miR-Intess: classification

other hairpins

block6126 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.035	no	no	0.25/0.25	20/20/1.00	0.0	0.0	1	0	1	0	19	4	5arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------UGAAGUA-----------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------TTGAAGTAGGATTTTGAAAT-----------------------------------------------------	20	1
celegans	taaatttagcattttttgtTTGAAGTAGGATTTTGAAATaaattaaatattggctttcatttcttgaatcagttttagaaaaatgtaaattt
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	Y105C5B.7 Y105C5B.7 Y105C5B.7
celegans	.((((((.(((((((((..((((..(((((...(((((..(((.....)))...)))))..)))))..)))).....)))))))))))))))	1.000 -17.20

celegans

chromosome:IV:15918175:15918266:1

Opposite_strand|Intronic_coding|Y105C5B.7|Y105C5B.7 ## Y105C5B.7|protein_coding|Y105C5B.7|Y105C5B.7 [Source:RefSeq_peptide;Acc:NP_502896] ## {SimpF: WRM0633cH08 1 fosmid}

block6172 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.331	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	9	2	3arm	1	nd	0.38	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------AUUGAGU----------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------GATTGAGTTGAGGAGTCTTTG---------	21	1
celegans	gcaacaattttgaaaatctccaaagctttttgatacaccttGATTGAGTTGAGGAGTCTTTGaatcaggcg
	***********************************************************************
celegans	((......((..((...((((..(((((.((((......))))..)))))..))))..))..))....)).	0.890 -12.90

celegans

chromosome:IV:16190914:16190984:1

intergenic ## {SimpF: WRM0637dB08 1 fosmid,WRM0626dE07 1 fosmid,WRM0621bE04 1 fosmid}

block6949 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.728	no	no	0.43/0.43	21/21/1.00	0.0	0.0	2	0	1	0	25	0	3arm	1	nd	0.38	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------UAUAUAG--------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------GTATATAGAGTGTGACCACGT-------------------------	21	2
celegans	attgtaatattggatagccggctgagtggatgcttcttgcttaaaggtttGTATATAGAGTGTGACCACGTaacatgtcattatttaaaaagacaa
	************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-----------------------------------------------------------<<<	ZK228.11 ZK228.11 ZK228.11
celegans	.((((....((((((((..(((((.((((.((((((((((..........)))...)))).))).))))....)).))).))))))))....))))	0.920 -15.70

celegans

chromosome:V:18455798:18455893:-1

Opposite_strand|Intronic_non-coding|ZK228.11|ZK228.11 ## ZK228.11|pseudogene|ZK228.11| ## {SimpF: WRM0621cH01 -1 fosmid,WRM0610dC09 -1 fosmid}

block7141 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.251	no	no	0.30/0.30	23/23/1.00	0.0	0.0	1	0	1	0	28	2	3arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------UUAGAGA-------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------ATTAGAGATTAATCAGCACTTTC----------------------------	23	1
celegans	tggtgttgaaatggtacacgatagttggggtgaagtttgattttttaaaaatattggcaatATTAGAGATTAATCAGCACTTTCaaattccatctcgtcggattcttcacca
	****************************************************************************************************************
	..........................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	K09H11.11 K09H11.11 K09H11.11
celegans	.((((..(((........((((((.(((((((((((((((((..((...(((((.....)))))...))..)))))).)))))...)))))).)).))))..)))..)))).	0.970 -23.30

celegans

chromosome:V:5754585:5754696:1

Opposite_strand|Boundary_non-coding|K09H11.11|K09H11.11 ## K09H11.11|protein_coding|K09H11.11|K09H11.11 [Source:RefSeq_peptide;Acc:NP_001033495] ## {SimpF: WRM0634bH03 1 fosmid,WRM0641cE05 1 fosmid,WRM066cD09 1 fosmid,WRM0640bE01 1 fosmid}

block7466 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.589	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	17	2	3arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------UCUGACU------------------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------TTCTGACTGTTTCAAGATATC-----------------	21	1
celegans	gaactggttaattagatttagtggaatagcgagtagcaagctTTCTGACTGTTTCAAGATATCaatcttctcctttgtta
	********************************************************************************
celegans	.(((.((......(((((((.((((((((..((.((....))..))..))))))))...))..)))))...))...))).	0.880 -12.70

celegans

chromosome:V:16968806:16968885:1

intergenic

block7521 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.182	no	no	0.62/0.62	21/21/1.00	0.0	0.0	1	0	1	0	5	11	3arm	1	nd	0.43	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------AGGUGGG------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------------CAGGTGGGAGTGGTGGTAGTG-----	21	1
celegans	ggtgacatcaaaaaaccaagattttcaaaatttcaaaatttctaatgtgtagaagtggctCAGGTGGGAGTGGTGGTAGTGgagcc
	**************************************************************************************
celegans	(((..(((......((((..(((..((..........(((((((.....)))))))........))..)))..)))).)))..)))	0.990 -18.47

celegans

chromosome:V:18514756:18514841:1

intergenic ## {SimpF: WRM0621cH01 1 fosmid}

block8182 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.711	no	no	0.43/0.43	21/21/1.00	0.0	0.0	2	0	1	0	20	8	5arm	1	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------UUUUGUC----------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------GTTTTGTCCAGCTTCAACGTT---------------------------------------------------------------	21	2
celegans	tcaatgtcttggccattccaGTTTTGTCCAGCTTCAACGTTccaaactgttgcacattctagagtttgaagtatcgacttgatgggaatctggaaaaatatcga
	********************************************************************************************************
celegans	((.((((.((..(((((((.(((..(((..(((((((...((.....((.....)).....))..)))))))...)))..))).))))..)))..)))))).))	0.830 -18.50

celegans

chromosome:X:1958855:1958958:1

intergenic ## {SimpF: WRM067dE01 1 fosmid,WRM0623dH03 1 fosmid,WRM0637cF04 1 fosmid,WRM0610aD12 1 fosmid,WRM0612dC06 1 fosmid,WRM0626aA05 1 fosmid}

block1576 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.603	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	19	3	5arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------CAGAGUC----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------ACAGAGTCAACACAGGGTATT---------------------------------------------------------	21	1
celegans	gtgatggaaaccaccgaaaACAGAGTCAACACAGGGTATTtcgttagcgtggagcaagtactgactctggaatttagacggaacagttcttgaaacg
	*************************************************************************************************
celegans	((...((((....(((....((((((((..((...((.((.((....)).)).))..))..)))))))).........))).....))))....)).	0.610 -19.02

celegans

chromosome:II:3303360:3303456:-1

intergenic ## {SimpF: WRM0622bD02 -1 fosmid,WRM0637bB09 -1 fosmid,WRM0639dB12 -1 fosmid,WRM0628aD03 -1 fosmid}

novel_nonpairedHIGH_bulgeHIGH (27 loci)

block75 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.066	no	no	0.38/0.38	24/24/1.00	0.0	0.0	1	0	1	0	9	11	5arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	----------UUUUUGA-----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------GTTTTTGATTTGCCACCAAACTTG-------------------------------------------------------	24	1
celegans	gaattcctaGTTTTTGATTTGCCACCAAACTTGtttgaaatcgaaataaatcgatttttggagaagaaggaggattattcgaaagttc
	****************************************************************************************
celegans	..........(((((((....((.((...(((.((..(((((((......))))).))..)).)))..)).)).....)))))))...	0.970 -18.70

celegans

chromosome:I:1812852:1812939:-1

intergenic ## {SimpF: WRM0635cF03 -1 fosmid}

block463 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.514	no	no	0.29/0.29	24/24/1.00	0.0	0.0	1	0	1	0	9	0	5arm	1	nd	0.54	4	1	1	na	na

		reads	miRBase family seed
seed	----------AUAAGAA------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------GATAAGAAAGTGAAAAGTATCTTG--------------------------------	24	1
celegans	tcgacatttGATAAGAAAGTGAAAAGTATCTTGaatcgagcttcttgacaatcgcaatagtcggt
	*****************************************************************
	<<<<<<<<<<<<...............................................................	Y106G6G.3 Y106G6G.3 dlc-6
celegans	(((((..(((....((...((..(((...((((...))))...)))..)).)).)))..))))).	0.770 -9.80