cel-mir-80
| absolute | CE1 |
| cel-mir-80 5arm | 4 |
| cel-mir-80 3arm | 24868 |
| normalized | CE1 |
| cel-mir-80 5arm | 0.003 |
| cel-mir-80 3arm | 17.372 |
sblock28 (miRBase cel-mir-80) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-80 | 0.005 | no | no | 0.28/0.50 | 18/25/0.99 | nd 0.0 0.0 | nd 0.0 0.0 | 0 4 23510 | 0 0 0 | 0 1 1 | 0 0 0 | 18 40 16 | 5 -15 11 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.09 0.50 0.18 | 1 5 2 | 24872 | 1 | 2 | 1 |
| Member of family miR-80/81/82 (seed GAGAUCA): cel-mir-82, cel-mir-81, cel-mir-80, block4332_cand |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------GAGAUCA---------------------------------- | 24430 | miR-80/81/82 |
| seed | -------------------------------------------------------------------AGAUCAU--------------------------------- | 251 | novel |
| seed | ----------------------------------------------------------------------UCAUUAG------------------------------ | 143 | novel |
| seed | -----------------------------------------------------------------UGAGAUC----------------------------------- | 26 | novel |
| seed | -----------------------------------------------------------------------CAUUAGU----------------------------- | 11 | novel |
| seed | ---------------------------------------------------------------------AUCAUUA------------------------------- | 7 | novel |
| seed | ---------------------------------------------AUCCGCA------------------------------------------------------- | 4 | novel |
| seed | ----------------------GCUUUCG------------------------------------------------------------------------------ | 0 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------TGAGATCATTAGTTGAAAGCCG-------------------- | 22 | 23510 | |
| -----------------------------------------------------------------TGAGATCATTAGTTGAAAGCC--------------------- | 21 | 444 | |
| ------------------------------------------------------------------GAGATCATTAGTTGAAAGCCGA------------------- | 22 | 197 | |
| -----------------------------------------------------------------TGAGATCATTAGTTGAAAGCCGAA------------------ | 24 | 173 | |
| ---------------------------------------------------------------------ATCATTAGTTGAAAGCCGAA------------------ | 20 | 140 | |
| cel-miR-80 | -----------------------------------------------------------------TGAGATCATTAGTTGAAAGCCGA------------------- | 23 | 87 |
| -----------------------------------------------------------------TGAGATCATTAGTTGAAAGC---------------------- | 20 | 77 | |
| -----------------------------------------------------------------TGAGATCATTAGTTGAAAG----------------------- | 19 | 57 | |
| ------------------------------------------------------------------GAGATCATTAGTTGAAAGCCG-------------------- | 21 | 52 | |
| -----------------------------------------------------------------TGAGATCATTAGTTGAAA------------------------ | 18 | 52 | |
| -----------------------------------------------------------------TGAGATCATTAGTTGAAAGCCGAAT----------------- | 25 | 30 | |
| ----------------------------------------------------------------TTGAGATCATTAGTTGAAAGCCG-------------------- | 23 | 23 | |
| ----------------------------------------------------------------------TCATTAGTTGAAAGCCGAA------------------ | 19 | 11 | |
| --------------------------------------------------------------------GATCATTAGTTGAAAGCCG-------------------- | 19 | 6 | |
| --------------------------------------------AATCCGCA-AGCCCATGTTGT------------------------------------------ | 20 | 4 | |
| ----------------------------------------------------------------TTGAGATCATTAGTTGAA------------------------- | 18 | 3 | |
| ---------------------------------------------------------------------ATCATTAGTTGAAAGCCGA------------------- | 19 | 2 | |
| ------------------------------------------------------------------GAGATCATTAGTTGAAAGCC--------------------- | 20 | 1 | |
| ------------------------------------------------------------------GAGATCATTAGTTGAAAGCCGAA------------------ | 23 | 1 | |
| --------------------------------------------------------------------GATCATTAGTTGAAAGCCGAA------------------ | 21 | 1 | |
| ---------------------------------------------------------------------ATCATTAGTTGAAAGCCG-------------------- | 18 | 1 | |
| cel-miR-227 | ------------------A---GCTTTCGA-CATGATTCTGAAC--------------------------------------------------------------- | 22 | - |
| celegans | ATGGACACTCGTTCGCTCA---GCTTTCGA-CATGATTCTGAACAATCCGCA-AGCCCATGTTGTTGAGATCATTAGTTGAAAGCCGAATGA-TCAGAGATATC--- | ||
| cbriggsae | TTGGACACTCTTTCGCTCA---GCTTTCGA-CATGATTCTAAACAATACGCTGTCGCAATGTTGTTGAGATCATTAGTTGAAAGCCGAACGA-TTCGAGATATCCAA | ||
| cjaponica | --GGTTTCTCTGTCGCTCA---GCTTTCGA-CATGATTCTGAACAATTCCACACATTTATGTTGTTGAGATCATTAGTTGAAAGCCGAATGA-TTCGAGCGAACC-- | ||
| cbrenneri | --GGACACTCTTTCGCTCA---GCTTTCGA-CATGGTTCTGAACAATACGCATTGCATATGTTGTTGAGATCATTAGTTGAAAGCCGAATGA-TTTGAGATATCC-- | ||
| ppacificus | ---GTCTCTTTATTACTCGTGCTCTTTCTCTCTTCACTCTGATCGGTGA-----------------GAGATCACTAG---------AAATAA-----AGAGAT---- | ||
| cremanei | --GGACACTCTTTCGCTCA---GCTTTCGA-CATGATTCTAAACAATACGTCGAGACAATGTTGTTGAGATCATTAGTTGAAAGCCGAACGATTTTGAGATATCC-- | ||
| * ** * *** ***** * * *** * * * ******* *** ** * ** * | |||
| celegans | .......(((..(((.((. (((((((( ((((((.((.((((((.(... .).....)))))).)))))))..))))))))).)).))) ...)))..... | 1.000 -30.50 | |
| cbriggsae | .((((..(((..(((.((. (((((((( (((((.(((.(((((((.((....))..))))))).)))))))..))))))))).)).))) ...)))...)))). | 1.000 -34.80 | |
| cjaponica | ((((((((.((((.((. (((((((( (((((.(((.((((((.............)))))).)))))))..))))))))).)).))) )..))).))))) | 0.999 -33.52 | |
| cbrenneri | (((..(((..(((.((. (((((((( (((((.(((.(((((((.((...))...))))))).)))))))..))))))))).)).))) ...)))...))) | 1.000 -31.00 | |
| ppacificus | (((((((((((.((.(((.((((((.((..((.....))..)).)) )))).))).)) .))))) )))))) | 1.000 -26.20 | |
| cremanei | (((..(((..(((.((. (((((((( (((((.(((.(((((((.((....))..))))))).)))))))..))))))))).)).)))....)))...))) | 1.000 -30.80 |
| celegans | chromosome:III:8865177:8865274:-1 | intergenic ## {SimpF: WRM0637aD12 -1 fosmid,WRM0622dD10 -1 fosmid} ## {MIR: cel-mir-80} |
| cbriggsae | chromosome:chrIII:13406581:13406682:-1 | Opposite_strand|Intronic_coding|NM_001026518 ## Same_strand|Intronic_coding|NM_070558 ## {MIR: cbr-mir-80} |
| cjaponica | chromosome:chrUn:4628117:4628214:1 | Same_strand|Intronic_coding|NM_080787 ## Opposite_strand|Intronic_coding|NM_078517 |
| cbrenneri | chromosome:chrUn:17761161:17761258:-1 | Same_strand|Intronic_coding|NM_209159 |
| ppacificus | chromosome:chrUn:156165257:156165325:1 | intergenic |
| cremanei | chromosome:chrUn:98380888:98380986:-1 | intergenic |
©2008 InteRNA Genomics B.V.