other hairpins
block2577 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.192 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 23 | 7 | 5arm | 1 | nd | 0.14 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------AUUCGCU------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------GATTCGCTCCGTTTCTGGTAC----------------------------------------------------------------------- | 21 | 1 | |
| celegans | agaattttgagcaatggaatctgGATTCGCTCCGTTTCTGGTACggtcgctctatataagcgttcctggcagattatcagacgttgacgaaatcttaatgttgcttccacttcta | ||
| ******************************************************************************************************************* | |||
| celegans | ((((....((((((((......(((((((.((((((((((.((.((.((((.......))))..)))).))))......))))..)))))).)))...))))))))....)))). | 0.970 -26.50 |
| celegans | chromosome:II:11295053:11295167:1 | intergenic ## {SimpF: WRM0634aH09 1 fosmid,WRM0624cC01 1 fosmid,WRM069aD07 1 fosmid,WRM0622aE08 1 fosmid,WRM0630aG08 1 fosmid,WRM0616bE09 1 fosmid,WRM065bG09 1 fosmid,WRM0617cH09 1 fosmid,WRM0626aH03 1 fosmid,WRM0637dD07 1 fosmid,WRM0626bE04 1 fosmid,WRM065bB04 1 fosmid,WRM0613bA02 1 fosmid,WRM069cF05 1 fosmid} |
block2864 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.372 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 22 | 0 | 5arm | 3 | nd | 0.19 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------AGAUUGA---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------GAGATTGATTGGCAGTCAATT--------------------------------------------------------- | 21 | 1 | |
| celegans | gggagattggtggcgatggtggGAGATTGATTGGCAGTCAATTaaagcaaatcgactctggccaaatcatactcaacgactccggcgtccgagctcactg | ||
| **************************************************************************************************** | |||
| ..............................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | C36A4.5 C36A4.5 C36A4.5 | ||
| celegans | (((((.((((((.((..(((..(((..((((((((((((.(((......))).))))...))))).)))..)))....))).)).)).)))).))).)). | 0.510 -27.50 |
| celegans | chromosome:III:3848183:3848282:-1 | Opposite_strand|Boundary_non-coding|C36A4.5|C36A4.5 ## C36A4.5|protein_coding|C36A4.5|C36A4.5 [Source:RefSeq_peptide;Acc:NP_497778] ## {SimpF: WRM0628cA10 -1 fosmid,WRM0611aB12 -1 fosmid,WRM0620aH08 -1 fosmid,WRM0610cD10 -1 fosmid,WRM0613aC06 -1 fosmid} |
block2914 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.150 | no | no | 0.48/0.48 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 6 | 5arm | 1 | nd | 0.30 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------GAUUCCA------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------TGATTCCATTGAAACGAGGACGG---------------------------------------------- | 23 | 1 | |
| celegans | tttgtgTGATTCCATTGAAACGAGGACGGaaaatcataaaaagatgactgatttcaattcgaatgaaacaaacaa | ||
| *************************************************************************** | |||
| ------------------------------------------------------------------------------------- | M88.7 M88.7 M88.7 | ||
| ................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | M88.3 M88.3 M88.3 | ||
| celegans | .((((.((.(((..(((((..((((.(((...(((.......)))..))).))))..)))))..))).)).)))) | 0.970 -11.50 |
| celegans | chromosome:III:4544910:4544984:-1 | Opposite_strand|Intronic_coding|M88.7|M88.7 ## M88.7|protein_coding|M88.7|M88.7 [Source:RefSeq_peptide;Acc:NP_497920] ## {SimpF: WRM0640cE01 -1 fosmid,WRM0625cB01 -1 fosmid,WRM0618aF05 -1 fosmid,WRM0627cC04 -1 fosmid,WRM0624dG04 -1 fosmid,WRM0622dB10 -1 fosmid,WRM0631cD12 -1 fosmid,WRM0626cG09 -1 fosmid,WRM061bH07 -1 fosmid,WRM0611dC02 -1 fosmid,M88.3 -1 Expression_profile} |
block3313 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.149 | no | no | 0.59/0.59 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 12 | 12 | 5arm | 1 | nd | 0.23 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------UCGGCGA--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------GTCGGCGAGTGTCTTCAGAAGG------------------------------------------------------------------------- | 22 | 1 | |
| celegans | tgatttcttatcGTCGGCGAGTGTCTTCAGAAGGccaatgtagtttttgaatagaatatatggccggactgatggtttttgagctttttccggcggcttttcatcaa | ||
| *********************************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------------------------- | Y75B8A.25 Y75B8A.25 Y75B8A.25 | ||
| celegans | ((((......(((((((((((..((.((((..((((.(((((.(((......))).)))))))))...)))).))..))))........)))))))......)))). | 0.750 -27.40 |
| celegans | chromosome:III:12276986:12277092:-1 | Opposite_strand|Intronic_coding|Y75B8A.25|Y75B8A.25 ## Y75B8A.25|protein_coding|Y75B8A.25|Y75B8A.25 [Source:RefSeq_peptide;Acc:NP_499597] |
block3478 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.113 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 12 | 9 | 3arm | 1 | nd | 0.20 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------GCUUUGU------------------------ | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------------------------------------TGCTTTGTGGCTTTGCTGGT------------ | 20 | 3 | |
| celegans | gctatcgagataataagcatttatggctacaatgtatacgcctctcaaaattacgttcacatTGCTTTGTGGCTTTGCTGGTaactcttttgcc | ||
| ********************************************************************************************** | |||
| celegans | ((....(((.((...((((.....((((((((.(((.(((.............)))......))).)))))))).))))..)).)))....)). | 0.990 -19.82 |
| celegans | chromosome:III:3249145:3249238:1 | intergenic |
block3753 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.440 | no | no | 0.38/0.38 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 1 | 3arm | 1 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------AUUUCAA------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------------GATTTCAAGATAGCTTCCATTTGG-------- | 24 | 1 | |
| celegans | ccactacaaaaaatgatgatgaattgaagatacttgagtaacattattGATTTCAAGATAGCTTCCATTTGGacaggtgt | ||
| ******************************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................. | ZC21.8 ZC21.8 ZC21.8 | ||
| celegans | .((((.....(((((..........((((.((((((((...((....))..)))))).)).))))))))).....)))). | 0.540 -12.00 |
| celegans | chromosome:III:8519789:8519868:1 | Opposite_strand|Boundary_non-coding|ZC21.8|ZC21.8 ## ZC21.8|protein_coding|ZC21.8|Uncharacterized protein ZC21.8. [Source:UniProtKB/Swiss-Prot;Acc:P34592] ## {SimpF: WRM0639dC05 1 fosmid,WRM0616cD05 1 fosmid,WRM0636aE11 1 fosmid,9ZC21.8 1 Expression_profile,WRM063cB03 1 fosmid} |
block3798 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.832 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 13 | 3arm | 1 | nd | 0.19 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------ACUGUGA--------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------CACTGTGAGCAAGAGAAGAGC-------- | 21 | 1 | |
| celegans | gtaagttgtttcctaattatttatttgttcagaaaaagagccgttattgaattatgtcgtcgtcgactgaaagtgaCACTGTGAGCAAGAGAAGAGCcatttata | ||
| ********************************************************************************************************* | |||
| celegans | ((((((.((((........(((.((((((((.....((....((((((...(((.((((....))))))).)))))).)).)))))))).))))))).)))))). | 0.520 -16.60 |
| celegans | chromosome:III:9509686:9509790:1 | intergenic ## {SimpF: WRM0611cG01 1 fosmid,WRM0616bE10 1 fosmid,WRM0618aH06 1 fosmid} |
block4095 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.372 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 22 | 0 | 5arm | 3 | nd | 0.19 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------AGAUUGA---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------GAGATTGATTGGCAGTCAATT--------------------------------------------------------- | 21 | 1 | |
| celegans | gggagattggtggcgatggtggGAGATTGATTGGCAGTCAATTaaagcaaatcgactctggccaaatcatactcaacgactccggcgtccgagctcactg | ||
| **************************************************************************************************** | |||
| .............................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | F42A6.3 F42A6.3 F42A6.3 | ||
| celegans | (((((.((((((.((..(((..(((..((((((((((((.(((......))).))))...))))).)))..)))....))).)).)).)))).))).)). | 0.510 -27.50 |
| celegans | chromosome:IV:3324919:3325018:-1 | intergenic ## {SimpF: WRM0626dG12 -1 fosmid} |
block4161 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.082 | no | no | 0.48/0.48 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 18 | 15 | 3arm | 2 | nd | 0.26 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------AUGAUGA--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------------------------TATGATGAGTTCGGGCGATGATC------------------ | 23 | 1 | |
| celegans | tgcggggtttacactggtcatctactgcggtggaaaactttagtcttcagtatgggtcaatctctgatctgcaactgaaTATGATGAGTTCGGGCGATGATCttttgtgattaaatcgca | ||
| ************************************************************************************************************************ | |||
| celegans | .((((...(((((..(((((((..(((........(((((..((.((((((..((((((.....))))))...)))))).))...))))))))..)))))))...))))).....)))). | 0.710 -33.90 |
| celegans | chromosome:IV:4880772:4880891:-1 | intergenic ## {SimpF: WRM0617aF03 -1 fosmid,WRM0641bG05 -1 fosmid,WRM0631dA02 -1 fosmid,WRM061cE11 -1 fosmid,WRM0629bB01 -1 fosmid} |
block4259 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.097 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 5 | 23 | 3arm | 1 | nd | 0.20 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------AAUGAUA----------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------------------------TAATGATATATTTTGTGGCG----- | 20 | 2 | |
| celegans | cgaatctgtctgtcaaaattaatcatgaatttttttactgtttcaaaatatttattaattgtgaattcctcaactatgtataaTAATGATATATTTTGTGGCGattcg | ||
| ************************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | B0273.4a B0273.4 unc-5 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | B0273.4b B0273.4 unc-5 | ||
| celegans | ((((((.(((...((((((..(((((..(((....(((.(((.......((((((.....)))))).....)))...))).))).)))))..)))))).))))))))) | 0.890 -18.20 |
| celegans | chromosome:IV:5507074:5507181:-1 | Same_strand|Intronic_coding|B0273.4a|B0273.4 ## B0273.4|protein_coding|unc-5|unc-5 encodes a netrin receptor. unc-5 activity is required cell autonomously for dorsalward cell and pioneer motor axon migrations along the body wall that are essential for normal locomotion and gonad development. unc-5 mRNAs are expressed throughout the entire life cycle, with increasing levels seen as animals progess to adulthood. [Source: WormBase] ## {SimpF: WRM062bG09 -1 fosmid,WRM0634cF12 -1 fosmid,WRM069cB02 -1 fosmid,WRM0610dA07 -1 fosmid,WRM0629dG12 -1 fosmid} |
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