| cbrenneri | ----------------TTGATATAACCTGAAA--TGCGGTTT----TTGTACTACACATAGGTACTG--GAAAACTTACCACAGATTATCCAGTGCTTGGTCTAGTGCAAGAATTGCTAAGGGGGTTTTCAA-------- | ||
| cjaponica | -----------------------AGGCAGCCT--TGCAGTAT----TTGTACTACACATAGGTACTGGTGAAAACGTG------TTTAACCAGTGCCTGGTCTAGTGCAAGCACTGCTCCAAGCCTATTTAGC------- | ||
| ppacificus | -------------------------ATTGTAC--TGCAATTTCACGTTGTA----ACCGGATTATTGGGGACAAACTGAAGTAACTTTTACAGA---------------------------------------------- | ||
| *** * * ***** * ** ** ** * * *** | |||
| +++++ +++++++++++++++++++++++++++++ +++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001099298 | ||
| ----- ----------------------------- --------------------- --------------------------------------------------------------- ----- | NM_077585 | ||
| cbriggsae | .........(((((..(((...((.(((( ((((((((....(((((.((( ((((((......).)))..))))).)))))...)))))))))))).)).))).)))))..... | 1.000 -33.80 | |
| cremanei | (((((.(((. .((((((( ((((((((...((((((.((( ((.((....... .)).))))).))))))..))))))))))))))))))))))) | 1.000 -38.10 | |
| celegans | ((((((.......(((((((((...((.((.. .(((((.( ((((((((.((.(((..(((( ((.......... ......))))))..))))).))))))))).))))).)))))))))))))...)))))) | 0.999 -43.29 | |
| cbrenneri | .(((...(((((.... .((((((( ((((((((.((.((((((((( ((.((((......)).)).))))))))))))).))))))))))))))).....))))).))). | 1.000 -42.40 | |
| cjaponica | ((((..... .(((((.( ((((((((.((.(((((((((((..(((.... ))).))))))))))))).))))))))).))))).....))))....... | 1.000 -43.20 | |
| ppacificus | .(((((. ....((((((..((((. .((((....))))..))))..))))))......))))). | 0.978 -13.00 |
| cbriggsae | chromosome:chrX:15175306:15175418:1 | Same_strand|Intronic_non-coding|NM_001099298|Scn2a1 ## Opposite_strand|Intronic_non-coding|NM_077585|Y62H9A.5 ## {Repeats: no} ## {MIR: cbr-mir-239a} |
| cremanei | chromosome:chrUn:26917103:26917194:-1 | intergenic |
| celegans | chromosome:chrX:11792345:11792475:1 | intergenic ## {MIR: cel-mir-239a} |
| cbrenneri | chromosome:chrUn:34416635:34416742:-1 | intergenic |
| cjaponica | chromosome:chrUn:61791080:61791177:-1 | intergenic |
| ppacificus | chromosome:chrUn:159745831:159745983:1 | Same_strand|Intronic_coding|NM_066967 |
| Back to summary page | other miRBase miRNAs: | Page 1 | Page 2 |
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