miR-Intess: classification

other hairpins

block1374 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.112	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	13	2	3arm	5	nd	0.14	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------UUGAGAU--------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------GTTGAGATGGTAGTTAACAGT-------------	21	1
cbriggsae	tgatgagcccacactcctagcgaactgtgactgctatgcaacctttggctccttccGTTGAGATGGTAGTTAACAGTggattggttcaca
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	----------------------------------------------------------------------------------------------------	NM_206876
	----------------------------------------------------------------------------------------------------	NM_002709
	----------------------------------------------------------------------------------------------------	NM_175389
	----------------------------------------------------------------------------------------------------	NM_172632
	----------------------------------------------------------------------------------------------------	NM_202770
cbriggsae	...((((((.....(((......((((((((((((((.((((....((......))))))..)))))))))).)))))))..))))))..	0.970 -25.10

cbriggsae

chromosome:chrIII:4910852:4910941:-1

Same_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_non-coding|NM_206876|PPP1CB ## Opposite_strand|Intronic_coding|NM_202770|AT4G01985 ## {Repeats: no}

block1435 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.260	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	12	5	5arm	1	nd	0.15	2	1	1	na	na

		reads	miRBase family seed
seed	-------------UUGUAGU----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------ATTGTAGTTCATTTCCCGCC----------------------------------------------------	20	1
cbriggsae	cgccattttattATTGTAGTTCATTTCCCGCCtctgctgtggtgccttcggtagaagtgcagctgaacaatgatacacttgagt
	************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060039
	----------------------------------------------------------------------------------------------	NM_001078568
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001075211
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021863
	----------------------------------------------------------------------------------------------	NM_001108252
	----------------------------------------------------------------------------------------------	NM_068288
	----------------------------------------------------------------------------------------------	NM_059518
	----------------------------------------------------------------------------------------------	NM_067241
cbriggsae	.((((...(((((((((((((((((((..(((...((......))....))).)))))).))))..)))))))))....)).))	0.840 -19.50

cbriggsae

chromosome:chrIII:7748042:7748125:-1

Same_strand|Intronic_coding|NM_060039|T06D10.2 ## Opposite_strand|Intronic_coding|NM_001078568|LOC780716 ## Same_strand|Intronic_non-coding|NM_001075211|SNF8 ## Opposite_strand|Intronic_non-coding|NM_001108252|RGD1562211 ## {Repeats: no}

block1551 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.283	no	no	0.60/0.60	20/20/1.00	0.0	0.0	2	0	1	0	20	4	5arm	1	nd	0.30	2	2	1	na	na

		reads	miRBase family seed
seed	---------------------GAGAACU----------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------GGAGAACTGGGTTTGCGACG----------------------------------------------------	20	2
cbriggsae	agcaaaattagcgaattggtGGAGAACTGGGTTTGCGACGacgacaggttcgacgatgtgttccccagtgtccttgttggcattcgatgcta
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	NM_001122952
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	------------------------------------------------------------------------------------------------------	NM_007496
	------------------------------------------------------------------------------------------------------	NM_010905
	------------------------------------------------------------------------------------------------------	NM_001122953
	------------------------------------------------------------------------------------------------------	NM_064924
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067049
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064451
	------------------------------------------------------------------------------------------------------	NM_001045987
	------------------------------------------------------------------------------------------------------	NM_001044671
	------------------------------------------------------------------------------------------------------	NM_001122952
	------------------------------------------------------------------------------------------------------	NM_012330
	------------------------------------------------------------------------------------------------------	NM_010905
	------------------------------------------------------------------------------------------------------	NM_001107912
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065135
cbriggsae	((((......((.(((....(((..((((((..((((.((.(((.....))).)).))))...)))))).)))..))).))......)))).	0.980 -26.40

cbriggsae

chromosome:chrIII:12094756:12094847:-1

Opposite_strand|Intronic_non-coding|NM_001122952|Nfia ## Same_strand|Intronic_non-coding|NM_075505|psa-1 ## Opposite_strand|Intronic_coding|NM_064924|BE0003N10.3 ## {Repeats: no}

block1652 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.031	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	18	12	3arm	1	nd	0.20	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------UGGUACU------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------GTGGTACTCCTGGTTCATCT------------------	20	1
cbriggsae	catccgaatgctccagatgaatttcagcatcatgaccagcagtgacaaatctcaattgcttttGTGGTACTCCTGGTTCATCTgttcgtcgctgtgggtgt
	*****************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214211
	---------------------------------------------------------------------------------------------------------------	NM_172925
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001035248
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057428
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001062274
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005123
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001091987
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069872
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069872
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205075
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037113
	---------------------------------------------------------------------------------------------------------------	NM_133195
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022613
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001019821
	---------------------------------------------------------------------------------------------------------------	NM_058246
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003333
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003333
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033930
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076363
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124194
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126212
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001009286
	---------------------------------------------------------------------------------------------------------------	NM_204254
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020265
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<---------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_065747
cbriggsae	((((((...((..((((((((((..((.(((((((..((((((((......))).))))).))))))).))...))))))))))......))..)))))).	1.000 -30.00

cbriggsae

chromosome:chrIII:3223892:3223992:1

Same_strand|Intronic_coding|NM_214211|UBA52 ## Opposite_strand|Intronic_non-coding|NM_172925|Klhl31 ## Same_strand|Intronic_non-coding|NM_020265|Dkk2 ## Opposite_strand|Boundary_coding|NM_065747|Y32H12A.5 ## {Repeats: no}

block1680 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	15	7	3arm	1	nd	0.19	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------ACCAUGG----------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------GACCATGGATCAGCTCATCGT---------------	21	1
cbriggsae	gcagctggtgtcgatgtgacgattgagccatgggtgatctttccgaagccgtGACCATGGATCAGCTCATCGTcgaacactggaatgt
	****************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066813
	--------------------------------------------------------------------------------------------------	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206876
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002709
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175389
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172632
	--------------------------------------------------------------------------------------------------	NM_020180
	--------------------------------------------------------------------------------------------------	NM_001025087
	--------------------------------------------------------------------------------------------------	NM_001025088
	--------------------------------------------------------------------------------------------------	NM_001025089
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------------------------	NM_059650
cbriggsae	(((.(((((((((((((((...((((.((((((.....(((....)))......)))))).)))).))).)))))).))))))..)))	0.950 -28.80

cbriggsae

chromosome:chrIII:4951387:4951474:1

Same_strand|Intronic_non-coding|NM_066813|R10E12.2 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_non-coding|NM_020180|BRUNOL4 ## {Repeats: no}

block1870 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.428	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	5	2	3arm	1	nd	0.29	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------AGUUUGU------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------TAGTTTGTTGTTAACATGGTG-----	21	1
cbriggsae	ggaacttgttaaaacttttttgcaacttttcataatgaTAGTTTGTTGTTAACATGGTGatcca
	****************************************************************
	--------------------------------------------------------------------------	NM_070284
cbriggsae	((((((((((((.........((((((..((.....)).)))).))..)))))).)))..))).	0.950 -8.80

cbriggsae

chromosome:chrIII_random:45034:45097:1

Opposite_strand|Intronic_coding|NM_070284|egl-23 ## {Repeats: no}

block1874 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.060	no	no	0.62/0.62	21/21/1.00	0.0	0.0	1	0	1	0	23	9	3arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------UUGGUGG------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------ATTGGTGGTCCGCCAGGAGCT-----------------------	21	1
cbriggsae	ggtggtggcatgtatggtggtcctcctggccgattgtactgtggtggtccttgtggatgtcccATTGGTGGTCCGCCAGGAGCTgaaataatcattgtccttaatct
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	NM_001033345
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069815
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034977
	-------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<--------------------------------	NM_067333
cbriggsae	(((...((((...(((((..((((((((((.(((..((((((((..((((....))))...)))).))))))).))))))))..))....))))))).))...))).	0.970 -34.30

cbriggsae

chromosome:chrIII_random:327550:327656:1

Opposite_strand|Intronic_coding|NM_001033345|Gm216 ## Same_strand|Intronic_coding|NM_069815|T22B3.3 ## Same_strand|Intronic_non-coding|NM_001034977|pi4kb ## Opposite_strand|Boundary_coding|NM_067333|cpf-2 ## {Repeats: no}

block1988 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.141	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	35	4	3arm	1	nd	0.27	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------AUCCAGC-------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------GATCCAGCTCTAGTCAATGGTG-----------------------------------	22	1
cbriggsae	tagtgctggcttggatgctccttgaacagatgtacttggggatctggatggtcttctgaatGATCCAGCTCTAGTCAATGGTGatctggattgtctaggtggtccagaagtcgatgct
	**********************************************************************************************************************
cbriggsae	.(((..((((((((((...(((.((.(((((.((((((.(((.((((((..((....))...)))))).)))...))..))))))))).....)).)))..)))))..)))))..)))	0.860 -35.10

cbriggsae

chromosome:chrIV:2165038:2165155:-1

{Repeats: no}

block2004 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.021	no	no	0.35/0.35	23/23/1.00	0.0	0.0	2	0	1	0	23	5	3arm	1	nd	0.26	3	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UACAAGU--------------------------------------	2	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------TTACAAGTTTGATGGAGTTGTTG-----------------------	23	2
cbriggsae	aatattctcagtttcagaacttttttgaaatcgtaaagattgttataggaatagTTACAAGTTTGATGGAGTTGTTGaagattattgaggtgagagtatg
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060112
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020714
cbriggsae	.(((((((((.(((((((((((..(((((...((((..(((........)))..))))...)))))..))))).))))))..........))))))))).	0.820 -20.50

cbriggsae

chromosome:chrIV:2452274:2452373:-1

Same_strand|Intronic_non-coding|NM_060112|skr-1 ## {Repeats: no}

block2045 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.807	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	21	8	3arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UUUUUCG----------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------TTTTTTCGAGTTATGGCGCGT---------------------	21	1
cbriggsae	attcaaaaatcacagtttcaaaaagctactaattttaaagtttacaaggagtgaatgaTTTTTTCGAGTTATGGCGCGTtcaaagttgatttccaggagt
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	--------------------------------------------------------------------------------------------------------------	NM_198022
	--------------------------------------------------------------------------------------------------------------	NM_020066
cbriggsae	((((..((((((...(((.((...((((.((((((.(((((((((.....)))))).....))).))))))))))...)).)))..))))))....))))	0.740 -12.60

cbriggsae

chromosome:chrIV:3211748:3211847:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

Back to summary page

other hairpins:

Page 1

Page 4

Jump 10 pages forward

Page 70

miR-Intess™

block1374 [novel]

block1435 [novel]

block1551 [novel]

block1652 [novel]

block1680 [novel]

block1870 [novel]

block1874 [novel]

block1988 [novel]

block2004 [novel]

block2045 [novel]