C.elegans small RNAs

miR-Intess™

miR classification

miR expression

block4332_cand

block4332_cand

Cloning frequencies
absolute	CE1
block4332_cand 3arm	2
normalized	CE1
block4332_cand 3arm	0.001

block4332_cand relative cloning frequencies

block4332 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.45/0.45	20/20/1.00	0.0	0.0	2	0	1	0	30	6	3arm	1	nd	0.05	1	2	1	na	na

Families
Member of family miR-80/81/82 (seed GAGAUCA): cel-mir-82, cel-mir-81, cel-mir-80, block4332_cand

block4332 hairpin

		reads	miRBase family seed
seed	-----------------------------------------------------------GAGAUCA------------------------------------------	2	miR-80/81/82
		len	cloning frequencies
			CE1
	----------------------------------------------------------AGAGATCAGGCAATAGGTTC------------------------------	20	2
celegans	GTGACGATATTCAATTGCAACCTGTTGGTTGATCTCCTAC----CAAATAATGGA-TAAGAGATCAGGCAATAGGTTCAAAAGTGAATAATATTGATTTTTGAGTGAC
cbriggsae	----------------GAAACTTTGATGTTGTCATCTCA------AAATCAGTGA-GATCAGCTCA------AGGCTC------------------------------
cjaponica	------------------GGCATTCAACTTGATCTCCTACACCTCAATTCGAGGAGTAAGAGATCAAGGGTTTGACCC------------------------------
ppacificus	-----------------CTATATTTTCTCTGATCTCTCGCTC--TGCCTGACCGG-CAAGAGATCACGGAAAATGTGA------------------------------
cremanei	-----------------TGGCTTATTGATTGGTCTCCTAC----CACTTTTTGGA-TATGAGATCATTCGATGAGCCC------------------------------
	* * * * *
celegans	.......((((((.(((.(((((((((.((((((((.((( ((.....))). )).)))))))).))))))))))))...))))))...................	0.690 -33.70
cbriggsae	....((((((.((((..(((((( .......))) )))))))))) )))...	1.000 -13.70
cjaponica	((((.....(((((((((.(((.((((.....)))).))).)))))))))....)).)).	0.983 -25.20
ppacificus	.((((((((((.((((((((..... ((((.....)) )))))))))).)))))))))).	1.000 -24.60
cremanei	.((((((((((.(((((((.((( ((.....))). )).))))))).)))))))))).	1.000 -27.40

celegans	chromosome:IV:6660600:6660702:-1	intergenic ## {SimpF: WRM068bB04 -1 fosmid,WRM067cF04 -1 fosmid}
cbriggsae	chromosome:chrX:13344079:13344221:-1	Opposite_strand\|Intronic_coding\|NM_001108848 ## Same_strand\|Intronic_coding\|NM_001086847
cjaponica	chromosome:chrUn:22177437:22177579:-1	intergenic
ppacificus	chromosome:chrUn:45735264:45735406:-1	Same_strand\|Intronic_coding\|NM_063191
cremanei	chromosome:chrUn:120634238:120634380:1	intergenic

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