miR-Intess™

other hairpins

novel_lenNOK_loopOverlap_nonpairedHIGH (17 loci)

block976 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.553

no

no

0.22/0.22

18/18/0.00

0.0

0.0

1

0

1

0

26

-3

3arm_loop

1

nd

0.33

3

1

1

na

na

		reads	miRBase family seed
seed	-------------------------------------------------CAACGAA------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------TCAACGAAACAATTAAAA--------------------------	18	1
cbriggsae	aactttgttctgcttttgtagatacttttgtagttatttttgtagttaTCAACGAAACAATTAAAAaaagaccggtgtctaaagatgaggtt
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	NM_177732
	------------------------------------------------------------------------------------------------------	NM_214509
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_001030843
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101718
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001056446
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064082
cbriggsae	(((((((.(((.......(((((((((((.(((((..((((((........)))))).)))))...)))....)))))))).))))))))))	0.620 -13.80

cbriggsae

chromosome:chrII:7602362:7602453:1

Opposite_strand|Intronic_non-coding|NM_177732|Slc35d1 ## Opposite_strand|Intronic_coding|NM_214509|COLP1alpha ## Same_strand|Intronic_coding|NM_001101718|LOC100009540 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no}

block1295 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.588

no

no

0.28/0.28

18/18/0.00

0.0

0.0

1

0

1

0

24

-3

3arm_loop

1

nd

0.33

2

1

1

na

na

		reads	miRBase family seed
seed	----------------------------------------------------UUGAUUU----------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------GTTGATTTGTGAATTCTA------------------------	18	1
cbriggsae	agccaaaaaaaccatttttcgtcttacactgcgtagctttcactggtttgtGTTGATTTGTGAATTCTAtaggcgtctttgtttgaagtgctg
	*********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065151
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001061149
	-------------------------------------------------------------------------------------------------------	NM_001010845
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212962
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061083
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061083
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063966
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004845
	-------------------------------------------------------------------------------------------------------	NM_061817
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065067
	-------------------------------------------------------------------------------------------------------	NM_064950
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065222
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067633
	-------------------------------------------------------------------------------------------------------	NM_067597
	-------------------------------------------------------------------------------------------------------	NM_181974
cbriggsae	(((.....((((.......(((((........((((..(((((..(((......)))..)))))..))))))))).....)))).....))).	0.790 -16.90

cbriggsae

chromosome:chrIII:1034862:1034954:-1

Same_strand|Intronic_non-coding|NM_065151|W04B5.3 ## Opposite_strand|Intronic_non-coding|NM_001010845|ACSM2A ## Same_strand|Intronic_coding|NM_061083|clec-114 ## {Repeats: no}

block1540 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.413

no

no

0.48/0.48

25/25/0.00

0.0

0.0

1

0

1

0

22

-1

5arm_loop

2

nd

0.32

3

1

1

na

na

		reads	miRBase family seed
seed	-----------------------UUUGGCU-------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------GTTTGGCTTAGGAGAGTGAACCACT--------------------------------------------------------	25	1
cbriggsae	tgtcttctgaagatgatgaggcGTTTGGCTTAGGAGAGTGAACCACTacttgtcctgttgtcctgtcctgaagatcagcgactcgatacttatcgaagatggc
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028998
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028999
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029004
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029003
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029001
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039389
	-----------------------------------------------------------------------------------------------------------------	NM_135472
	-----------------------------------------------------------------------------------------------------------------	NM_164874
	-----------------------------------------------------------------------------------------------------------------	NM_205951
	-----------------------------------------------------------------------------------------------------------------	NM_205952
	-----------------------------------------------------------------------------------------------------------------	NM_205953
	-----------------------------------------------------------------------------------------------------------------	NM_001092606
	-----------------------------------------------------------------------------------------------------------------	NM_001004296
	-----------------------------------------------------------------------------------------------------------------	NM_064155
	-----------------------------------------------------------------------------------------------------------------	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028763
	-----------------------------------------------------------------------------------------------------------------	NM_065922
	-----------------------------------------------------------------------------------------------------------------	NM_010905
	-----------------------------------------------------------------------------------------------------------------	NM_065923
	-----------------------------------------------------------------------------------------------------------------	NM_068002
	-----------------------------------------------------------------------------------------------------------------	NM_067755
	-----------------------------------------------------------------------------------------------------------------	NM_067378
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031045
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102968
cbriggsae	.((((((..(((.((.((((.((.(((((((((((.((.((...((..........))..)))).))))).)).)))))).)))).)))))...))))))...	0.450 -25.80

cbriggsae

chromosome:chrIII:11509675:11509777:-1

Same_strand|Intronic_non-coding|NM_001028998|unc-62 ## Opposite_strand|Intronic_non-coding|NM_135472|nAcRalpha-30D ## Opposite_strand|Intronic_coding|NM_001004296|rdx ## {Repeats: no}

block1542 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.413

no

no

0.48/0.48

25/25/0.00

0.0

0.0

1

0

1

0

22

-1

5arm_loop

2

nd

0.32

3

1

1

na

na

		reads	miRBase family seed
seed	-----------------------UUUGGCU-------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------GTTTGGCTTAGGAGAGTGAACCACT--------------------------------------------------------	25	1
cbriggsae	tgtcttctgaagatgatgaggcGTTTGGCTTAGGAGAGTGAACCACTacttgtcctgttgtcctgtcctgaagatcagcgactcgatacttatcgaagatggc
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028998
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028999
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029004
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029003
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029001
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039389
	-----------------------------------------------------------------------------------------------------------------	NM_135472
	-----------------------------------------------------------------------------------------------------------------	NM_164874
	-----------------------------------------------------------------------------------------------------------------	NM_205951
	-----------------------------------------------------------------------------------------------------------------	NM_205952
	-----------------------------------------------------------------------------------------------------------------	NM_205953
	-----------------------------------------------------------------------------------------------------------------	NM_001092606
	-----------------------------------------------------------------------------------------------------------------	NM_001004296
	-----------------------------------------------------------------------------------------------------------------	NM_064155
	-----------------------------------------------------------------------------------------------------------------	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028763
	-----------------------------------------------------------------------------------------------------------------	NM_065922
	-----------------------------------------------------------------------------------------------------------------	NM_010905
	-----------------------------------------------------------------------------------------------------------------	NM_065923
	-----------------------------------------------------------------------------------------------------------------	NM_068002
	-----------------------------------------------------------------------------------------------------------------	NM_067755
	-----------------------------------------------------------------------------------------------------------------	NM_067378
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031045
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102968
cbriggsae	.((((((..(((.((.((((.((.(((((((((((.((.((...((..........))..)))).))))).)).)))))).)))).)))))...))))))...	0.450 -25.80

cbriggsae

chromosome:chrIII:11517161:11517263:-1

Same_strand|Intronic_non-coding|NM_001028998|unc-62 ## Opposite_strand|Intronic_non-coding|NM_135472|nAcRalpha-30D ## Opposite_strand|Intronic_coding|NM_001004296|rdx ## {Repeats: no}

block1893 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.808

no

no

0.50/0.50

18/18/0.00

0.0

0.0

1

0

1

0

33

-3

3arm_loop

1

nd

0.50

3

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------GUCCAUA-------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------GGTCCATACAGCTGAAAC---------------------------------	18	1
cbriggsae	gacctttatacgtcgttaataagcatgtcaaagaataaggGGTCCATACAGCTGAAACgtgaataaattaattgtaagaatgtgacaaggt
	*******************************************************************************************
	-----------------------------------------------------------------------------------------------------	NM_071218
	-----------------------------------------------------------------------------------------------------	NM_067556
	-----------------------------------------------------------------------------------------------------	NM_001083250
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085890
	-----------------------------------------------------------------------------------------------------	NM_070819
	-----------------------------------------------------------------------------------------------------	NM_002710
cbriggsae	.(((((..((((((((((((...(((((...((..((.((...)).))...))...))))).....)))))).....)).))))..)))))	0.610 -10.60

cbriggsae

chromosome:chrIV:176429:176519:-1

Opposite_strand|Intronic_coding|NM_071218|str-253 ## Opposite_strand|Intronic_non-coding|NM_001083250|rom-4 ## Same_strand|Intronic_non-coding|NM_001085890|MGC52856 ## {Repeats: no}

block2017 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.819

no

no

0.39/0.39

18/18/0.00

0.0

0.0

2

0

1

0

34

-1

5arm_loop

2

nd

0.33

3

2

1

na

na

		reads	miRBase family seed
seed	-----------------------------------UCUCCCA------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------TTCTCCCAATGTACTTTG--------------------------------------------------------	18	2
cbriggsae	tgtcatattgtttttaaaaactttcccaaattagTTCTCCCAATGTACTTTGaaaagtaaaagataaaaaggcattttagaagggtttttttggagcgaaatcgggca
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020714
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060105
	----------------------------------------------------------------------------------------------------------------------	NM_001047451
cbriggsae	.(((...((((((..(((((....(((.......((((...(((((.((((................)))))))))..))))))).)))))..)))))).....))).	0.670 -15.10

cbriggsae

chromosome:chrIV:2690475:2690582:-1

Same_strand|Intronic_non-coding|NM_020714|ZNF490 ## Opposite_strand|Intronic_coding|NM_001047451|C27H2.2 ## {Repeats: no}

block2064 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.320

no

no

0.37/0.37

19/19/0.00

0.0

0.0

1

0

1

0

13

-2

3arm_loop

1

nd

0.32

3

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------ACCGAAA------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------TACCGAAAGGAAGGAATTT-------------	19	1
cbriggsae	tcactatttcgtcttctactgaaattaattcctgggataaTACCGAAAGGAAGGAATTTagattttgtgtga
	************************************************************************
	----------------------------------------------------------------------------------	NM_125682
	----------------------------------------------------------------------------------	NM_001067238
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016802
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012749
cbriggsae	((((.((...((((.......(((((..(((((.((......))...)))))..)))))))))...))))))	0.540 -12.21

cbriggsae

chromosome:chrIV:3539711:3539782:-1

Opposite_strand|Intronic_coding|NM_125682|ARAC10/ATRAC10/ATROP11 ## Same_strand|Intronic_non-coding|NM_016802|Rhoa ## Same_strand|Intronic_coding|NM_012749|Ncl ## {Repeats: no}

block2474 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.784

no

no

0.39/0.39

18/18/0.00

0.0

0.0

2

0

1

0

34

-1

5arm_loop

2

nd

0.33

3

2

1

na

na

		reads	miRBase family seed
seed	-----------------------------------UCUCCCA------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------TTCTCCCAATGTACTTTG--------------------------------------------------------	18	2
cbriggsae	tgtcatattgtctttaaaaactttcccaaattagTTCTCCCAATGTACTTTGaaaggtaaaagataaaaaggcattttagaagggtttttttggagcgaaatcgggca
	************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------	NM_020714
	----------------------------------------------------------------------------------------------------------------------	NM_060105
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047451
cbriggsae	.(((...(((.(((((((((....(((.......((((...(((((.((((................)))))))))..)))))))..)))))))))))).....))).	0.610 -16.40

cbriggsae

chromosome:chrIV:2693632:2693739:1

Opposite_strand|Intronic_non-coding|NM_020714|ZNF490 ## Same_strand|Intronic_coding|NM_001047451|C27H2.2 ## {Repeats: no}

block2664 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.355

no

no

0.26/0.26

19/19/0.00

0.0

0.0

1

0

1

0

9

-4

3arm_loop

1

nd

0.37

3

1

1

na

na

		reads	miRBase family seed
seed	----------------------------------------------UUUAACU--------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------TTTTAACTTTTCTCTGTCT---------	19	1
cbriggsae	tgtttcactgttattttttcagacaaggtttcaaaattgtactacTTTTAACTTTTCTCTGTCTagtagaaca
	*************************************************************************
	-----------------------------------------------------------------------------------	NM_066961
	-----------------------------------------------------------------------------------	NM_064619
cbriggsae	.(((..((((.........((((.((((((...................))))))..))))..))))..))).	0.960 -8.01

cbriggsae

chromosome:chrIV:8616854:8616926:1

Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no}

block2813 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.552

no

no

0.61/0.61

18/23/0.50

0.0

2.5

2

0

1

0

7

-4

3arm_loop

1

nd

0.33

3

2

1

na

na

		reads	miRBase family seed
seed	-----------------------------------AGUCUGC----------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------CAGTCTGCCAGGGATGTG------------	18	1
	----------------------------------CAGTCTGCCAGGGATGTGGAACC-------	23	1
cbriggsae	tattttttggcgccagaatgtagttctttacagaCAGTCTGCCAGGGATGTGGAACCgaacgat
	****************************************************************
	--------------------------------------------------------------------------	NM_064152
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067049
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065151
	--------------------------------------------------------------------------	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106865
	--------------------------------------------------------------------------	NM_072208
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065139
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
	--------------------------------------------------------------------------	NM_067285
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067755
	--------------------------------------------------------------------------	NM_064726
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182297
	--------------------------------------------------------------------------	NM_069121
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067597
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073485
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073512
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073487
	--------------------------------------------------------------------------	NM_000090
	--------------------------------------------------------------------------	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
	--------------------------------------------------------------------------	NM_031163
	--------------------------------------------------------------------------	NM_001027705
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007733
	--------------------------------------------------------------------------	NM_012929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131595
	--------------------------------------------------------------------------	NM_001087220
	--------------------------------------------------------------------------	NM_200495
	--------------------------------------------------------------------------	NM_001081764
	--------------------------------------------------------------------------	NM_001090075
	--------------------------------------------------------------------------	NM_205107
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005153
	--------------------------------------------------------------------------	NM_001087258
	--------------------------------------------------------------------------	NM_198022
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059821
	--------------------------------------------------------------------------	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	--------------------------------------------------------------------------	NM_068122
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	--------------------------------------------------------------------------	NM_027770
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065139
	--------------------------------------------------------------------------	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068002
	--------------------------------------------------------------------------	NM_001087813
	--------------------------------------------------------------------------	NM_001113515
	--------------------------------------------------------------------------	NM_001001135
	--------------------------------------------------------------------------	NM_001130548
cbriggsae	.(((.(((((..(((.......((((((..(((.....)))..)))))).)))..))))).)))	0.690 -12.90

cbriggsae

chromosome:chrIV:13446228:13446291:1

Opposite_strand|Intronic_non-coding|NM_064152|ash-2 ## Same_strand|Intronic_non-coding|NM_067049|Y47D3A.21 ## Opposite_strand|Intronic_coding|NM_072208|K12B6.7 ## Same_strand|Intronic_coding|NM_065139|gip-1 ## {Repeats: no}

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