miR-Intess: classification

other hairpins

block4291 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.197	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	15	6	3arm	1	nd	0.24	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AGAUCUU----------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------------------------------------------------TAGATCTTGAAGAATATCCTT---------------	21	1
celegans	actgtgtcaccgtttcaacatgttcttaaagaaactgaatttatcaacttgattatTAGATCTTGAAGAATATCCTTtgttaacttatagtg
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	B0350.2g.2 B0350.2 unc-44
	------------------------------------------------------------------------------------------------------	B0350.2f.2 B0350.2 unc-44
	------------------------------------------------------------------------------------------------------	B0350.2e.2 B0350.2 unc-44
	------------------------------------------------------------------------------------------------------	B0350.2c.2 B0350.2 unc-44
	------------------------------------------------------------------------------------------------------	B0350.2a.2 B0350.2 unc-44
celegans	((((((.....(((.(((.((((((((.((((..((((....(((.....)))..)))).)))).))))))))...)))..))).)))))).	0.980 -14.60

celegans

chromosome:IV:5968274:5968365:-1

Opposite_strand|Boundary_non-coding|B0350.2c.1|B0350.2 ## Opposite_strand|Intronic_non-coding|B0350.2f.2|B0350.2 ## B0350.2|protein_coding|unc-44|The unc-44 gene encodes an ankyrin-like protein required for proper sex myoblast and axonal guidance during development. [Source: WormBase] ## {SimpF: WRM0617aD01 -1 fosmid,WRM069dG09 -1 fosmid,WRM0615cF12 -1 fosmid,WRM0641bE08 -1 fosmid,WRM0632bG01 -1 fosmid,WRM0631dH08 -1 fosmid,WRM065aA10 -1 fosmid,WRM0612dE02 -1 fosmid}

block4360 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.459	no	no	0.52/0.52	21/21/1.00	0.0	0.0	2	0	1	0	20	10	5arm	1	nd	0.29	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------UAUCGGG--------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------------GTATCGGGAGTTGCCATCGTT-------------------------------------------------------------------------	21	2
celegans	ccgccattttcgcagccgaaGTATCGGGAGTTGCCATCGTTaaaaagattcaaactgaatttatattccgatcaatcttgataaatgtcattggacgcgtggaatgtcatacgg
	******************************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................................................................................	C34D4.2 C34D4.2 C34D4.2
celegans	(((.(((((((((..((((..((((((((.(((..((((......((((((.....))))))......))))))))))))))).......))))..))).)))))).....)))	0.870 -24.60

celegans

chromosome:IV:7154630:7154743:-1

Opposite_strand|Boundary_non-coding|C34D4.2|C34D4.2 ## C34D4.2|protein_coding|C34D4.2|C34D4.2 [Source:RefSeq_peptide;Acc:NP_501125] ## {SimpF: WRM0631bH03 -1 fosmid,WRM067aF05 -1 fosmid,WRM0629dH06 -1 fosmid,WRM068aB11 -1 fosmid,WRM0622aC05 -1 fosmid,WRM067aG08 -1 fosmid,WRM0614bG05 -1 fosmid,WRM0635cG08 -1 fosmid,WRM062dB03 -1 fosmid,WRM0638cG05 -1 fosmid,WRM0614cF10 -1 fosmid,WRM0618cA02 -1 fosmid}

block5009 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.633	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	11	1	3arm	1	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UUGUUAU-----------------------	1	novel
		len	cloning frequencies
			CE1
	------------------------------------------------------TTTGTTATTGTCGGCAGGAG-----------	20	1
celegans	aaaattcactgtttcagcgcccccgaaagtaaaacaagcattaatttatagcagTTTGTTATTGTCGGCAGGAGattcttgtttt
	*************************************************************************************
celegans	(((((.....(((((...(((..(((......(((((((..............))))))).)))..)))..)))))....)))))	0.810 -12.04

celegans

chromosome:IV:15933948:15934032:-1

intergenic ## {SimpF: WRM0611aH08 -1 fosmid,WRM0633cH08 -1 fosmid}

block5049 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.428	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	12	5	3arm	1	nd	0.15	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------UUUUUAU------------------------	1	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------TTTTTTATGGGTGGTCATTG------------	20	1
celegans	aaaaatatccgttgcacatattccataaagtaattttttgaatttggtaacagTTTTTTATGGGTGGTCATTGgtatgattttta
	*************************************************************************************
celegans	((((((..(((.((.((....(((((((((.((((.((..........)).)))))))))))))..)))).)))....)))))).	0.600 -12.60

celegans

chromosome:IV:16076375:16076459:-1

intergenic ## {SimpF: WRM0627aG02 -1 fosmid}

block5107 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.399	no	no	0.24/0.24	21/21/1.00	0.0	0.0	2	0	1	0	15	9	5arm	1	nd	0.24	3	2	1	na	na

		reads	miRBase family seed
seed	----------------CAGCUGA--------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	---------------TCAGCTGATTTTTAAAATTTG-------------------------------------------------------------	21	2
celegans	ggaatttttgtatatTCAGCTGATTTTTAAAATTTGaaaattttgttaacaatttctttttaaaaactaaagccaaaataaatgggtaaaatgttcc
	*************************************************************************************************
celegans	(((((.(((...(((((((((..(((((((((...((((...(((....))))))).)))))))))....))).........))))))))).)))))	0.910 -12.50

celegans

chromosome:IV:16479421:16479517:-1

intergenic ## {SimpF: WRM0621bE04 -1 fosmid}

block5118 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.518	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	16	4	5arm	1	nd	0.10	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------UCAAGAG----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------TTCAAGAGTACGATCAGTTTT---------------------------------------------------------------------------	21	1
celegans	atagtaaaagtaacagTTCAAGAGTACGATCAGTTTTtttcaatttcatgttttagaaaaaataccaacgactgtttcactttgttttcttttctgaactcttttttttctg
	****************************************************************************************************************
celegans	.(((.(((((.((.((((((((((.((((.(((((((((((..............))))))........))))).......)))).))))....)))))).)).))))))))	0.670 -13.74

celegans

chromosome:IV:16600096:16600207:-1

intergenic ## {SimpF: WRM0614bA03 -1 fosmid,WRM069cB05 -1 fosmid,WRM0621bE04 -1 fosmid}

block5550 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.731	no	no	0.40/0.40	20/20/1.00	0.0	0.0	3	0	1	0	12	10	5arm	1	nd	0.25	2	3	1	na	na

		reads	miRBase family seed
seed	-------------GAAUAUG----------------------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	------------TGAATATGAATGACGAACGG----------------------------------------------------------	20	3
celegans	ctgaaagattaaTGAATATGAATGACGAACGGatgtataatgaatgacgttaacaaactttttataacatgccgtattttctctattagt
	******************************************************************************************
celegans	((((.(((.....(((((((.(((..(((.((.(((.(((((.....))))))))..)).)))....)))..)))))))..))).)))).	0.700 -10.20

celegans

chromosome:IV:6994109:6994198:1

intergenic ## {SimpF: WRM0632cH08 1 fosmid,WRM061aE08 1 fosmid,WRM0612cA02 1 fosmid}

block5761 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.545	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	6	6	5arm	6	nd	0.27	2	1	1	na	na

		reads	miRBase family seed
seed	-------UUUGCUU--------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	------GTTTGCTTGGTACGAGCCATTG------------------------------------------------	22	1
celegans	cgggcgGTTTGCTTGGTACGAGCCATTGcgtttaggttgataatccgtggggactgtaaaaaagagaaaccaacga
	****************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.......................................................	F54E12.1 F54E12.1 his-55
celegans	((...(((((.(((..((((..((.(((((.(((......)))..)))))))..))))...)))..)))))..)).	0.820 -15.90

celegans

chromosome:IV:11338209:11338284:1

Opposite_strand|Boundary_non-coding|F54E12.1|F54E12.1 ## F54E12.1|protein_coding|his-55|his-55 encodes an H3 histone. by homology, HIS-55 is predicted to function as a nucleosome component required for packaging of DNA into chromatin. his-55 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. [Source: WormBase] ## {SimpF: WRM0628dB08 1 fosmid,WRM066bE05 1 fosmid,oe = 1.05 0 CpG,WRM0613dE12 1 fosmid,WRM0626dC01 1 fosmid,F54E12.1 1 Expression_profile,WRM068dF12 1 fosmid,WRM0610aC05 1 fosmid}

block5902 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.040	no	no	0.46/0.50	18/24/0.75	0.2	1.5	4	0	1	0	16	12	5arm	1	nd	0.22	3	4	1	na	na

		reads	miRBase family seed
seed	-----------------UCGUUUG------------------------------------------------------------------------------------------	3	novel
seed	------------------CGUUUGU-----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	----------------TTCGTTTGTGGCACTAGGATCTTG--------------------------------------------------------------------------	24	2
	-----------------TCGTTTGTGGCACTAGGATCTTG--------------------------------------------------------------------------	23	1
	----------------TTCGTTTGTGGCACTAGG--------------------------------------------------------------------------------	18	1
celegans	catgaaagtaacaaaaTTCGTTTGTGGCACTAGGATCTTGaatttaagagcatcattgtaacttgaaatttaaacatttcgaacctagttcttgacgtggaattaaactttcat
	******************************************************************************************************************
celegans	.((((((((.........((((...((.((((((.(((((((((((((.(((....)))..)))))).))))).......)).)))))).)).)))).........))))))))	0.540 -24.28

celegans

chromosome:IV:14202331:14202444:1

intergenic ## {SimpF: WRM0626cF11 1 fosmid,WRM0637bG07 1 fosmid,WRM0618cE02 1 fosmid,WRM0633cH03 1 fosmid,WRM065dE07 1 fosmid,WRM0636cD04 1 fosmid,WRM063bF11 1 fosmid}

block5989 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.379	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	9	3	5arm	1	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	----------GUGUGUC----------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	---------TGTGTGTCAAGTAAAAGGAATG--------------------------------------------	22	1
celegans	gaatttttcTGTGTGTCAAGTAAAAGGAATGcggttttttgttgctttttcttctgtacattcccagtgtattcc
	***************************************************************************
celegans	((((....(((.((((((((.((((((...((((....))))..))))))))..)).))))...)))...)))).	0.990 -12.10