other hairpins
novel_loopOverlap_nonpairedHIGH_bulgeHIGH (18 loci)
block4717 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.170 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 37 | -4 | 5arm_loop | 1 | nd | 0.45 | 5 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------AUUUGCU--------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------TATTTGCTTTTGTAGAACTG--------------------------------------------------- | 20 | 2 | |
| celegans | taacttgatatgagctagtagaaaatgactatattaaTATTTGCTTTTGTAGAACTGactttgtgaaattaaaatattttaagtttcactagatttttataaagttgt | ||
| ************************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | B0513.5 B0513.5 B0513.5 | ||
| celegans | ((((((.(((.((((((((.((....((((.....(((((((..(((..((((......))))..)))...)))))))...))))))))))).))).))).)))))). | 0.920 -18.10 |
| celegans | chromosome:IV:13871488:13871595:-1 | Same_strand|Intronic_coding|B0513.5|B0513.5 ## B0513.5|protein_coding|B0513.5|Probable proline oxidase, mitochondrial precursor (EC 1.5.99.8) (Proline dehydrogenase). [Source:UniProtKB/Swiss-Prot;Acc:O45228] ## {SimpF: WRM0638cG02 -1 fosmid,WRM0640bD11 -1 fosmid,yk248f7 -1 RNAi,WRM0616cC06 -1 fosmid} |
block5998 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.342 | no | no | 0.35/0.35 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 24 | -4 | 5arm_loop_3arm | 1 | nd | 0.35 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------AAGCUCU---------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------TAAGCTCTCGGAATTTTCTT---------------------------- | 20 | 2 | |
| celegans | tcgttatcagattttataaattagTAAGCTCTCGGAATTTTCTTaaattttcagttttaaagtcaaaacgac | ||
| ************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24a.1 Y57G11C.24 eps-8 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24h Y57G11C.24 eps-8 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24d.1 Y57G11C.24 eps-8 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24a.3 Y57G11C.24 eps-8 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24d.6 Y57G11C.24 eps-8 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24d.2 Y57G11C.24 eps-8 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24g Y57G11C.24 eps-8 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24d.9 Y57G11C.24 eps-8 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24d.4 Y57G11C.24 eps-8 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24a.2 Y57G11C.24 eps-8 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y57G11C.24d.7 Y57G11C.24 eps-8 | ||
| celegans | (((((....(((((((.........(((((...(((((((....))))))).))))))))))))..))))). | 0.640 -8.70 |
| celegans | chromosome:IV:14880792:14880863:1 | Same_strand|Intronic_non-coding|Y57G11C.24a.2|Y57G11C.24 ## Same_strand|Intronic_coding|Y57G11C.24g|Y57G11C.24 ## Same_strand|Boundary_non-coding|Y57G11C.24d.8|Y57G11C.24 ## Y57G11C.24|protein_coding|eps-8|eps-8 is predicted to encode five protein isoforms with similarity to mouse epidermal growth factor receptor kinase substrate that affects embryonic viability, growth, locomotion, osmoregulation, and larval viability. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] ## {SimpF: WRM0628aH09 1 fosmid,WRM0617bF06 1 fosmid,WRM0619cE05 1 fosmid,[cgc5194]:gei-19 1 RNAi} |
block6286 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.525 | no | no | 0.33/0.33 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | -3 | 5arm_loop | 1 | nd | 0.42 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------UUUUCAG-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------TTTTTCAGGTGCTTTACGTAAAGT---------------------------------------------------- | 24 | 1 | |
| celegans | gttattttttaaaTTTTTCAGGTGCTTTACGTAAAGTttaaaattatgtttttatttgttagattatttatatttatttttaaatgaca | ||
| ***************************************************************************************** | |||
| celegans | (((((((....(((((..((((((....((((((.........))))))...))))))..)))))................))))))). | 0.410 -9.05 |
| celegans | chromosome:MtDNA:507:595:1 | intergenic ## {Repeats: dust 417 422 0 class=dust} |
block6383 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.393 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | -1 | 3arm | 2 | nd | 0.33 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------AACUGAU-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------GAACTGATCGAGGCAATATGC------------------- | 21 | 1 | |
| celegans | gcctgtggtacggtagtgcgcggctggattggatgggtttgaGAACTGATCGAGGCAATATGCatctgtgaagccagagagt | ||
| ********************************************************************************** | |||
| celegans | ((((.((((((((..(((((..(((......(((.((((....)))).)))..)))....)))))))))...)))).)).)) | 0.890 -21.40 |
| celegans | chromosome:V:2012088:2012169:-1 | intergenic ## {SimpF: F59A7.7 -1 Expression_profile,WRM0641dA06 -1 fosmid,WRM0615aD05 -1 fosmid,WRM0613dD02 -1 fosmid} |
block6387 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.149 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 12 | -4 | 5arm_loop | 1 | nd | 0.52 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------CAGAAUU---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------GCAGAATTTGGAGGATTATCT--------------------------------------- | 21 | 1 | |
| celegans | cgggaacaagtgGCAGAATTTGGAGGATTATCTgaaaattgtttgaatggcttgaaggcttgggaaatctga | ||
| ************************************************************************ | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<---------------------------------------------- | F36F12.7 F36F12.7 F36F12.7 | ||
| celegans | ((((..((((((((...(((..((.((((.......)))).))..))).))).....))))).....)))). | 0.980 -14.20 |
| celegans | chromosome:V:2099398:2099469:-1 | Opposite_strand|Boundary_coding|F36F12.7|F36F12.7 ## F36F12.7|protein_coding|F36F12.7|F36F12.7 [Source:RefSeq_peptide;Acc:NP_503570] ## {SimpF: WRM0624cD07 -1 fosmid} |
block6837 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.155 | no | no | 0.35/0.35 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 26 | -1 | 3arm | 1 | nd | 0.55 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------ACUGUAG-------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------AACTGTAGTATCCTCCAATT-------------------------- | 20 | 1 | |
| celegans | gtgaagtttttcagcttgtagtgaaacgggtcgaaaaacagtgaaacAACTGTAGTATCCTCCAATTaaagcacaaaatgacagaatcttgct | ||
| ********************************************************************************************* | |||
| celegans | ((((..(((((((..((((.((......((..((...(((((......)))))....))..)).......))))))..))).))))..)))). | 0.930 -18.02 |
| celegans | chromosome:V:15426315:15426407:-1 | intergenic ## {SimpF: WRM0641aB12 -1 fosmid} |
block8088 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.069 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 22 | -2 | 5arm_loop | 4 | nd | 0.35 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------GAGUAUU------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------TGAGTATTCATTGGGTTGCC------------------------------------ | 20 | 2 | |
| celegans | gtttgctcagcctggagattgaTGAGTATTCATTGGGTTGCCatccaacccaatgtcttatgtcgatggtgtcgaaac | ||
| ****************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | C30G4.6 C30G4.6 C30G4.6 | ||
| celegans | .((((....(((....(((..(((((....((((((((((.....)))))))))).))))))))...)))..)))).. | 0.900 -23.10 |
| celegans | chromosome:X:17075405:17075482:-1 | Same_strand|Intronic_coding|C30G4.6|C30G4.6 ## C30G4.6|protein_coding|C30G4.6|C30G4.6 [Source:RefSeq_peptide;Acc:NP_510760] ## {SimpF: WRM0635aF03 -1 fosmid,WRM0630bC01 -1 fosmid,WRM069dE11 -1 fosmid,WRM068dC05 -1 fosmid,WRM067bA08 -1 fosmid,WRM0621dF12 -1 fosmid,WRM0635bE05 -1 fosmid} |
block8717 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.682 | no | no | 0.39/0.39 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 24 | -4 | 5arm_loop | 1 | nd | 0.48 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------AUUCGUA-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------GATTCGTAATGGTAAAGGTAAGG----------------------------------------------------- | 23 | 1 | |
| celegans | ggtcacttgcactcgcaactgtaaGATTCGTAATGGTAAAGGTAAGGaaaaaaaggttgggcatctgctgcctcgaggtcagggggcggagttatgtgat | ||
| **************************************************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................................................................... | T25G12.11 T25G12.11 T25G12.11 | ||
| celegans | .(((((.((.((((((..(((.....((((....((((.((((...................))))..)))).))))..)))...))).))))).))))) | 0.600 -21.91 |
| celegans | chromosome:X:17237734:17237833:1 | Opposite_strand|Boundary_non-coding|T25G12.11|T25G12.11 ## T25G12.11|protein_coding|T25G12.11|T25G12.11 [Source:RefSeq_peptide;Acc:NP_741948] ## {SimpF: WRM0639cH01 1 fosmid,WRM0641dG06 1 fosmid,WRM0637aD03 1 fosmid,WRM0639dB09 1 fosmid,WRM0627dB01 1 fosmid,T25G12.8 1 Expression_profile,WRM0623bB06 1 fosmid} |
novel_lenNOK_shortStem (17 loci)
block513 [novel_lenNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.076 | no | no | 0.11/0.11 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 30 | 5arm | 1 | nd | 0.17 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----AUAAAAA------------------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----GATAAAAATTATTTTTGA-------------------------------------------------------------------------------------------------- | 18 | 1 | |
| celegans | cctgGATAAAAATTATTTTTGAaagaatttcaacccgatagcttaaacaattttccagcaattgttcttcaagggttcatctaaaaacttgaaaattctttgaaaatatagttttttgga | ||
| ************************************************************************************************************************ | |||
| celegans | ((.....(((((((((((((.(((((((((((((((...((....(((((((.......)))))))))....)))).............))))).)))))).)))).))))))))).)). | 0.450 -21.41 |
| celegans | chromosome:I:11297782:11297901:-1 | intergenic ## {SimpF: WRM0630dH11 -1 fosmid,WRM0625cG04 -1 fosmid,WRM0610aB04 -1 fosmid} |
block2389 [novel_lenNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.125 | no | no | 0.35/0.35 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 23 | 3arm | 1 | nd | 0.19 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------------AAUUGAG--------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------------------------------------------------GAATTGAGGTTTTTGCAAGGAAAATC--- | 26 | 1 | |
| celegans | ttgatttacagctagtgggtgccaacagtttaaaggagtcacagaaaaagtgtaaaaattatacacgagggatttaaaaaaattGAATTGAGGTTTTTGCAAGGAAAATCaga | ||
| ***************************************************************************************************************** | |||
| celegans | (((((((....((.(((((.(((..((((((((..(((((.........(((((.......)))))....))))).......)))))))).))).))))).))..))))))). | 0.760 -18.22 |
| celegans | chromosome:II:7873937:7874049:1 | intergenic ## {SimpF: WRM0620aH01 1 fosmid,WRM0621cG05 1 fosmid,WRM0627aG05 1 fosmid,WRM0636cB08 1 fosmid,WRM062bA04 1 fosmid,WRM0635aB03 1 fosmid,WRM0641bF08 1 fosmid} |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 23 | Next page | Jump 10 pages forward | Page 45 |
©2008 InteRNA Genomics B.V.