other hairpins
block4613 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.58/0.62 | 21/24/1.00 | 0.0 | 1.5 | 2 | 0 | 1 | 0 | 0 | 7 | 3arm | 3 | nd | 0.09 | 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------GGGUUCG---------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------TGGGTTCGAACCCCACTCGTGCTA | 24 | 1 | |
| ------------------------------------------------------TGGGTTCGAACCCCACTCGTG--- | 21 | 1 | |
| cbriggsae | atggccgagtggttaaggcgttggacttaagttccaatggtgggtaacaccgcgTGGGTTCGAACCCCACTCGTGCTA | ||
| ****************************************************************************** | |||
| ---------------------------------------------------------------------------------------- | NM_001099298 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_077585 | ||
| cbriggsae | .(((((((((((....((..(((((((((.((......((((.....)))))).))))))))).))))))))).)))) | 0.430 -29.80 |
| cbriggsae | chromosome:chrX:15119940:15120017:-1 | Opposite_strand|Intronic_non-coding|NM_001099298|Scn2a1 ## Same_strand|Intronic_non-coding|NM_077585|Y62H9A.5 ## {Repeats: no} |
block5097 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.119 | no | no | 0.36/0.36 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 3 | 5arm | 1 | nd | 0.23 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --CAUGUCA---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -ACATGTCAGATTTGAGTATCTC-------------------------------------- | 22 | 1 | |
| cbriggsae | aACATGTCAGATTTGAGTATCTCttgtaaacaaaagatattaagggttgaagcgacagttt | ||
| ************************************************************* | |||
| ----------------------------------------------------------------------- | NM_011978 | ||
| cbriggsae | (((.((((.((((..(((((((.(((....))).)))))))...)))).....))))))). | 0.940 -11.20 |
| cbriggsae | chromosome:chrX:14752540:14752600:1 | Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {Repeats: no} |
block5260 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.552 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 0 | 3arm | 1 | nd | 0.20 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------AGUCGAG---------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------GAGTCGAGGTAGTCAATGAC---- | 20 | 1 | |
| cbriggsae | tttgggttgatcactttccagaaatcgtacggctccaaatacttcataGAGTCGAGGTAGTCAATGACaagc | ||
| ************************************************************************ | |||
| cbriggsae | ((((.(((((..((((.............((((((.............))))))))))..)))))..)))). | 0.770 -12.83 |
| cbriggsae | chromosome:chrX:20317523:20317594:1 | {Repeats: no} |
block1716 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.292 | no | no | 0.46/0.46 | 24/24/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 4 | 14 | 3arm | 1 | nd | 0.17 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------AAUUGGU-------------------- | 2 | miR-358 |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------------------------------GAATTGGTTGGTCATCGTTCGAAG---- | 24 | 2 | |
| cbriggsae | aactatttctgaagacaatcaaactcaccgaactctcagttgctgaagctcgtcgaaatccattcgaggtccgtaattGAATTGGTTGGTCATCGTTCGAAGagtt | ||
| ********************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001087791 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001047975 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001858 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_213264 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_131292 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_080680 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001845 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_021881 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_007739 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_181277 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001083336 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_176995 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001006951 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001081764 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001046199 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001005153 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001002980 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001014971 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_204790 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001082666 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_079524 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_206442 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_206443 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_212528 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_201478 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_182968 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_033150 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_080629 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_000089 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_005381 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001107100 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_000393 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_080681 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_005718 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_004845 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_080680 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001844 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_080679 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001854 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_212579 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_080630 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_007736 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001083844 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_007738 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_031366 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_199214 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_009926 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_031362 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_031365 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_134452 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_000092 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_000091 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001024960 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001024959 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_078485 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001851 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001079992 | ||
| -------------------------------------------------------------------------------------------------------------------- | NM_001130548 | ||
| cbriggsae | ((((.((((.(((((..((((.....(((((....((((((((.((..((((............)))).)).)))))))).)))))))))..)).))))))))))) | 0.460 -23.10 |
| cbriggsae | chromosome:chrIII:6677067:6677172:1 | Same_strand|Intronic_coding|NM_001087791|col2a1b ## Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_213264|col9a1 ## Same_strand|Intronic_non-coding|NM_176995|C230078M08Rik ## {Repeats: no} |
novel_lenNOK_nonpairedHIGH (29 loci)
block163 [novel_lenNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.337 | no | no | 0.42/0.42 | 19/19/0.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 7 | 31 | 3arm | 2 | nd | 0.32 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------AGUUUGU------------------ | 3 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------------------TAGTTTGTCTGATGGAGTC------- | 19 | 3 | |
| cbriggsae | ctcgaaattttgtccgaaatcaaacaaatgaaaacaatttttcagtttcatcaagccttgataaaacttgtgaatctttgattatctaaTAGTTTGTCTGATGGAGTCaatgagt | ||
| ******************************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007386 | ||
| cbriggsae | ((((..((((..((.((...(((((....((.(((((...((((((((.((((.....)))).)))))...)))...))).)).)).....))))))).))..))))...)))). | 0.400 -18.50 |
| cbriggsae | chromosome:chrI:8608098:8608212:-1 | Same_strand|Intronic_non-coding|NM_007386|Aco1 ## {Repeats: no} |
block164 [novel_lenNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.337 | no | no | 0.42/0.42 | 19/19/0.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 7 | 31 | 3arm | 2 | nd | 0.32 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------------AGUUUGU------------------ | 3 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------------------TAGTTTGTCTGATGGAGTC------- | 19 | 3 | |
| cbriggsae | ctcgaaattttgtccgaaatcaaacaaatgaaaacaatttttcagtttcatcaagccttgataaaacttgtgaatctttgattatctaaTAGTTTGTCTGATGGAGTCaatgagt | ||
| ******************************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007386 | ||
| cbriggsae | ((((..((((..((.((...(((((....((.(((((...((((((((.((((.....)))).)))))...)))...))).)).)).....))))))).))..))))...)))). | 0.400 -18.50 |
| cbriggsae | chromosome:chrI:8617838:8617952:-1 | Same_strand|Intronic_non-coding|NM_007386|Aco1 ## {Repeats: no} |
block626 [novel_lenNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.377 | no | no | 0.74/0.74 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | 17 | 5arm | 1 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------AGGUGGC----------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------GAGGTGGCGGCGCATGAGC------------------------------------------------------------------------------ | 19 | 1 | |
| cbriggsae | tctggtgcatattgttGAGGTGGCGGCGCATGAGCtttagcccctgcagactctaaaagtgtgtactttggctggttctccatatcgccacgtggcgcttgacgctttctgga | ||
| ***************************************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------------------------------- | NM_001002069 | ||
| --------------------------------------------------------------------------------------------------------------------------- | NM_214811 | ||
| cbriggsae | (((((.((.....((..((((.((((((...(((..((((((..((((.(((.....))).))))....))))))..))).....))))..)).)).))..))))...))))) | 0.870 -34.20 |
| cbriggsae | chromosome:chrII:3994381:3994493:-1 | Opposite_strand|Intronic_non-coding|NM_001002069|rpl37 ## {Repeats: no} |
block1130 [novel_lenNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 12 | 7 | 5arm | 1 | nd | 0.32 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------AACAAGC--------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------GAACAAGCTGGAGCAGAGT---------------------------------------------------------- | 19 | 1 | |
| cbriggsae | ccaacgtcatctGAACAAGCTGGAGCAGAGTcgaaatctccatgaattcgtttccaggcaacacctttttcagatccaacacttttggc | ||
| ***************************************************************************************** | |||
| cbriggsae | ((((.((.(((((((.(((.((..((.(((.((((.((.....)).)))).)))...))..)).))).)))))))...))....)))). | 0.530 -20.90 |
| cbriggsae | chromosome:chrII_random:298087:298175:-1 | {Repeats: no} |
block1187 [novel_lenNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.382 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 31 | 4 | 3arm | 1 | nd | 0.37 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------UUGAAUU------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------GTTGAATTGAACTCATGTC------------------------------- | 19 | 1 | |
| cbriggsae | aagacgtgtcggactgcttagaattcgggctgagacaaaattcttgggattctccttGTTGAATTGAACTCATGTCagagatctggaaaaagaaagttggggtcttg | ||
| *********************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_103505 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001012230 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001123960 | ||
| cbriggsae | (((((...((.((((..(((((.(((.(((((((....(((((..(((.....)))....)))))...)))).))).))).)))))........)))).))))))). | 0.870 -24.80 |
| cbriggsae | chromosome:chrII_random:2073273:2073379:-1 | Same_strand|Intronic_coding|NM_103505|AT1G43770 ## Same_strand|Intronic_non-coding|NM_001012230|Xkrx ## {Repeats: no} |
block1210 [novel_lenNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 22 | 19 | 5arm | 1 | nd | 0.39 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------UUGACAU--------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------GTTGACATATTCCTCCAT----------------------------------------------------------------------- | 18 | 2 | |
| cbriggsae | agtttggaacaagaacatttttGTTGACATATTCCTCCATaaagaacatgacgatgatgatatccgcgtcgttgattctttggaagattgcgattgttcttgccgtaaact | ||
| *************************************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------------------------- | NM_053514 | ||
| ------------------------------------------------------------------------------------------------------------------------- | NM_018362 | ||
| ------------------------------------------------------------------------------------------------------------------------- | NM_001039354 | ||
| ------------------------------------------------------------------------------------------------------------------------- | NM_001033223 | ||
| cbriggsae | ((((((...((((((((.....((((.((...((.((((..(((((...(((((((.((.....)))))))))..))))))))).)).))))))))))))))...)))))) | 0.990 -29.70 |
| cbriggsae | chromosome:chrII_random:247912:248022:1 | Opposite_strand|Intronic_coding|NM_053514|Lin7a ## Opposite_strand|Intronic_non-coding|NM_018362|LIN7C ## {Repeats: no} |
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©2008 InteRNA Genomics B.V.