other hairpins
novel_lenNOK_multiarm (1 loci)
novel_lenNOK_multiarm_DicerNOK (1 loci)
sblock72 [novel_lenNOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.183 | no | no | 0.32/0.41 | 19/22/0.33 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 35 28 | 2 6 | 5arm 3arm | 2 2 | nd nd | 0.21 0.23 | 3 2 | 3 | 1 | 4 | 10 |
| reads | miRBase family seed | ||
| seed | ------------------------------------UAUAUAC--------------------------------------------------------------------------- | 2 | novel |
| seed | ---------------------------------------------------------------------UUUAUGU------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------TTATATACCGTGTAGTTGT---------------------------------------------------------------- | 19 | 2 | |
| --------------------------------------------------------------------CTTTATGTGTGAGTAGCTAAGC---------------------------- | 22 | 1 | |
| cbriggsae | cgttggggtctatggtagttttaatttttagtagtTTATATACCGTGTAGTTGTagccttttttgtaaCTTTATGTGTGAGTAGCTAAGCcttagaattttttgtaagtttctgtgcg | ||
| ********************************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001087279 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_166414 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001046332 | ||
| cbriggsae | (((.((((..(((((.((((((((..((((((..((((((...((((.((((((((......)))))))).))))))))))..))))))..))))))))..)))))..))))...))) | 1.000 -21.30 |
| cbriggsae | chromosome:chrX:4787761:4787878:-1 | Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_non-coding|NM_166414|Act57B ## {Repeats: no} |
novel_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
block1412 [novel_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.44/0.44 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 7 | 5arm | 2 | nd | 0.40 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------GAGAUAC--------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------TGAGATACAGCGGTCGTTTGATACT---------------------------------------------------------------- | 25 | 1 | |
| cbriggsae | ttcagattccaggtcttctgagagcTGAGATACAGCGGTCGTTTGATACTcagcgagcctgactcagcttcaaacgagtgtatcttggctctcggttgacctagaaatttgggc | ||
| ****************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047975 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_001115091 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_001085641 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_080500 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_080504 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_169728 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_169729 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_169730 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_206497 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_131119 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_171075 | ||
| ---------------------------------------------------------------------------------------------------------------------------- | NM_171076 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_065552 | ||
| cbriggsae | .((((((((.(((((..((((((((..(((((((....((((((((.....((((((.....))).))))))))))).)))))))..))))))))..))))).))).))))).. | 1.000 -53.20 |
| cbriggsae | chromosome:chrIII:7036389:7036502:-1 | Same_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_coding|NM_001115091|hoxb7a ## {Repeats: no} |
novel_lenNOK_shortStem_loopOverlap (1 loci)
block2329 [novel_lenNOK_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.649 | no | no | 0.31/0.31 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -2 | 5arm_loop | 1 | nd | 0.27 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----AUUAGAG-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----GATTAGAGTTTAAGTCTCAAAATGCT-------------------------------------------------- | 26 | 1 | |
| cbriggsae | cattGATTAGAGTTTAAGTCTCAAAATGCTatttttcccgttttgattttgatacgatgacctggaaattattttaatga | ||
| ******************************************************************************** | |||
| ------------------------------------------------------------------------------------------ | NM_065289 | ||
| ------------------------------------------------------------------------------------------ | NM_064155 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061965 | ||
| ------------------------------------------------------------------------------------------ | NM_075402 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001024205 | ||
| ------------------------------------------------------------------------------------------ | NM_001026513 | ||
| ------------------------------------------------------------------------------------------ | NM_001094113 | ||
| ------------------------------------------------------------------------------------------ | NM_001091618 | ||
| ------------------------------------------------------------------------------------------ | NM_001034557 | ||
| ------------------------------------------------------------------------------------------ | NM_075282 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_064619 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001028390 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001124458 | ||
| cbriggsae | ((((((.(((..((((.(((((((((((..........))))))))............))).))))..)))..)))))). | 0.720 -10.10 |
| cbriggsae | chromosome:chrIV:14453226:14453305:-1 | Opposite_strand|Intronic_non-coding|NM_065289|Y53G8AR.9 ## Same_strand|Intronic_non-coding|NM_061965|F08D12.1 ## {Repeats: no} |
novel_lenNOK_shortStem_randfoldOK (1 loci)
block734 [novel_lenNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.35/0.35 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 5 | 3arm | 1 | nd | 0.19 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------AUUAAAA-------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------GATTAAAATGGTGACAAAGCAGAATC-- | 26 | 1 | |
| cbriggsae | tgatttctttgcttttctttccaaactaatgagtgtcacggcattGATTAAAATGGTGACAAAGCAGAATCaa | ||
| ************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047975 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047939 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_064155 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_101724 | ||
| ----------------------------------------------------------------------------------- | NM_001011629 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001055069 | ||
| ----------------------------------------------------------------------------------- | NM_001090075 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_202130 | ||
| cbriggsae | ((((((...((((((((...(((...((((.(((((....))))).))))...))).)).)))))))))))). | 1.000 -19.90 |
| cbriggsae | chromosome:chrII:9067061:9067133:-1 | Same_strand|Intronic_coding|NM_001047975|LOC683871 ## Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_001090075|MGC69046 ## {Repeats: no} |
novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
block414 [novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 38 | 5arm | 1 | nd | 0.39 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---UUUGCUG------------------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --GTTTGCTGGTTGGTTCAG-------------------------------------------------------------------------------------------------- | 18 | 1 | |
| cbriggsae | caGTTTGCTGGTTGGTTCAGgcttgagacttgagaagattgctcacttacgagattcgatatacgtccgtttcttggagcatcttccatctcaagactgaactcttccagatctctgg | ||
| ********************************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_067602 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_067049 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_067650 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001047223 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001047222 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_061879 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_067617 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_078408 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_171570 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001129093 | ||
| cbriggsae | (((....((((..(((((((.(((((((..((.(((((.(((((.....(((((..((.........))..)))))))))))))))))))))))).)))))))...))))....))). | 1.000 -47.20 |
| cbriggsae | chromosome:chrI:10145441:10145558:1 | Opposite_strand|Intronic_coding|NM_067602|Y55F3BR.2 ## Same_strand|Intronic_non-coding|NM_067049|Y47D3A.21 ## Opposite_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## Same_strand|Intronic_coding|NM_078408|C53C11.4 ## {Repeats: no} |
novel_multiarm_DicerNOK_shortStem_bulgeHIGH (1 loci)
sblock33 [novel_multiarm_DicerNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.098 | no | no | 0.52/0.54 | 23/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 4 0 | 4 15 | 5arm 3arm | 1 1 | nd nd | 0.21 0.41 | 4 4 | 3 | 1 | 12 | 4 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------AUGGGGG--------------- | 2 | novel |
| seed | -----UCGUCCU----------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------GATGGGGGATCCGACCAAGTATT | 23 | 2 | |
| ----GTCGTCCTGGTCGTTCACATTGGT------------------------------------------------- | 24 | 1 | |
| cbriggsae | cttcGTCGTCCTGGTCGTTCACATTGGTaacgagagaagcggcgtgcagtgaatGATGGGGGATCCGACCAAGTATT | ||
| ***************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001028998 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001028999 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001029004 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001029003 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001029002 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001029001 | ||
| --------------------------------------------------------------------------------------- | NM_064155 | ||
| --------------------------------------------------------------------------------------- | NM_001122952 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_028763 | ||
| --------------------------------------------------------------------------------------- | NM_065922 | ||
| --------------------------------------------------------------------------------------- | NM_010905 | ||
| --------------------------------------------------------------------------------------- | NM_065923 | ||
| --------------------------------------------------------------------------------------- | NM_068002 | ||
| --------------------------------------------------------------------------------------- | NM_065190 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_067159 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_175692 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001093474 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061965 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061817 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_075459 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_067160 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_067659 | ||
| cbriggsae | (((.((((((((.(((((((((....(((.((.......))...))).))))))))).))))...)))).))).... | 0.560 -25.20 |
| cbriggsae | chromosome:chrIII:11329207:11329283:-1 | Same_strand|Intronic_non-coding|NM_001028998|unc-62 ## Opposite_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Opposite_strand|Intronic_coding|NM_065922|C05D10.4 ## Same_strand|Intronic_coding|NM_067659|Y104H12BL.1 ## {Repeats: no} |
novel_multiarm_DicerNOK_shortStem_randfoldOK (1 loci)
sblock82 [novel_multiarm_DicerNOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.56 | 18/21/0.75 | 0.0 0.0 | 1.0 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 3 2 | 14 14 | 5arm 3arm | 2 2 | nd nd | 0.33 0.24 | 4 2 | 4 | 1 | -1 | 2 |
| reads | miRBase family seed | ||
| seed | ----AUGCAUG------------------------------------------------------------------- | 2 | novel |
| seed | --------------------------------------------------------AACUAAG--------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------------------AAACTAAGGGGTACGTATCGT-- | 21 | 2 | |
| ---GATGCATGAGCCCTAGAGTC------------------------------------------------------- | 20 | 1 | |
| ---GATGCATGAGCCCTAGAG--------------------------------------------------------- | 18 | 1 | |
| cbriggsae | tacGATGCATGAGCCCTAGAGTCccatgctgtgtagttacaactacacggtatatAAACTAAGGGGTACGTATCGTac | ||
| ****************************************************************************** | |||
| ---------------------------------------------------------------------------------------- | NM_011978 | ||
| cbriggsae | ((((((((....(((((..(((...((((((((((((....))))))))))))....)))..)))))..)))))))). | 1.000 -33.80 |
| cbriggsae | chromosome:chrX:14750344:14750421:1 | Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {Repeats: no} ## {SimpF: trf} |
novel_randfoldOK_bulgeHIGH (1 loci)
block838 [novel_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 29 | 4 | 3arm | 1 | nd | 0.24 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------AAUUUUC------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------GAATTTTCGGAATTTTAGGGC----------------------------- | 21 | 1 | |
| cbriggsae | taaacaaaccttcattagtagagctttttctgagaaaattctggaaaaattcaGAATTTTCGGAATTTTAGGGCgatatataaatctaatggggttaatttaa | ||
| ******************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001122953 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001011629 | ||
| ----------------------------------------------------------------------------------------------------------------- | NM_001044671 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001122952 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_010905 | ||
| ----------------------------------------------------------------------------------------------------------------- | NM_177366 | ||
| ----------------------------------------------------------------------------------------------------------------- | NM_075132 | ||
| ----------------------------------------------------------------------------------------------------------------- | NM_008091 | ||
| ----------------------------------------------------------------------------------------------------------------- | NM_001084509 | ||
| cbriggsae | ((((..((((.(((((((((..(((((((((((((..((((((((....))))))))))))))))....)))))..)).......)))))))))))..)))). | 0.980 -26.41 |
| cbriggsae | chromosome:chrII:13600557:13600659:-1 | Same_strand|Intronic_non-coding|NM_001122953|Nfia ## Opposite_strand|Intronic_non-coding|NM_001044671|MAF ## {Repeats: no} |
novel_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
block5052 [novel_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 5 | 30 | 3arm | 1 | nd | 0.48 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------CUUGAGA------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------------------------------------------ACTTGAGACATTTTCTCACAC----- | 21 | 1 | |
| cbriggsae | tggataggatgacttgtctcgttttcattttcagagattgggatgtgaaatcaattttatcaccttcaaattctgaaaatgattacACTTGAGACATTTTCTCACACatcca | ||
| **************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001004313 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_008873 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001088391 | ||
| cbriggsae | .((((..((.((..((((((((..((((((((((((.(((((..((((((......)).)))).))))).))))))))))))..))....))))))..)).))....)))). | 0.850 -34.10 |
| cbriggsae | chromosome:chrX:14335091:14335202:1 | Same_strand|Intronic_non-coding|NM_001004313|TMEM220 ## {Repeats: no} |
novel_shortStem_randfoldOK_bulgeHIGH (1 loci)
block3617 [novel_shortStem_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.35/0.35 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 2 | 5arm | 1 | nd | 0.22 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -UUAAACA-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| GTTAAACAGTACAGAATCCATCT----------------------------------------- | 23 | 1 | |
| cbriggsae | GTTAAACAGTACAGAATCCATCTtcagcagcttgattcgaagatgaaactgttcttgtttgaca | ||
| **************************************************************** | |||
| cbriggsae | (((((((((.((((....(((((((.............)))))))...))))..))))))))). | 1.000 -19.12 |
| cbriggsae | chromosome:chrUn:7196540:7196603:1 | {Repeats: no} |
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