miR-Intess: classification

other hairpins

block704 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.301	no	no	0.12/0.12	24/24/1.00	0.0	0.0	2	0	1	0	30	4	3arm	1	nd	0.25	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------AUUCAAA----------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------------GATTCAAAAAATAATGTAATAAAT------------------------------	24	2
celegans	gaaagacggagattattgttgcaacattaatattatgttcattttgaaaaaaatatattttcGATTCAAAAAATAATGTAATAAATaatttagttaacagttcgattctgactttt
	********************************************************************************************************************
celegans	(((((.(((((...((((((((...((((.(((((((((..(((((((..(((.....)))...)))))))...)))))))))..))))...)).))))))....))))).)))))	0.910 -16.60

celegans

chromosome:I:1657494:1657609:1

intergenic ## {SimpF: WRM0616dG01 1 fosmid}

Opposite_strand|Boundary_non-coding|T26E3.7|T26E3.7 ## T26E3.7|protein_coding|T26E3.7|T26E3.7 [Source:RefSeq_peptide;Acc:NP_493203] ## {SimpF: T26E3.7 1 Expression_profile,WRM0629bB02 1 fosmid,WRM069aG07 1 fosmid}

block1246 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.537	no	no	0.39/0.39	23/23/1.00	0.0	0.0	1	0	1	0	21	15	3arm	1	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUUGAGU------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------GATTGAGTGGATTGTAGTTCAGT---------------------	23	1
celegans	tcctatcatcgataagtgtgcaatggattgtcaaagaagccagattggggaactctcggaggggaatgattcgatcGATTGAGTGGATTGTAGTTCAGTgtcaatgtcgtcaacgatggg
	************************************************************************************************************************
celegans	.((((((..(((((..((.(((.(((((((.(((....(((((((((((....((((....))))....)))))))...)).))...)))))))))).))))).))))).....))))))	0.520 -28.40

celegans

chromosome:I:13661855:13661974:1

intergenic ## {SimpF: WRM0613cC11 1 fosmid,WRM0617dF08 1 fosmid,W09C5.9 1 Expression_profile}

block1257 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.224	no	no	0.52/0.52	23/23/1.00	0.0	0.0	1	0	1	0	19	7	3arm	1	nd	0.13	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UUCAGAG----------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------GTTCAGAGGGGGGTAATCATGAG-------------------	23	1
celegans	gccactttaattccgtctcatttgatatccctgagacgtagacagccgctgatttttattttttaaaaagGTTCAGAGGGGGGTAATCATGAGaagaacgaaaaaaattggc
	****************************************************************************************************************
celegans	((((.(((..(((..(((((..(((((((((..............((.((((((((((.....))))))...)))).)))))))).)))))))).....)))..))).))))	0.460 -24.83

celegans

chromosome:I:14182540:14182651:1

intergenic

block1518 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.219	no	no	0.57/0.57	23/23/1.00	0.0	0.0	1	0	1	0	6	24	3arm	1	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------UGCUGUG---------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------------------------------GTGCTGTGAGTGTCGTCCATGCT------	23	1
celegans	ttttcatcaattggagcatccaacagtgagtgagccggcgccgagccattgagcattttatcgtcggattttgagctgctcgccGTGCTGTGAGTGTCGTCCATGCTgaaaat
	*****************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------	F56D12.6b F56D12.6 F56D12.6
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------	F56D12.6a F56D12.6 F56D12.6
celegans	((((((.((..(((((((..((.(((((.(((((.((((..(((.((..(((........)))..))...))).)))))))))..)))))))..)))..)))))).)))))).	0.820 -34.20

celegans

chromosome:II:1316836:1316948:-1

block2026 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.768	no	no	0.71/0.71	21/21/1.00	0.0	0.0	1	0	1	0	18	7	5arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------AAGAGGG--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------GAAGAGGGTGTCGACGGCCGG-------------------------------------------------------------	21	1
celegans	tgtggtaaacgaggcttcGAAGAGGGTGTCGACGGCCGGgatattggtgacaaagtattggaatttcatctcgaacatttttagcgcgtggtttttcacc
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	Y48C3A.14 Y48C3A.14 Y48C3A.14
celegans	.((((.....((((((.((..(((((((((((.((((((.((.(((....))).)).)))).......)))))).)))))))..))...)))))))))).	0.620 -20.31

celegans

chromosome:II:13397014:13397113:-1

Opposite_strand|Intronic_coding|Y48C3A.14|Y48C3A.14 ## Y48C3A.14|protein_coding|Y48C3A.14|Y48C3A.14 [Source:RefSeq_peptide;Acc:NP_496822] ## {SimpF: WRM0617bG09 -1 fosmid,CEOP2606 -1 Operon}

block2156 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.259	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	10	4	5arm	2	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	-----------UUGACCG----------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------GTTGACCGCCCAGTATAGCG----------------------------------------	20	1
celegans	gatgcaccatGTTGACCGCCCAGTATAGCGggttggggagccgcactggggtcaagccggaagaagtgtc
	**********************************************************************
celegans	(((((.((...(((((..((((((...((((.((...)).)))))))))))))))...)).....)))))	0.990 -21.90

celegans

chromosome:II:2164258:2164327:1

intergenic ## {SimpF: oe = 1.17 0 CpG,WRM0622bG08 1 fosmid}

block2204 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.175	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	10	12	5arm	1	nd	0.15	2	1	1	na	na

		reads	miRBase family seed
seed	-----------UAUGAAA------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------ATATGAAAGTGTCAGTGACT------------------------------------------------------	20	1
celegans	aggaaaatgtATATGAAAGTGTCAGTGACTtatcaaaatagcatatgcgttgttgcatgactcttggtgttgtatgcaaaagcc
	************************************************************************************
	----------------------------------------------------------------------------------------------	F39E9.6 F39E9.6 F39E9.6
celegans	.((....((((((((((((.(((((((((...........((....))...))))).)))).)))....)))))))))....))	0.600 -16.94

celegans

chromosome:II:3310553:3310636:1

Opposite_strand|Intronic_coding|F39E9.6|F39E9.6 ## F39E9.6|protein_coding|F39E9.6|F39E9.6 encodes a neprilysin. neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them. F39E9.6 has no clear orthologs in other organisms. [Source: WormBase] ## {SimpF: F39E9.6 1 Expression_profile,WRM0639dB12 1 fosmid,WRM0622bD02 1 fosmid,WRM0622bE10 1 fosmid}

block2211 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.120	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	10	13	3arm	1	nd	0.27	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------UAAAUUU------------------------	1	novel
		len	cloning frequencies
			CE1
	---------------------------------------------------------------GTAAATTTGAACAACGTGTCCG----------	22	1
celegans	gcggatttggcggatttgccggatttgccggaatttcctgatttgccataagatcactttttcGTAAATTTGAACAACGTGTCCGataatttgta
	***********************************************************************************************
celegans	(((((((...((((((((.((((((((.(((((.....((((((......))))))...)))))))))))))..)))...)))))..))))))).	0.660 -24.10

celegans

chromosome:II:3395480:3395574:1

intergenic ## {SimpF: WRM0636cD03 1 fosmid,WRM068bB05 1 fosmid,WRM0610dH04 1 fosmid,WRM069bC03 1 fosmid,WRM0631bH09 1 fosmid,WRM0610cF02 1 fosmid,WRM0622bA01 1 fosmid}

block2541 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.167	no	no	0.33/0.33	21/21/1.00	0.0	0.0	2	0	1	0	5	7	3arm	1	nd	0.29	3	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------UUUGUUC------------------	2	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------GTTTGTTCGCTTGAATACTAT-----	21	2
celegans	aaagggatgcctttgagcactgagctataacttgatagacctgattactcgacaaGTTTGTTCGCTTGAATACTATtcttt
	*********************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>........................................................	C07E3.4 C07E3.4 C07E3.4
celegans	.((((((((..((..(((...((((...((((((...((.........))..)))))).)))))))..))...))))))))	1.000 -17.40

celegans

chromosome:II:10362807:10362887:1

intergenic ## {SimpF: WRM0640dD10 1 fosmid,WRM067cH01 1 fosmid,WRM0617bG10 1 fosmid,C07E3.4 1 Expression_profile,WRM0620bE09 1 fosmid}

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other hairpins:

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miR-Intess™

block704 [novel]

block1216 [novel]

block1246 [novel]

block1257 [novel]

block1518 [novel]

block2026 [novel]

block2156 [novel]

block2204 [novel]

block2211 [novel]

block2541 [novel]