other hairpins
block7028 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.157 | no | no | 0.25/0.25 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | 11 | 5arm | 1 | nd | 0.15 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------AUAGAAA------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------GATAGAAAGGTGAAAATTTT------------------------------------------------------------------- | 20 | 1 | |
| celegans | gtaatcgtgatcagacggtGATAGAAAGGTGAAAATTTTcagaaaaatggttctgctaattgagtttttttcacctgttcttcttatgattttgccattccgatta | ||
| ********************************************************************************************************** | |||
| celegans | .((((((..((((((..((((.(((((((((((((..(((((.....(((.....))).)))))...))))))))).))))..))))...))))..))..)))))) | 0.830 -22.30 |
| celegans | chromosome:V:215812:215917:1 | intergenic |
block7051 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.282 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | 19 | 3arm | 1 | nd | 0.25 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------GUGGUGG---------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------------------GGTGGTGGTGTTGATGAATG---------------- | 20 | 1 | |
| celegans | gttggaattgttgaaattcgcaacgtcatcattgaagttaagcgatgggtaaagtaaagcacaatagtaataataatGGTGGTGGTGTTGATGAATGatattacataaggagc | ||
| ***************************************************************************************************************** | |||
| celegans | ........(((....(((((((((..((((((((..((((.((..((.((........)).))...))..))))..))))))))..)))).)))))......)))........ | 0.430 -18.90 |
| celegans | chromosome:V:1372886:1372998:1 | intergenic |
block7058 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.851 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | 9 | 5arm | 1 | nd | 0.20 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------UUGCUGG--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------GTTGCTGGTGAAGCCATTGG--------------------------------------------------------------------------- | 20 | 1 | |
| celegans | ccgatcggtcaagaatttcGTTGCTGGTGAAGCCATTGGtaccctgtagaaatgaaaaatgctgatgttattcgaatttttatgccggcacacgttttatattaacacggagga | ||
| ****************************************************************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................................................................... | F36H9.3 F36H9.3 dhs-13 | ||
| celegans | ((..(((((.((......(((((((((((((..(((..(((.....((....)).....)))..)))...)))..........))))))).))).......)).)).))).)). | 0.700 -23.62 |
| celegans | chromosome:V:1771693:1771806:1 | Opposite_strand|Boundary_non-coding|F36H9.3|F36H9.3 ## F36H9.3|protein_coding|dhs-13|dhs-13 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase] |
block7401 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.073 | no | no | 0.46/0.46 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 32 | 0 | 5arm | 3 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------UUGUUGG--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------GTTGTTGGGAGAGTTATTGGGATC----------------------------------------------------------- | 24 | 1 | |
| celegans | gacggcagtgtagatggcattcatcttgaggtGTTGTTGGGAGAGTTATTGGGATCgatttgatcgtgatttgaatgacaatttcctccttatttataccaactatttgtcatca | ||
| ******************************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | W06A7.4 W06A7.4 W06A7.4 | ||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.............................................................................. | W06A7.5 W06A7.5 nspa-8 | ||
| celegans | ((.(((((.((((.(((.((.......((((.(((((((...(((((((...((((.....)))))))))))...)))))))..)))).......)).))).))))))))).)). | 0.430 -29.54 |
| celegans | chromosome:V:14827007:14827121:1 | Opposite_strand|Boundary_non-coding|W06A7.5|W06A7.5 ## Same_strand|Intronic_coding|W06A7.4|W06A7.4 ## W06A7.5|protein_coding|nspa-8|Nematode Specific Peptide family/group A family member (nspa-8) [Source:RefSeq_peptide;Acc:NP_506654] ## W06A7.4|protein_coding|W06A7.4|W06A7.4 [Source:RefSeq_peptide;Acc:NP_506655] ## {SimpF: WRM0623cA05 1 fosmid,W06A7.5 1 Expression_profile,WRM0620cD10 1 fosmid,WRM0617cC12 1 fosmid} |
block7405 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.073 | no | no | 0.46/0.46 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 32 | 0 | 5arm | 3 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------UUGUUGG--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------GTTGTTGGGAGAGTTATTGGGATC----------------------------------------------------------- | 24 | 1 | |
| celegans | gacggcagtgtagatggcattcatcttgaggtGTTGTTGGGAGAGTTATTGGGATCgatttgatcgtgatttgaatgacaatttcctccttatttataccaactatttgtcatca | ||
| ******************************************************************************************************************* | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................................................................................ | ZC412.7 ZC412.7 nspa-3 | ||
| celegans | ((.(((((.((((.(((.((.......((((.(((((((...(((((((...((((.....)))))))))))...)))))))..)))).......)).))).))))))))).)). | 0.430 -29.54 |
| celegans | chromosome:V:14880494:14880608:1 | intergenic ## {SimpF: WRM0625cE01 1 fosmid,WRM0623dF08 1 fosmid,WRM0639cE11 1 fosmid,WRM0613bG05 1 fosmid} |
block7412 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.073 | no | no | 0.46/0.46 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 32 | 0 | 5arm | 3 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------UUGUUGG--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------GTTGTTGGGAGAGTTATTGGGATC----------------------------------------------------------- | 24 | 1 | |
| celegans | gacggcagtgtagatggcattcatcttgaggtGTTGTTGGGAGAGTTATTGGGATCgatttgatcgtgatttgaatgacaatttcctccttatttataccaactatttgtcatca | ||
| ******************************************************************************************************************* | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................................................................. | H12D21.1 H12D21.1 nspa-1 | ||
| celegans | ((.(((((.((((.(((.((.......((((.(((((((...(((((((...((((.....)))))))))))...)))))))..)))).......)).))).))))))))).)). | 0.430 -29.54 |
| celegans | chromosome:V:14886862:14886976:1 | Opposite_strand|Boundary_non-coding|H12D21.1|H12D21.1 ## H12D21.1|protein_coding|nspa-1|Nematode Specific Peptide family/group A family member (nspa-2) [Source:RefSeq_peptide;Acc:NP_001024007] ## {SimpF: WRM0625cE01 1 fosmid,yk576e10 1 RNAi,WRM0628aA08 1 fosmid,WRM0613bG05 1 fosmid,WRM0633cB11 1 fosmid} |
block8090 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.150 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 7 | 4 | 5arm | 2 | nd | 0.25 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------UUGACCG---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------GTTGACCGCCCAGTATAGCG---------------------------------- | 20 | 1 | |
| celegans | tctctctGTTGACCGCCCAGTATAGCGggttggggagccgcactggggtcaagccggaaga | ||
| ************************************************************* | |||
| celegans | (((.(((((((((..((((((...((((.((...)).)))))))))))))))..))))))) | 1.000 -23.00 |
| celegans | chromosome:X:17129332:17129392:-1 | intergenic ## {SimpF: WRM068dD10 -1 fosmid,WRM0624aD11 -1 fosmid,WRM0639cF01 -1 fosmid,WRM0638bF05 -1 fosmid,WRM0629cB04 -1 fosmid,WRM0640cF10 -1 fosmid,WRM062cE08 -1 fosmid,WRM0614dG04 -1 fosmid} |
block8117 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.479 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 6 | 5arm | 2 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------CUUGGAG-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------GCTTGGAGAATGGTCACAGCT------------------------------------------- | 21 | 1 | |
| celegans | atgattGCTTGGAGAATGGTCACAGCTacgggaccatcttttgtgagtgacatgttcttttcctgatgat | ||
| ********************************************************************** | |||
| celegans | ((.(((....(((((((((((((...(((((((.....))))))).))))).))))))))....))).)) | 0.970 -14.00 |
| celegans | chromosome:X:264516:264585:1 | intergenic |
block8439 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.67/0.67 | 21/21/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 13 | 10 | 3arm | 1 | nd | 0.19 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------GACCGGG-------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------------------------------CGACCGGGAATAGCCTAGCGG------------- | 21 | 2 | |
| celegans | cgcgcgaattggccgtcagtgggtttccgactcccttcgattagctgacgtgtcaacatggtgcatCGACCGGGAATAGCCTAGCGGctagggtgcgtga | ||
| **************************************************************************************************** | |||
| celegans | ((((((..((((((((...((((((......((((.(((((..((...((((....))))..)))))))..))))..))))))))))))))..)))))). | 0.960 -42.60 |
| celegans | chromosome:X:9191713:9191812:1 | intergenic ## {SimpF: WRM0612bC02 1 fosmid,oe = 1.07 0 CpG,WRM0610cE08 1 fosmid,WRM0620dF09 1 fosmid,WRM0622bB10 1 fosmid,WRM0637cC07 1 fosmid,WRM0628dH07 1 fosmid,WRM0624aE04 1 fosmid,WRM0624bA11 1 fosmid} |
block52 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.293 | no | no | 0.17/0.17 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 6 | 3arm | 3 | nd | 0.22 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------UAUUUUU------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------GTATTTTTTTCTGAATTT-------- | 18 | 1 | |
| celegans | gaaaaactgtgaatttttaaaaaatgtttgaaggcaaacgaaacttccaGTATTTTTTTCTGAATTTttatttct | ||
| *************************************************************************** | |||
| celegans | ((((......((((((..((((((((((.((((..........)))).))))))))))...))))))...)))). | 0.830 -10.10 |
| celegans | chromosome:I:936906:936980:-1 | intergenic ## {Repeats: dust 37058 37074 0 class=dust} ## {SimpF: WRM0633cD07 -1 fosmid,WRM0614aH12 1 fosmid,WRM0631cC01 -1 fosmid,WRM0623aG10 -1 fosmid,WRM0629bB12 1 fosmid,WRM067aA07 -1 fosmid} |
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