C.briggsae small RNAs

miR-Intess™

miR classification

Alignments

other hairpins

novel_shortStem_randfoldOK_bulgeHIGH (1 loci)

novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)

block1914 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	1	30	5arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	--UCUCAAU-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-TTCTCAATCGTCTCAACCAG-------------------------------------------------------------------------------------	20	1
cbriggsae	aTTCTCAATCGTCTCAACCAGagttgcacggacagggaaatttttgcaacggacaacggacagcggacaacggactgtccgtgcaacactggtctcaacgcgggaa
	**********************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------	NM_061817
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182297
cbriggsae	.(((((...(((....(((((.(((((((((((((.......(((((..((.....))....))))).......))))))))))))).)))))....))).)))))	0.980 -43.04

cbriggsae

chromosome:chrIV:997052:997157:-1

Opposite_strand|Intronic_non-coding|NM_061817|cct-3 ## Same_strand|Intronic_non-coding|NM_182297|B0546.4 ## {Repeats: no}

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