miR-Intess: classification

other hairpins

block1478 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.980	no	no	0.54/0.54	26/26/0.00	0.0	0.0	1	0	1	0	24	1	3arm	2	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------UGCCUUG------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------GTGCCTTGAGCAATGCCTTGGTGTCT------------------------	26	1
cbriggsae	gaaattatgttaccccttgggaccagatctgtgcggctcggaaaacagaatatatccatGTGCCTTGAGCAATGCCTTGGTGTCTcttctgaatacttgaacatcttcc
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066606
cbriggsae	(((...(((((.....((.(((..(((((((.((.((((((...(((...........)))...))))))...))..))).))))..))).))......))))).))).	0.510 -17.60

cbriggsae

chromosome:chrIII:8775413:8775521:-1

Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## Same_strand|Intronic_coding|NM_066606|lin-12 ## {Repeats: no}

block2359 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.085	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	9	5	3arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------UACCCUC--------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------TTACCCTCTGACAATTCTG---------	19	1
cbriggsae	tttacggtttcattttttggataaagttacagtatttttaaaaacaatatTTACCCTCTGACAATTCTGaaactgtaa
	******************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_123965
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_024349
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_019034
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016369
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032772
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040602
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093711
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095157
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199692
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033835
	----------------------------------------------------------------------------------------	NM_001047948
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175092
	----------------------------------------------------------------------------------------	NM_065286
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123190
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126828
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001010953
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001127285
cbriggsae	.(((((((((((.((.(((((....((...((((((.........)))))).))..))))).))...)))))))))))	0.840 -11.50

cbriggsae

chromosome:chrIV:665908:665985:1

Same_strand|Intronic_coding|NM_123965|ARAC2 ## Same_strand|Intronic_non-coding|NM_024349|Ak1 ## Opposite_strand|Intronic_coding|NM_001047948|LOC499584 ## Opposite_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block2404 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.373	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	17	0	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------UUAGUAC----------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------TTTAGTACAAATCAGTGAG-----------------	19	1
cbriggsae	ggtttcaggattttcataaattttcgaaatttctagaaatatgcTTTAGTACAAATCAGTGAGaatggtgaaaaaaacta
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047559
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067544
	------------------------------------------------------------------------------------------	NM_064155
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075433
	------------------------------------------------------------------------------------------	NM_075433
cbriggsae	(((((.....(((((((..(((((((..(((((((((.......)))))...))))...))))))).)))))))))))).	0.460 -10.90

cbriggsae

chromosome:chrIV:1462352:1462431:1

Same_strand|Intronic_non-coding|NM_001047559|Y41E3.1 ## Same_strand|Intronic_coding|NM_067544|F09C11.1 ## Opposite_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Opposite_strand|Intronic_coding|NM_075433|srt-45 ## {Repeats: no}

block2568 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.162	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	8	10	3arm	1	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------GACAAUG------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------TGACAATGAGTTTAATTC--------	18	1
cbriggsae	atgagattttgtcttatctgtttctcataatctctaaagttagctaaatcttgtttcttgagTGACAATGAGTTTAATTCaaaactta
	****************************************************************************************
	--------------------------------------------------------------------------------------------------	NM_071866
	----------------------------------------------------------------------------------------------<<<<	NM_069268
cbriggsae	.((((.(((((..(((.......(((((..((.((.(((..(((........))).))).)).))..)))))..)))..)))))))))	0.480 -13.40

cbriggsae

chromosome:chrIV:4564740:4564827:1

Opposite_strand|Intronic_coding|NM_071866|F39G3.6 ## {Repeats: no}

block2771 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.217	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	19	15	3arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AAUGUUA------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TAATGTTATTTCATGGTAG-------------------	19	1
cbriggsae	gattttctaactgtgaatgctataaaattactgtttcaaaatgtgtctaacaaatttttaaagagccattttttaaTAATGTTATTTCATGGTAGaaattactgtttcaaaatt
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067634
	----------------------------------------------------------------------------------------------------------------------------	NM_001026518
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047596
	----------------------------------------------------------------------------------------------------------------------------	NM_069066
cbriggsae	((((((..(((.((((.((((((.((((.((((((..((((((..(((.............)))..))))))..))))..)).)))).))))))....)))).)))..))))))	0.860 -17.02

cbriggsae

chromosome:chrIV:12687835:12687948:1

Same_strand|Intronic_non-coding|NM_067634|cct-8 ## Opposite_strand|Intronic_coding|NM_001026518|Y105E8A.29 ## {Repeats: no}

block2844 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.524	no	no	0.35/0.35	26/26/0.00	0.0	0.0	1	0	1	0	7	6	5arm	1	nd	0.31	3	1	1	na	na

		reads	miRBase family seed
seed	--------CUAAAAA--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------GCTAAAAATCAGACATCATCTTCTTC--------------------------------------------------------------	26	1
cbriggsae	tcacattGCTAAAAATCAGACATCATCTTCTTCttcttcgaaaatgtgagtagaatttgaatgaatattgagaactgattctttttgaattgtgg
	***********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065289
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	---------------------------------------------------------------------------------------------------------	NM_061965
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	---------------------------------------------------------------------------------------------------------	NM_001024205
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026513
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094113
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001091618
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034557
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	---------------------------------------------------------------------------------------------------------	NM_064619
	---------------------------------------------------------------------------------------------------------	NM_001028390
	---------------------------------------------------------------------------------------------------------	NM_001124458
cbriggsae	.((((.....(((((((((...(((..((((((...(((.............)))...))).)))...)))...)))))).)))......)))).	0.950 -13.72

cbriggsae

chromosome:chrIV:14454860:14454954:1

Same_strand|Intronic_non-coding|NM_065289|Y53G8AR.9 ## Opposite_strand|Intronic_non-coding|NM_061965|F08D12.1 ## {Repeats: no}

block2970 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.270	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	8	27	5arm	2	nd	0.42	3	1	1	na	na

		reads	miRBase family seed
seed	---------AAAUACU-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------AAAATACTGTTGCTCGACT--------------------------------------------------------------------------------------	19	1
cbriggsae	tactgcttAAAATACTGTTGCTCGACTctcttggtgaattcaatgagattcgtgtattttttcagaatattcgtgatatttgtcagcggaagacggacggtgatcagcgtgta
	*****************************************************************************************************************
cbriggsae	(((((((.....(((((((..((...(((.((((..(((...(((((((((.((........)))))).)))))...)))..)))).))).))..)))))))...)))).)))	0.590 -25.30

cbriggsae

chromosome:chrUn:395779:395891:-1

{Repeats: no}

block3357 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.356	no	no	0.33/0.35	18/20/0.50	0.0	1.0	2	0	1	0	5	8	3arm	1	nd	0.35	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------UAACAGC-----------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------------TTAACAGCGTAAATGTAGAG-----	20	1
	--------------------------------------------TTAACAGCGTAAATGTAG-------	18	1
cbriggsae	tctttcatgatatccatatgttaagaaacaagtatattttttaaTTAACAGCGTAAATGTAGAGaaaga
	*********************************************************************
cbriggsae	((((((...((((..((.((((((..((.(((....))).))..))))))..))..))))...))))))	0.880 -8.40

cbriggsae

chromosome:chrUn:362827:362895:1

{Repeats: no}

block3551 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.428	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	7	16	3arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------UUUGCCG------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------CTTTGCCGTCTTTGATTCC-------	19	1
cbriggsae	gttatagaaaaaaacacagtaaacaagaatatattgataacagaaatttaaaattatgataattttgcCTTTGCCGTCTTTGATTCCaataaca
	**********************************************************************************************
cbriggsae	(((((.(((..(((.((.((((((((((.(((..((((..............))))..))).)))))..))))).)).)))..)))..))))).	0.760 -10.04

cbriggsae

chromosome:chrUn:5348417:5348510:1

{Repeats: no}

block3558 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.066	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	24	4	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------AGUAUUC----------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------TAGTATTCTTATAGTCAG------------------------	18	1
cbriggsae	ttcaaaaaaatatttttttttgactggaatttccaaaaatttgcTAGTATTCTTATAGTCAGaaaaacagtttaattttttagaat
	**************************************************************************************
	------------------------------------------------------------------------------------------------	NM_202770
cbriggsae	(((.((((((((((((((((((((((((((...(((....))).....)))))...))))))))))).)))...))))))).))).	0.860 -13.80