miR-Intess: cel-mir-82

cel-mir-82

Cloning frequencies
absolute	CE1
cel-mir-82 3arm	19854.500
normalized	CE1
cel-mir-82 3arm	13.870

block7661 (miRBase cel-mir-82) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-82	0.002	no	no	0.42/0.50	18/24/0.97	0.0	0.0	16772	0	1	0	15	5	3arm	1	nd	0.14	1	19881	1	na	na

Families
Member of family miR-80/81/82 (seed GAGAUCA): cel-mir-82, cel-mir-81, cel-mir-80, block4332_cand

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------GAGAUCA-------------------------------------------------	19547	miR-80/81/82
seed	--------------------------------------------------------------------------------------AGAUCAU------------------------------------------------	182	novel
seed	-----------------------------------------------------------------------------------------UCAUCGU---------------------------------------------	145	novel
seed	----------------------------------------------------------------------------------------AUCAUCG----------------------------------------------	7	miR-392
		len	cloning frequencies
			CE1
cel-miR-82	------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT-----------------------------------	22	16772
	------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG------------------------------------	21	1944
	------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCC--------------------------------------	19	438
	------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTT----------------------------------	23	315
	-------------------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGT-----------------------------------	21	149
	----------------------------------------------------------------------------------------ATCATCGTGAAAGCCAGT-----------------------------------	18	139
	------------------------------------------------------------------------------------TGAGATCATCGTGAAAGC---------------------------------------	18	53
	-------------------------------------------------------------------------------------GAGATCATCGTGAAAGCCAG------------------------------------	20	23
	------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCCA-------------------------------------	20	22
	-------------------------------------------------------------------------------------GAGATCATCGTGAAAGCC--------------------------------------	18	6
	----------------------------------------------------------------------------------------ATCATCGTGAAAGCCAGTT----------------------------------	19	5
	-------------------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGTT----------------------------------	22	4
	---------------------------------------------------------------------------------------GATCATCGTGAAAGCCAGT-----------------------------------	19	4
	---------------------------------------------------------------------------------------GATCATCGTGAAAGCCAG------------------------------------	18	3
	------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTTG---------------------------------	24	3
	----------------------------------------------------------------------------------------ATCATCGTGAAAGCCAGTTG---------------------------------	20	1
celegans	--------------------GAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAAT----GACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTC--------------------
cbriggsae	-----TTCGATATTAAAACTATAAAAAGTTCTTCTAGCGACAGGTTTTCGCCGTGATCTGCAGAGTTCCATGAAGAAA-ACATCTGAGATCATCGTGAAAGCCAGTTGCTTAAGAGGACTCATTGTGAAAAACTAGAGAA-
ppacificus	---------------------------TCACTCCCGGCATGCGGTTTTCACGTTGATCTG-AGAGC---TAATCGATATGTTTCTGAGATCATAGTGAAAGCTACTTGCCGAAGTGA------------------------
cjaponica	--------------------------TATTCTTCTAGCGACCGGTTTTCTCCGTGATCTGCAGAGC----TTTTGCAT-ACTTCTGAGATCATCGTGAAAGCCAGTTGCTTAAAAGAATAGTTTATC--------------
cbrenneri	TGGAAGTATTAAAGTGAAATAAAATATGTTCTCCTAGCAACAGGTTCTCACTGTGATCTGCAGAGT---ATAAAGCCT-ACATCTGAGATCATCGTGAAAGCCAGTTGCTT--ACGAACTAAATTCATAAAAAGTAGTCTA
cremanei	--------------------------AGTTCTTCTAGCGACAGGTTTTCCCTGTGATCTGCAGAGT---ACAAAGAAATACATCTGAGATCATCGTGAAAGCCAGTTGTTTCCAAGAACT---------------------
	** * **** * * ********* ****** * *** *
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	T07D1.2.2 T07D1.2 T07D1.2
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	T07D1.2.1 T07D1.2 T07D1.2
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	T07D1.2.3 T07D1.2 T07D1.2
celegans	......(((((....((((((.(((((((.(.(((((((.((((.( ((.......)))))))))))))).).))))))).)))))).....))))).	1.000 -35.30
cbriggsae	..............(((((..(((((((..((((((.(((((((((.(((((((.((((.(((......))). ...))))))))))).))))))))).))))))...)))))))..))))).............	0.945 -45.70
ppacificus	(((((..(((((...(((((((((..((((((. ((((( ..........))).)).))))))..)))))))))...))))).)))))	1.000 -36.00
cjaponica	(((((((..((((((.(((((((...(((((((.(((((( ....)).. ...)))))))))))...))))))).))))))...))))))).......	1.000 -36.60
cbrenneri	((((..((((...(((((.........((((....((((((.((((.((((.(((((((.(((((( (.......) )).))))))))))).)))).)))).)))))). ..))))....)))))....)))).))))	0.925 -39.02
cremanei	(((((((..((((((.(((((((...(((((((.(((((( (........))).)))))))))))...))))))).))))))...)))))))	1.000 -34.90

celegans	chromosome:X:2435253:2435349:-1	Same_strand\|Intronic_coding\|T07D1.2.1\|T07D1.2 ## T07D1.2\|protein_coding\|T07D1.2\|T07D1.2 [Source:RefSeq_peptide;Acc:NP_508444] ## {SimpF: WRM069cB10 -1 fosmid,WRM0630cF03 -1 fosmid,WRM062aG12 -1 fosmid,WRM0618aC04 -1 fosmid,WRM0636aE07 -1 fosmid,WRM0631bE05 -1 fosmid} ## {MIR: cel-mir-82}
cbriggsae	chromosome:chrX:4423722:4423855:1	Same_strand\|Intronic_coding\|NM_001087279 ## Opposite_strand\|Intronic_coding\|NM_001109816 ## {MIR: cbr-mir-82}
ppacificus	chromosome:chrUn:128697181:128697266:-1	Same_strand\|Intronic_coding\|NM_022416 ## Opposite_strand\|Intronic_coding\|NM_001028815 ## {Repeats: GA-rich 1 89 -1 class=Low_complexity}
cjaponica	chromosome:chrUn:6900594:6900689:-1	intergenic
cbrenneri	chromosome:chrUn:976012:976146:1	intergenic
cremanei	chromosome:chrUn:34149150:34149240:1	intergenic

miR-Intess™

cel-mir-82

block7661 (miRBase cel-mir-82) [miRNAknown_cloningHIGH_randfoldOK]