miR-Intess: classification

other hairpins

novel_loopOverlap_nonpairedHIGH (11 loci)

block2376 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	17	3	5arm	4	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	------------------GAUAUGU------------------------------------------------------------------------------------	1	miR-50/62/90
		len	cloning frequencies
			CE1
	-----------------TGATATGTTGTTGATGCC--------------------------------------------------------------------------	18	1
celegans	gtgaaatacgatgctgaTGATATGTTGTTGATGCCgtaattattatcaaaatacttctaatctctatcaataccaacatccacaacatatcacaccatctatatccaca
	*************************************************************************************************************
celegans	(((..(((.((((.((.(((((((((((.((((..(((................................)))...)))).))))))))))))).)))))))...))).	0.860 -24.45

celegans

chromosome:II:7471155:7471263:1

intergenic ## {SimpF: WRM0636aC11 1 fosmid,WRM0629bF07 1 fosmid,WRM0635bG06 1 fosmid,WRM0621dE08 1 fosmid,WRM0611cE04 1 fosmid,WRM0636cB07 1 fosmid}

block2736 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	8	18	5arm	1	nd	0.21	3	1	1	na	na

		reads	miRBase family seed
seed	---------UCUCCCA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------GTCTCCCATTACGAAACTT-------------------------------------------------------------------	19	1
celegans	taattttcGTCTCCCATTACGAAACTTtttcggcgttcaaaaatgctagcaatgaatgaaagtgagaaattgtgagtagggggatgctgattaa
	**********************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<..................................................................................	C01G12.3 C01G12.3 C01G12.3
celegans	(((((..((((((((.((((((...(((((((.((((((....((....)).))))))....)))))))))))))...))))))))..))))).	0.920 -26.90

celegans

chromosome:II:14582169:14582262:1

Opposite_strand|Boundary_non-coding|C01G12.3|C01G12.3 ## C01G12.3|protein_coding|C01G12.3|C01G12.3 [Source:RefSeq_peptide;Acc:NP_497030] ## {SimpF: WRM0630dH01 1 fosmid,WRM0637cF05 1 fosmid,C01G12.3 1 Expression_profile,WRM067cE01 1 fosmid,WRM0636cB04 1 fosmid}

block3072 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.007	no	no	0.38/0.38	26/26/0.00	0.0	0.0	1	0	1	0	18	11	3arm	1	nd	0.15	1	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------CGUCUCU------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------------------ACGTCTCTTCACTCTCTCACTATTTT------------------	26	1
celegans	aagaggttttagagaaatcagagatagtaggtagagtgtggagacccaggcagtggtctttggcatctcttttACGTCTCTTCACTCTCTCACTATTTTcgttctttttccactttt
	*********************************************************************************************************************
celegans	(((.((....((((((....((((((((.((.((((((.((((((..(((.((..((.....))..)))))....)))))).)))))))).))))))))..))))))..)).)))..	0.970 -34.50

celegans

chromosome:III:7153834:7153950:-1

intergenic ## {SimpF: WRM062bD05 -1 fosmid,WRM0637cC05 -1 fosmid,WRM0630bD07 -1 fosmid,WRM0635aD11 -1 fosmid,WRM063cE08 -1 fosmid,WRM0635dF05 -1 fosmid,WRM0620bD08 -1 fosmid,WRM0615dC02 -1 fosmid,WRM065cA12 -1 fosmid}

block3788 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	31	8	5arm	1	nd	0.06	1	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------GAAGAGA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	-------------------------------AGAAGAGAGATCAGCAAC--------------------------------------------------------------------	18	1
celegans	gccgaataaagaaggcgcgctcgaagagccgAGAAGAGAGATCAGCAACaacaacagctgctgatgtttttgctgatctctcttctcggctcttcgagcgcgtcttcttgcattggc
	*********************************************************************************************************************
celegans	(((((...((((((((((((((((((((((((((((((((((((((((.((((.(((...))).)))).))))))))))))))))))))))))))))))))))))))))...)))))	1.000 -93.30

celegans

chromosome:III:9408476:9408592:1

intergenic ## {Repeats: trf 1 2 0 class=trf} ## {SimpF: WRM066dG12 1 fosmid,WRM063bH04 1 fosmid,WRM0625cD09 1 fosmid}

block4170 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.40/0.40	25/25/0.00	0.0	0.0	3	0	1	0	11	6	3arm	1	nd	0.24	3	3	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------CUUAUUC----------------------------	3	novel
		len	cloning frequencies
			CE1
	-------------------------------------------------------------GCTTATTCGAGTGCTTGTATCAAGT-----------	25	3
celegans	gagtagaagtgcaaaatgcaggtagtcgaacgggctcatcgtctttgagtcgtttcgtcgaGCTTATTCGAGTGCTTGTATCAAGTatgaaatttca
	*************************************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................................	E03H12.5 E03H12.5 E03H12.5
celegans	(((.....((((...(((((((((.(((((..(((((..((..............))..)))))..))))).)))))))))...)))).....))).	0.980 -33.54

celegans

chromosome:IV:4977208:4977304:-1

intergenic ## {SimpF: WRM0633cB09 -1 fosmid,E03H12.5 -1 Expression_profile,WRM0630aF12 -1 fosmid,WRM065bG06 -1 fosmid}

block4213 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.28/0.31	25/26/0.00	0.0	0.2	4	0	1	0	15	5	3arm	2	nd	0.23	2	4	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------CAUAUUA---------------------------------	4	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------GCATATTATTGATTGATTCCAAGTTC---------------	26	3
	-----------------------------------------------------GCATATTATTGATTGATTCCAAGTT----------------	25	1
celegans	tcattgttatattcgaatttaaaatttccgtaatattgattcttttataatcaGCATATTATTGATTGATTCCAAGTTCgattagatcattgat
	**********************************************************************************************
	...............................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y59E9AR.2 Y59E9AR.2 Y59E9AR.2
celegans	(((.((...((.((((((((..((((((.((((((((((((.......)))))..))))))).))..))))..)))))))).))...)).))).	1.000 -18.10

celegans

chromosome:IV:5244942:5245035:-1

block5324 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.23/0.23	26/26/0.00	0.0	0.0	1	0	1	0	14	2	5arm	1	nd	0.12	3	1	1	na	na

		reads	miRBase family seed
seed	---------------UACGUUU------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
	--------------GTACGTTTTGTTTTAGTTTATAATTG------------------------------------------------------------	26	1
celegans	gaatcatggaatttGTACGTTTTGTTTTAGTTTATAATTGagaaataaatggaacttaattatgtaaattaaaattatgtaaattaaaatttcacggtta
	****************************************************************************************************
	<<<<<<<<<<<<..................................................................................................	F37C4.8 F37C4.8 F37C4.8
celegans	.((((.((((((((.(((((...(((((((((((((((((((............))))))..))))))))))))).))))).....)))))))).)))).	1.000 -22.30

celegans

chromosome:IV:3881175:3881274:1

intergenic ## {SimpF: F37C4.8 1 Expression_profile,WRM067bE07 1 fosmid,WRM0628dD05 1 fosmid,WRM0641bD04 1 fosmid,WRM0633cD09 1 fosmid}

block5414 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.28/0.31	25/26/0.00	0.0	0.2	4	0	1	0	15	5	3arm	2	nd	0.23	2	4	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------CAUAUUA---------------------------------	4	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------GCATATTATTGATTGATTCCAAGTTC---------------	26	3
	-----------------------------------------------------GCATATTATTGATTGATTCCAAGTT----------------	25	1
celegans	tcattgttatattcgaatttaaaatttccgtaatattgattcttttataatcaGCATATTATTGATTGATTCCAAGTTCgattagatcattgat
	**********************************************************************************************
	...............................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	Y59E9AR.8 Y59E9AR.8 Y59E9AR.8
celegans	(((.((...((.((((((((..((((((.((((((((((((.......)))))..))))))).))..))))..)))))))).))...)).))).	1.000 -18.10

celegans

chromosome:IV:5246165:5246258:1

block7644 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	17	3	5arm	4	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	------------------GAUAUGU------------------------------------------------------------------------------------	1	miR-50/62/90
		len	cloning frequencies
			CE1
	-----------------TGATATGTTGTTGATGCC--------------------------------------------------------------------------	18	1
celegans	gtgaaatacgatgctgaTGATATGTTGTTGATGCCgtaattattatcaaaatacttctaatctctatcaataccaacatccacaacatatcacaccatctatatccaca
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	R09H3.1 R09H3.1 R09H3.1
celegans	(((..(((.((((.((.(((((((((((.((((..(((................................)))...)))).))))))))))))).)))))))...))).	0.860 -24.45

celegans

chromosome:X:1659376:1659484:-1

Same_strand|Intronic_coding|R09H3.1|R09H3.1 ## R09H3.1|protein_coding|R09H3.1|R09H3.1 [Source:RefSeq_peptide;Acc:NP_508305] ## {SimpF: WRM066aA09 -1 fosmid,WRM0626bE10 -1 fosmid,WRM0641aB04 -1 fosmid,WRM0614bA02 -1 fosmid}

block7645 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	17	3	5arm	4	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	------------------GAUAUGU------------------------------------------------------------------------------------	1	miR-50/62/90
		len	cloning frequencies
			CE1
	-----------------TGATATGTTGTTGATGCC--------------------------------------------------------------------------	18	1
celegans	gtgaaatacgatgctgaTGATATGTTGTTGATGCCgtaattattatcaaaatacttctaatctctatcaataccaacatccacaacatatcacaccatctatatccaca
	*************************************************************************************************************
celegans	(((..(((.((((.((.(((((((((((.((((..(((................................)))...)))).))))))))))))).)))))))...))).	0.860 -24.45