other hairpins
block6033 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.211 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 10 | 7 | 5arm | 1 | nd | 0.24 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------CUUUUUU---------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------TCTTTTTTGGGTGAGCATGTT--------------------------------------------------- | 21 | 2 | |
| celegans | tcaattacacTCTTTTTTGGGTGAGCATGTTtttacatacataatttatacgcatagtacagtcagaacagacagaaattga | ||
| ********************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y40H7A.5 Y40H7A.5 srd-23 | ||
| celegans | ((((((....(((.((((((.((.((((((...((.((.....)).))...)))).)).)).)))))).)))....)))))) | 0.600 -13.20 |
| celegans | chromosome:IV:15181453:15181534:1 | Same_strand|Intronic_coding|Y40H7A.5|Y40H7A.5 ## Y40H7A.5|protein_coding|srd-23|Serpentine Receptor, class D (delta) family member (srd-23) [Source:RefSeq_peptide;Acc:NP_502832] ## {SimpF: WRM0632aH08 1 fosmid,Y40H7A.5 1 Expression_profile} |
block6089 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.114 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 21 | 4 | 5arm | 1 | nd | 0.24 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------UUGCGGC--------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------TTTGCGGCGCAGTGTCTTATT-------------------------------------------------------- | 21 | 1 | |
| celegans | ggtctagtatgtcacactcagTTTGCGGCGCAGTGTCTTATTtgaattgttttttttttaaataaaatgcactgttctataacaacatattttaatca | ||
| ************************************************************************************************** | |||
| celegans | (((..(((((((........(((...((.(((((((.(((((((((..........)))))))))...))))))).))..))).)))))))...))). | 0.530 -17.60 |
| celegans | chromosome:IV:15695167:15695264:1 | intergenic |
block6146 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.037 | no | no | 0.33/0.33 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 1 | 5arm | 1 | nd | 0.10 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------AGAAACA------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------TAGAAACAGTCGGAAAAAAGT----------------------------------------------------------------------- | 21 | 1 | |
| celegans | tttcgagaactaatatgttaagcaaTAGAAACAGTCGGAAAAAAGTttccaaaattttttccttgacaaactccgattttctattttttaacgaaatattttactacttttcagaaa | ||
| ********************************************************************************************************************* | |||
| ------------------------------------------------------------------------------------------------------------------------------- | Y105C5B.21a Y105C5B.21 jac-1 | ||
| ------------------------------------------------------------------------------------------------------------------------------- | Y105C5B.21b.1 Y105C5B.21 jac-1 | ||
| celegans | .((((((((..(((((((((((.((((((((..((((((((((((((.....))))))))...........)))))))))))))).))))))...))))).......))))).))). | 0.680 -19.80 |
| celegans | chromosome:IV:16025543:16025659:1 | Opposite_strand|Intronic_non-coding|Y105C5B.21b.1|Y105C5B.21 ## Opposite_strand|Boundary_non-coding|Y105C5B.21b.2|Y105C5B.21 ## Opposite_strand|Intronic_coding|Y105C5B.21a|Y105C5B.21 ## Y105C5B.21|protein_coding|jac-1|jac-1 encodes the C. elegans p120 catenin orthologue. by homology, JAC-1 is predicted to be a component of the cadherin-catenin complex (CCC). although loss of jac-1 activity via RNAi does not result in obvious defects, jac-1(RNAi) does enhance embryonic morphogenesis defects produced by weak loss-of-function mutations in hmp-1/alpha-catenin, suggesting that JAC-1 positively regulates cadherin-catenin function in the embryo. JAC-1 likely regulates this function by promoting association between the actin cytoskeleton and the cadherin-catenin complex. a JAC-1 reporter fusion localizes to embryonic adherens junctions in a manner that is dependent upon the presence of HMR-1/cadherin, with which it specifically interacts in the yeast two-hybrid system. [Source: WormBase] ## {SimpF: WRM0613dE04 1 fosmid} |
block6256 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.181 | no | no | 0.45/0.45 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | 8 | 3arm | 2 | nd | 0.18 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------UUGCAGU--------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------ATTGCAGTGTGCTGACCATTGA------------- | 22 | 1 | |
| celegans | gagcaggagcagatgtttcatatgtgcatcgtgatgaccaggagcatccagcagcagcttcatcATTGCAGTGTGCTGACCATTGAgctcagcagcttc | ||
| *************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y116A8C.3 Y116A8C.3 Y116A8C.3 | ||
| celegans | ((((..((((.((((..(((...((((((.(((((((...(((((...........))))).))))))).))))))))).))))..))))....)))). | 0.420 -28.90 |
| celegans | chromosome:IV:16917825:16917923:1 | Same_strand|Intronic_coding|Y116A8C.3|Y116A8C.3 ## Y116A8C.3|protein_coding|Y116A8C.3|Y116A8C.3 [Source:RefSeq_peptide;Acc:NP_503003] ## {SimpF: WRM0621dF01 1 fosmid} |
block6297 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.629 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 23 | 3arm | 1 | nd | 0.19 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------------UUAUGGG---------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------------------------------TTTATGGGATTAGCACAAGCT--------- | 21 | 1 | |
| celegans | tgttcaaagaatcgcttttattactctatatgagcgtcatttattgggaagaagacaaaatcgtctagggcccaccaaggttacaTTTATGGGATTAGCACAAGCTttattggat | ||
| ******************************************************************************************************************* | |||
| celegans | .((((((.(((..((((...(((.(((.((((((.((.((((..((((....((((......))))....))))...)))).)).))))))))).)))...))))))).)))))) | 0.480 -21.30 |
| celegans | chromosome:MtDNA:1807:1921:1 | intergenic |
block6337 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.464 | no | no | 0.29/0.29 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 22 | 4 | 5arm | 1 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------UUUUUUG-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------CTTTTTTGGTTTATCGGTTTTTAG---------------------------------------------------------- | 24 | 1 | |
| celegans | taggtgattattttatatttgtCTTTTTTGGTTTATCGGTTTTTAGaggttattattttttaagatttagaatatttagaagttatatatctttattattactt | ||
| ******************************************************************************************************** | |||
| celegans | .(((((((.....(((((....(((((...((((...((((((.((((((....)))))).))))))..))))....)))))..)))))........))))))) | 0.980 -11.22 |
| celegans | chromosome:MtDNA:12100:12203:1 | intergenic ## {Repeats: dust 12174 12198 0 class=dust} |
block6711 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.609 | no | no | 0.23/0.23 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 18 | 2 | 5arm | 1 | nd | 0.23 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------AUACUGU-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------GATACTGTCAATTCAAAATTTT------------------------------------------------------ | 22 | 1 | |
| celegans | ctcttttattttctcagtGATACTGTCAATTCAAAATTTTgttggaataggatcccattgacaagggcggaatcaaatcgggaactgtcttgag | ||
| ********************************************************************************************** | |||
| ..............................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | F55A11.11 F55A11.11 F55A11.11 | ||
| >>>>>>>>>>>>>>>......................................................................................... | F55A11.7 F55A11.7 F55A11.7 | ||
| celegans | (((.......(((((..((((.(((((...((((.(((((((....)))))))....))))....))))).))))....))))).......))) | 0.750 -16.94 |
| celegans | chromosome:V:11784472:11784565:-1 | Opposite_strand|Boundary_non-coding|F55A11.11|F55A11.11 ## F55A11.11|protein_coding|F55A11.11|F55A11.11 encodes a member of the histidine phosphatase superfamily orthologous to Bombyx mori ecdysteroid phosphate phosphatase (EPP), human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736). F55A11.11 lacks the consensus sequence for phosphatase activity, and thus is predicted to be catalytically inactive. F55A11.11 is also paralogous to C. elegans C52E4.7, F09C12.8, F53B6.7, and T07F12.1. loss of F55A11.11 activity via large-scale RNAi results in no obvious defects. [Source: WormBase] ## {SimpF: F55A11.6 -1 Expression_profile,WRM0631cD03 -1 fosmid,WRM064dC03 -1 fosmid,WRM0610dE04 -1 fosmid,WRM0615cG08 -1 fosmid,WRM0611dE09 -1 fosmid} |
block6728 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.42/0.42 | 24/24/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 26 | 3 | 3arm | 2 | nd | 0.25 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------UUCUAUU------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------GTTCTATTTGGCATAGGTCTTCTG-------------------------- | 24 | 2 | |
| celegans | agctaataatacttcgttaatttcattttcggatttgcgtcaattagagtcaaatctagaaGTTCTATTTGGCATAGGTCTTCTGataggtcgacgacttcttgtattggt | ||
| *************************************************************************************************************** | |||
| .....................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | K01D12.15 K01D12.15 K01D12.15 | ||
| celegans | .(((((((.....((((..((((.(((...(((((((.(((((.((((.((.......))...)))).))))).)))))))...)))))))..)))).......))))))) | 0.930 -25.40 |
| celegans | chromosome:V:12386639:12386749:-1 | Opposite_strand|Boundary_non-coding|K01D12.15|K01D12.15 ## K01D12.15|protein_coding|K01D12.15|Putative uncharacterized protein. [Source:UniProtKB/TrEMBL;Acc:Q27223] ## {SimpF: K01D12.15 -1 Expression_profile,WRM068aD04 -1 fosmid,WRM069cA03 -1 fosmid,WRM0611cF10 -1 fosmid,WRM0623bC10 -1 fosmid,WRM069bE06 -1 fosmid,WRM0623bE06 -1 fosmid} |
block6803 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 7 | 10 | 5arm | 1 | nd | 0.19 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------AUUAGAC------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------GATTAGACAGCAAGGTTTGGT----------------------------------------------------------------------------------- | 21 | 1 | |
| celegans | aatgagaGATTAGACAGCAAGGTTTGGTgggattggaacaatttcatcttcatcttcttcttccggattccaccaacgaacatccaacttgcgtccttcgaaatcttcatt | ||
| *************************************************************************************************************** | |||
| ..............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | C47E8.11 C47E8.11 C47E8.11 | ||
| celegans | (((((.(((((.(((.(((((..(((((((((((((((......................))))).))))))))))...........))))))))......)))))))))) | 0.650 -26.67 |
| celegans | chromosome:V:14688797:14688907:-1 | Opposite_strand|Boundary_non-coding|C47E8.11|C47E8.11 ## C47E8.11|protein_coding|C47E8.11|C47E8.11 [Source:RefSeq_peptide;Acc:NP_001023716] ## {SimpF: WRM0640bF07 -1 fosmid,WRM0632dA11 -1 fosmid,WRM0621cA02 -1 fosmid} |
block7014 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.074 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 30 | 8 | 3arm | 1 | nd | 0.15 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------GAAGAGU------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------------GGAAGAGTTCTGAATTTTTT------------------------------ | 20 | 1 | |
| celegans | aggtgtaaaatttcagaaaatttgaaaatatttgtagaattcttaacaaaattttttctaatttttgGGAAGAGTTCTGAATTTTTTaaaggaatttttaatggtggagtagcgtct | ||
| ********************************************************************************************************************* | |||
| celegans | ((..((...((((((((((((((.((((.((((..(((((((((..(((((.((.....)).)))))..))))))))))))).))))....)))))))).....)))))).))..)) | 0.870 -22.10 |
| celegans | chromosome:V:20443233:20443349:-1 | intergenic ## {SimpF: WRM067bB10 -1 fosmid} |
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