miR-Intess™

other hairpins

novel_lenNOK_nonpairedHIGH (29 loci)

block3802 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.188

no

no

0.72/0.72

25/25/0.00

0.0

0.0

1

0

1

0

5

3

3arm

4

nd

0.40

3

1

1

na

na

		reads	miRBase family seed
seed	--------------------------------------------GACCGAG----------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------CGACCGAGCGTCCGTGCCAAGCGCT-----	25	1
cbriggsae	gatggagtgaagggaggagtcctgtgggtgttgctggcaacggCGACCGAGCGTCCGTGCCAAGCGCTacgtc
	*************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	-----------------------------------------------------------------------------------	NM_205579
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011821
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102563
	-----------------------------------------------------------------------------------	NM_001016453
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040230
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072974
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182305
cbriggsae	((((.((((...((.(((....(((....(((((((....)))))))...))))))...))...)))).))))	0.490 -26.90

cbriggsae

chromosome:chrV:10855161:10855233:-1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_205579|myo3a ## Same_strand|Intronic_coding|NM_102563|AT1G27980 ## Opposite_strand|Intronic_non-coding|NM_001016453|spg4 ## {Repeats: no}

block3819 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.943

no

no

0.32/0.32

19/19/0.00

0.0

0.0

1

0

1

0

11

7

3arm

1

nd

0.32

2

1

1

na

na

		reads	miRBase family seed
seed	------------------------------------------------------------AAAUGGG----------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------AAAATGGGTTCTATGTATG-----------	19	1
cbriggsae	cagtgaagatggttatgtttaaaaattgaaactacgtaaggtgactgtgaaaatgttacAAAATGGGTTCTATGTATGctactttttga
	*****************************************************************************************
	---------------------------------------------------------------------------------------------------	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070507
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022613
	---------------------------------------------------------------------------------------------------	NM_007842
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047733
	---------------------------------------------------------------------------------------------------	NM_001298
	---------------------------------------------------------------------------------------------------	NM_001056446
	---------------------------------------------------------------------------------------------------	NM_001066295
	---------------------------------------------------------------------------------------------------	NM_001066297
	---------------------------------------------------------------------------------------------------	NM_137186
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003299
	---------------------------------------------------------------------------------------------------	NM_212567
	---------------------------------------------------------------------------------------------------	NM_001079878
	...................................................................................<<<<<<<<<<<<<<<<	NM_074284
cbriggsae	(((.((((.(((((((((.........(((....(((...(((((.((....)))))))...)))..))).))))).))))))))))).	0.690 -10.60

cbriggsae

chromosome:chrV:11753253:11753341:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_070507|Y105C5B.19 ## Same_strand|Intronic_coding|NM_001022613|SPBC215.13 ## Opposite_strand|Intronic_coding|NM_007842|Dhx9 ## Opposite_strand|UTR_non-coding|NM_074284|T01C3.1 ## {Repeats: no}

block3986 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.899

no

no

0.17/0.17

18/18/0.00

0.0

0.0

1

0

1

0

5

15

5arm

1

nd

0.44

3

1

1

na

na

		reads	miRBase family seed
seed	------AUUUAUG----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----TATTTATGCACAAAAATT------------------------------------------------------------	18	1
cbriggsae	gaatcTATTTATGCACAAAAATTaatattcaaagctgttaacaatagatcgtggctatctgttcgtgtttggtcagggaatcc
	***********************************************************************************
	---------------------------------------------------------------------------------------------	NM_004906
	---------------------------------------------------------------------------------------------	NM_072582
	---------------------------------------------------------------------------------------------	NM_072930
	---------------------------------------------------------------------------------------------	NM_074360
	---------------------------------------------------------------------------------------------	NM_074930
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074847
	---------------------------------------------------------------------------------------------	NM_074581
cbriggsae	((.(((..(((.((((...(((..(((..((...((((.....))))....))..)))..))).)))).)))....))).)).	0.430 -9.80

cbriggsae

chromosome:chrV:2904441:2904523:1

Opposite_strand|Intronic_non-coding|NM_004906|WTAP ## Opposite_strand|Intronic_coding|NM_072582|srh-200 ## Same_strand|Intronic_coding|NM_074847|srh-215 ## {Repeats: no}

block4432 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.305

no

no

0.50/0.50

18/18/0.00

0.0

0.0

1

0

1

0

32

0

3arm

1

nd

0.33

3

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------CACCGGG------------------------------------------	1	miR-35/36/38/39/40/41
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------TCACCGGGTGAAATTCGA--------------------------------	18	1
cbriggsae	gcttctaaaaccatatataatcatatttaatatactgaaaatcatatttttcccatagaattcgcaaagcTCACCGGGTGAAATTCGAtttccactcactgtattttcctgatagatgcc
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_172925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007496
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110231
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110232
	----------------------------------------------------------------------------------------------------------------------------------	NM_001080396
	----------------------------------------------------------------------------------------------------------------------------------	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110229
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110228
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	----------------------------------------------------------------------------------------------------------------------------------	NM_001087789
	----------------------------------------------------------------------------------------------------------------------------------	NM_001079250
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008591
cbriggsae	((.((((.............(((.....((((((.((((((((..(((((.(((...((...........))...))).)))))..)))))....))).))))))....))))))).)).	0.500 -15.31

cbriggsae

chromosome:chrX:5829094:5829213:-1

Opposite_strand|Intronic_non-coding|NM_172925|Klhl31 ## Same_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Opposite_strand|Intronic_coding|NM_007736|Col4a5 ## Same_strand|Intronic_coding|NM_001090075|MGC69046 ## {Repeats: no}

block4437 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.099

no

no

0.32/0.32

19/19/0.00

0.0

0.0

1

0

1

0

25

7

5arm

2

nd

0.37

2

1

1

na

na

		reads	miRBase family seed
seed	--------------------------CUAUGGA---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------ACTATGGAAATAAAGAGCT----------------------------------------------------------------------------	19	1
cbriggsae	cccgcctgaaattttatgataatggACTATGGAAATAAAGAGCTtatcgagaaaacaaattggactgcgaataaggttaatgtttttgttttttcattatatatttaattttcagatcgg
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_172925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007496
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110231
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004119
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110232
	----------------------------------------------------------------------------------------------------------------------------------	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110229
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011058
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006206
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110228
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	----------------------------------------------------------------------------------------------------------------------------------	NM_001087789
	----------------------------------------------------------------------------------------------------------------------------------	NM_001079250
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001020811
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083316
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_077435
cbriggsae	.(((.((((((((..(((((((((((..((..(((((..((.(((((((((.............)).))).)))).))..)))))..))...)))))))).)))..))))).)))..)))	0.990 -23.32

cbriggsae

chromosome:chrX:5876209:5876328:-1

Opposite_strand|Intronic_non-coding|NM_172925|Klhl31 ## Same_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_004119|FLT3 ## Opposite_strand|Intronic_coding|NM_007736|Col4a5 ## {Repeats: no}

block4565 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.663

no

no

0.40/0.40

25/25/0.00

0.0

0.0

1

0

1

0

7

2

3arm

1

nd

0.32

2

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------AAUGCCC------------------------	1	miR-786
		len	cloning frequencies
			AF16
	----------------------------------------------GAATGCCCTTGTCATTAATCGAAGT-------	25	1
cbriggsae	ataatttattttttcatttgaaaataaagtagctctgtgacgctcaGAATGCCCTTGTCATTAATCGAAGTaattgta
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_177736
	----------------------------------------------------------------------------------------	NM_133381
	----------------------------------------------------------------------------------------	NM_001110160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001086847
	----------------------------------------------------------------------------------------	NM_001065160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082087
	----------------------------------------------------------------------------------------	NM_001083653
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067757
cbriggsae	((((((.....((((..((((..((((.(((..((((.......)))).)))..))))..))))..)))).)))))).	0.680 -9.40

cbriggsae

chromosome:chrX:13401731:13401808:-1

Opposite_strand|Intronic_non-coding|NM_177736|Lrrc61 ## Same_strand|Intronic_non-coding|NM_001086847|MGC53595 ## Opposite_strand|Intronic_coding|NM_001065160|Os06g0725900 ## Same_strand|Intronic_coding|NM_001082087|KCNB1 ## {Repeats: no}

block4725 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.997

no

no

0.54/0.54

26/26/0.00

0.0

0.0

1

0

1

0

30

1

3arm

2

nd

0.38

3

1

1

na

na

		reads	miRBase family seed
seed	---------------------------------------------------------------UGCCUUG------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------GTGCCTTGAGCAATGCCTTGGTGTCT------------------------------	26	1
cbriggsae	tacgaaattatgttaccccttggaaccagatctgtgcggctcggaaaacagaatatatccatGTGCCTTGAGCAATGCCTTGGTGTCTcttctgaatacttgaacatcttcctccgtg
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_203923
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001111199
	--------------------------------------------------------------------------------------------------------------------------------	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003666
cbriggsae	((((.....(((((.....((((((..(((((((.((.((((((...(((...........)))...))))))...))..))).)))).)))))).......))))).......))))	0.450 -16.80

cbriggsae

chromosome:chrX:18773014:18773131:-1

Opposite_strand|Intronic_non-coding|NM_203923|abcb4 ## Same_strand|Intronic_non-coding|NM_001111199|zgc:173710 ## Same_strand|Intronic_coding|NM_001003666|Zfp457 ## {Repeats: no}

block4825 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.791

no

no

0.53/0.53

19/19/0.00

0.0

0.0

1

0

1

0

34

5

5arm

1

nd

0.32

3

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------AUUUUGC----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------CATTTTGCATCCGGCGAAC-----------------------------------------------------------------	19	1
cbriggsae	tgtgtgcattgacaatcccgaggacaaccatgccCATTTTGCATCCGGCGAACacacagaagagagaatggacgtacacgccggagaagttggctgctgttcgattggagacgaatat
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001013793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094367
	--------------------------------------------------------------------------------------------------------------------------------	NM_001053012
	--------------------------------------------------------------------------------------------------------------------------------	NM_001073374
cbriggsae	.((((...((..(((((....(((((..((.(((.(((((...(((((((...((.((..........))...))...)))))))))))).))))).))))))))))..))...))))	0.640 -28.20

cbriggsae

chromosome:chrX:2219241:2219358:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001047939|LOC499407 ## Opposite_strand|Intronic_coding|NM_001053012|Os02g0258900 ## {Repeats: no}

block4826 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.899

no

no

0.37/0.37

19/19/0.00

0.0

0.0

1

0

1

0

28

6

5arm

2

nd

0.32

2

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------UUUUUGA----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------GTTTTTGAGTAGTGATGCT-----------------------------------------------------------------	19	1
cbriggsae	tctgaacctccatgattctaaagtttacGTTTTTGAGTAGTGATGCTttccggtccctgaaaaaaataacgttctcgaaattccgtttaaatgtgcccctcgaggagttgag
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001013793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094367
	--------------------------------------------------------------------------------------------------------------------------	NM_001053012
	--------------------------------------------------------------------------------------------------------------------------	NM_001073374
cbriggsae	.((.((.((((.(((.......(((((((.(((((((..((.((..(((.(((...))).)))..)).))...)))))))...)))..)))).......))).)))))).))	0.950 -17.54

cbriggsae

chromosome:chrX:2238185:2238296:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001047939|LOC499407 ## Opposite_strand|Intronic_coding|NM_001053012|Os02g0258900 ## {Repeats: no}

block4890 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.357

no

no

0.32/0.32

19/19/0.00

0.0

0.0

1

0

1

0

22

13

5arm

2

nd

0.37

2

1

1

na

na

		reads	miRBase family seed
seed	-----------------------CUAUGGA----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------ACTATGGAAATAAAGAGCT-----------------------------------------------------------------------------	19	1
cbriggsae	tggtcaaaatttatgatgatggACTATGGAAATAAAGAGCTtatcgagaaaacaaattggtctgcgaataaggttagtcatgtttttgttttttcattatataattaattttcagatc
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_153821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_125756
	--------------------------------------------------------------------------------------------------------------------------------	NM_204793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079593
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169386
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176459
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016575
	--------------------------------------------------------------------------------------------------------------------------------	NM_001085944
cbriggsae	.((((((((((.((.((((((((..((..(((((..((.((((((((((...((...)).))).))).)))).)).....)))))..))...))))))))...)).))))))..))))	0.650 -19.10

cbriggsae

chromosome:chrX:6620951:6621068:1

Opposite_strand|Intronic_non-coding|NM_153821|Prrx1 ## Same_strand|Intronic_coding|NM_125756|HEN3 ## Same_strand|Intronic_non-coding|NM_079593|pros ## {Repeats: no}

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