miR-Intess™

other hairpins

novel_shortStem_nonpairedHIGH_bulgeHIGH (24 loci)

block1366 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.784

no

no

0.50/0.50

20/20/1.00

0.0

0.0

1

0

1

0

4

7

5arm

1

nd

0.40

4

1

1

na

na

		reads	miRBase family seed
seed	-----AAUGAGU---------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----GAATGAGTCGGAGCTGTTCA---------------------------------------------	20	1
cbriggsae	aactGAATGAGTCGGAGCTGTTCAccaatccactgtcgggctcgaacggagcagtcgatgtcaaatggt
	*********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016781
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005609
	-------------------------------------------------------------------------------	NM_001043354
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_111431
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001399
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212504
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007473
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_136816
	-------------------------------------------------------------------------------	NM_001098634
	-------------------------------------------------------------------------------	NM_019027
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131262
	-------------------------------------------------------------------------------	NM_067084
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014761
cbriggsae	...(((....((((..(((((((.....(((......)))........))))))))))).)))......	0.600 -14.52

cbriggsae

chromosome:chrIII:3930189:3930257:-1

Same_strand|Intronic_non-coding|NM_001016781|LOC549535 ## Same_strand|Intronic_coding|NM_001005609|EDA ## Opposite_strand|Intronic_non-coding|NM_001043354|Rorb ## Opposite_strand|Intronic_coding|NM_067084|such-1 ## {Repeats: no}

block1520 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.772

no

no

0.45/0.45

22/22/1.00

0.0

0.0

1

0

1

0

3

11

5arm

8

nd

0.36

4

1

1

na

na

		reads	miRBase family seed
seed	----CCAGCUA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---TCCAGCTAGTGTGTGGTAGAAT--------------------------------------------------	22	1
cbriggsae	aatTCCAGCTAGTGTGTGGTAGAATgctttactcgtctcgatgataattccgtatatctcaaacttgggtaatta
	***************************************************************************
	-------------------------------------------------------------------------------------	NM_001026513
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000209
	-------------------------------------------------------------------------------------	NM_170975
	-------------------------------------------------------------------------------------	NM_001027762
	-------------------------------------------------------------------------------------	NM_007723
	-------------------------------------------------------------------------------------	NM_001011571
	-------------------------------------------------------------------------------------	NM_001056446
	-------------------------------------------------------------------------------------	NM_001027705
	-------------------------------------------------------------------------------------	NM_001029059
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	-------------------------------------------------------------------------------------	NM_013665
	-------------------------------------------------------------------------------------	NM_075505
	-------------------------------------------------------------------------------------	NM_010466
	-------------------------------------------------------------------------------------	NM_068079
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	-------------------------------------------------------------------------------------	NM_065139
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075413
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065455
cbriggsae	((((((....(((.((.((((..(((..(((.((((....)))))))...))).)))).)).)))..)).)))).	0.850 -10.60

cbriggsae

chromosome:chrIII:10509106:10509180:-1

Opposite_strand|Intronic_non-coding|NM_001026513|Y105E8A.24 ## Same_strand|Intronic_non-coding|NM_000209|PDX1 ## Opposite_strand|Intronic_coding|NM_007723|Cnga1 ## {Repeats: no}

block1609 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.246

no

no

0.41/0.41

22/22/1.00

0.0

0.0

1

0

1

0

1

32

5arm

1

nd

0.41

4

1

1

na

na

		reads	miRBase family seed
seed	--UCUUUCA------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-ATCTTTCAACGCCTTCAAGAAC----------------------------------------------------------------------------------	22	1
cbriggsae	cATCTTTCAACGCCTTCAAGAACtccatcccattctggaatgttcgttcgtctcggcaacggtccctcgacgtcttctagaatcggttcttcgccacgatgatgc
	*********************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------	NM_061083
	-------------------------------------------------------------------------------------------------------------------	NM_065151
	-------------------------------------------------------------------------------------------------------------------	NM_001011629
	-------------------------------------------------------------------------------------------------------------------	NM_001061149
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001010845
	-------------------------------------------------------------------------------------------------------------------	NM_212962
	-------------------------------------------------------------------------------------------------------------------	NM_061083
	-------------------------------------------------------------------------------------------------------------------	NM_061083
	-------------------------------------------------------------------------------------------------------------------	NM_063966
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	-------------------------------------------------------------------------------------------------------------------	NM_061817
	-------------------------------------------------------------------------------------------------------------------	NM_065067
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064950
	-------------------------------------------------------------------------------------------------------------------	NM_065222
	-------------------------------------------------------------------------------------------------------------------	NM_068002
	-------------------------------------------------------------------------------------------------------------------	NM_067633
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067597
	-------------------------------------------------------------------------------------------------------------------	NM_001027705
	-------------------------------------------------------------------------------------------------------------------	NM_182229
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065232
cbriggsae	((((..((...((....(((((((.......(((((((((....((.(((..(((....))).....)))))..))))))))).))))))).))...)).)))).	0.850 -22.70

cbriggsae

chromosome:chrIII:1112268:1112372:1

Opposite_strand|Intronic_coding|NM_061083|clec-114 ## Opposite_strand|Intronic_non-coding|NM_065151|W04B5.3 ## Same_strand|Intronic_non-coding|NM_001010845|ACSM2A ## Same_strand|Intronic_coding|NM_065232|F56F11.2 ## {Repeats: no}

block1715 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.680

no

no

0.50/0.50

20/20/1.00

0.0

0.0

1

0

1

0

0

28

5arm

1

nd

0.40

4

1

1

na

na

		reads	miRBase family seed
seed	-ACUGUGA------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GACTGTGAGCAGTATTGGAG------------------------------------------------------------------------------	20	1
cbriggsae	GACTGTGAGCAGTATTGGAGagaaagggagtgatttatcgacggggctgaatgttggatccgctggctgattgtggtaattgtcctccactgtgaagt
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	------------------------------------------------------------------------------------------------------------	NM_001047975
	------------------------------------------------------------------------------------------------------------	NM_001858
	------------------------------------------------------------------------------------------------------------	NM_213264
	------------------------------------------------------------------------------------------------------------	NM_131292
	------------------------------------------------------------------------------------------------------------	NM_080680
	------------------------------------------------------------------------------------------------------------	NM_001845
	------------------------------------------------------------------------------------------------------------	NM_021881
	------------------------------------------------------------------------------------------------------------	NM_007739
	------------------------------------------------------------------------------------------------------------	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083336
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176995
	------------------------------------------------------------------------------------------------------------	NM_001006951
	------------------------------------------------------------------------------------------------------------	NM_001081764
	------------------------------------------------------------------------------------------------------------	NM_001046199
	------------------------------------------------------------------------------------------------------------	NM_001005153
	------------------------------------------------------------------------------------------------------------	NM_001002980
	------------------------------------------------------------------------------------------------------------	NM_001014971
	------------------------------------------------------------------------------------------------------------	NM_204790
	------------------------------------------------------------------------------------------------------------	NM_001082666
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079524
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206442
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206443
	------------------------------------------------------------------------------------------------------------	NM_212528
	------------------------------------------------------------------------------------------------------------	NM_201478
	------------------------------------------------------------------------------------------------------------	NM_182968
	------------------------------------------------------------------------------------------------------------	NM_033150
	------------------------------------------------------------------------------------------------------------	NM_080629
	------------------------------------------------------------------------------------------------------------	NM_000089
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005381
	------------------------------------------------------------------------------------------------------------	NM_001107100
	------------------------------------------------------------------------------------------------------------	NM_000393
	------------------------------------------------------------------------------------------------------------	NM_080681
	------------------------------------------------------------------------------------------------------------	NM_005718
	------------------------------------------------------------------------------------------------------------	NM_004845
	------------------------------------------------------------------------------------------------------------	NM_080680
	------------------------------------------------------------------------------------------------------------	NM_001844
	------------------------------------------------------------------------------------------------------------	NM_080679
	------------------------------------------------------------------------------------------------------------	NM_001854
	------------------------------------------------------------------------------------------------------------	NM_212579
	------------------------------------------------------------------------------------------------------------	NM_080630
	------------------------------------------------------------------------------------------------------------	NM_007736
	------------------------------------------------------------------------------------------------------------	NM_001083844
	------------------------------------------------------------------------------------------------------------	NM_007738
	------------------------------------------------------------------------------------------------------------	NM_031366
	------------------------------------------------------------------------------------------------------------	NM_199214
	------------------------------------------------------------------------------------------------------------	NM_009926
	------------------------------------------------------------------------------------------------------------	NM_031362
	------------------------------------------------------------------------------------------------------------	NM_031365
	------------------------------------------------------------------------------------------------------------	NM_134452
	------------------------------------------------------------------------------------------------------------	NM_000092
	------------------------------------------------------------------------------------------------------------	NM_000091
	------------------------------------------------------------------------------------------------------------	NM_001024960
	------------------------------------------------------------------------------------------------------------	NM_001024959
	------------------------------------------------------------------------------------------------------------	NM_078485
	------------------------------------------------------------------------------------------------------------	NM_001851
	------------------------------------------------------------------------------------------------------------	NM_001079992
	------------------------------------------------------------------------------------------------------------	NM_001130548
	------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001026003
	------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001026002
cbriggsae	.(((....(((((...((((.((........((((..(((.(((..((.......))..))).)))..))))..........)))))))))))..)))	0.640 -19.77

cbriggsae

chromosome:chrIII:6663836:6663933:1

Same_strand|Intronic_coding|NM_001087791|col2a1b ## Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_213264|col9a1 ## Same_strand|Intronic_non-coding|NM_176995|C230078M08Rik ## {Repeats: no}

block2047 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.566

no

no

0.55/0.55

20/20/1.00

0.0

0.0

2

0

1

0

4

2

3arm

1

nd

0.40

4

2

1

na

na

		reads	miRBase family seed
seed	-----------------------------------CGUUUCG----------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------TCGTTTCGGCTCAGATGTGG----	20	2
cbriggsae	tttgtaactttctgactagtgagttaaaaaccatTCGTTTCGGCTCAGATGTGGacaa
	**********************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	--------------------------------------------------------------------	NM_198022
	--------------------------------------------------------------------	NM_020066
	--------------------------------------------------------------------	NM_017323
	--------------------------------------------------------------------	NM_069329
	--------------------------------------------------------------------	NM_011630
cbriggsae	.((((.((..(((((((..(((((........)))))....)).))))).))..))))	0.860 -8.60

cbriggsae

chromosome:chrIV:3230405:3230462:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block2349 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.815

no

no

0.50/0.50

20/20/1.00

0.0

0.0

1

0

1

0

4

32

5arm

1

nd

0.50

4

1

1

na

na

		reads	miRBase family seed
seed	-----UCGCCAG----------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----TTCGCCAGAGTTCAACCAAC----------------------------------------------------------------------------------------	20	1
cbriggsae	ttatTTCGCCAGAGTTCAACCAACataaattcgaataaattctaatttccgtttcacccaatgattattctactttaaattttcgtttttattgatgagttcgaagaagtgg
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071218
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083250
	--------------------------------------------------------------------------------------------------------------------------	NM_001085890
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070819
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002710
cbriggsae	.((((((....((..(((..((..(((((..((((..................(((.....))).................))))..))))))).)))..))...)))))).	0.560 -13.15

cbriggsae

chromosome:chrIV:137424:137535:1

Same_strand|Intronic_coding|NM_071218|str-253 ## Same_strand|Intronic_non-coding|NM_001083250|rom-4 ## Opposite_strand|Intronic_non-coding|NM_001085890|MGC52856 ## {Repeats: no}

block2352 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.307

no

no

0.45/0.45

20/20/1.00

0.0

0.0

1

0

1

0

1

38

3arm

1

nd

0.35

4

1

1

na

na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------------UCGAUAC-------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------------------TTCGATACGAGTACTACCAG-	20	1
cbriggsae	ttttggggaattgcagaaattgaatcaggggaataagctagtaaaattattcggtttcagatacacgttttatgaagtaaagtattatttttctcgaTTCGATACGAGTACTACCAGa
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071218
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067556
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083250
	--------------------------------------------------------------------------------------------------------------------------------	NM_001085890
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070819
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002710
cbriggsae	.(((((.....(((....((((((((((..(((((((((.(((((((...((.......)).....)))))))..)))......))))))..)).))))))))....)))...)))))	0.900 -22.80

cbriggsae

chromosome:chrIV:161609:161726:1

Same_strand|Intronic_coding|NM_071218|str-253 ## Same_strand|Intronic_non-coding|NM_001083250|rom-4 ## Opposite_strand|Intronic_non-coding|NM_001085890|MGC52856 ## {Repeats: no}

block2699 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.415

no

no

0.59/0.59

22/22/1.00

0.0

0.0

1

0

1

0

1

26

5arm

4

nd

0.32

4

1

1

na

na

		reads	miRBase family seed
seed	--GCUAUGA------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-GGCTATGAAGATGCGCTCGAGG----------------------------------------------------------------------------------	22	1
cbriggsae	tGGCTATGAAGATGCGCTCGAGGtgtgggactgacttttttcgagaattcaaaacaatttttgtgtatggaggatgggccaatgacgtgcgcttttcacaaagtt
	*********************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------	NM_001090075
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069271
	-------------------------------------------------------------------------------------------------------------------	NM_001090673
	-------------------------------------------------------------------------------------------------------------------	NM_062819
	-------------------------------------------------------------------------------------------------------------------	NM_001107085
	-------------------------------------------------------------------------------------------------------------------	NM_001004090
cbriggsae	.((((.((((((.((((.((.....(((..(((.(((((..((((((((......)))))))).....))))).))).)))....)).))))))))))...))))	1.000 -24.70

cbriggsae

chromosome:chrIV:9451281:9451385:1

Opposite_strand|Intronic_coding|NM_001090075|MGC69046 ## Same_strand|Intronic_coding|NM_001069271|Os09g0271100 ## Opposite_strand|Intronic_non-coding|NM_062819|fbf-2 ## {Repeats: no}

block2757 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.064

no

no

0.40/0.40

20/20/1.00

0.0

0.0

1

0

1

0

2

15

5arm

1

nd

0.45

4

1

1

na

na

		reads	miRBase family seed
seed	---UUCACUU--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--TTTCACTTGAGTCTTCTTCG--------------------------------------------------------------------	20	1
cbriggsae	atTTTCACTTGAGTCTTCTTCGaaatcaaaattttaatcgaatttttgaaattttggaaaaaaaatctttggaaaatcactcttcgaaaa
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067634
	----------------------------------------------------------------------------------------------------	NM_020180
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_017041
	----------------------------------------------------------------------------------------------------	NM_001025087
	----------------------------------------------------------------------------------------------------	NM_001025088
	----------------------------------------------------------------------------------------------------	NM_001025089
cbriggsae	.(((((....((((....(((.(((((((((((((((........))))))))))))..........))).)))....))))...)))))	0.510 -14.00

cbriggsae

chromosome:chrIV:12477818:12477907:1

Same_strand|Intronic_non-coding|NM_067634|cct-8 ## Opposite_strand|Intronic_non-coding|NM_020180|BRUNOL4 ## {Repeats: no}

block2890 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.706

no

no

0.50/0.50

22/22/1.00

0.0

0.0

1

0

1

0

0

16

5arm

1

nd

0.36

4

1

1

na

na

		reads	miRBase family seed
seed	-UGUGAGA------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GTGTGAGATCGCCAGGAAATTG----------------------------------------------------------	22	1
cbriggsae	GTGTGAGATCGCCAGGAAATTGaagttaggtgcagcagcttattgatttccacgtaacactcttcttctgaatctagcat
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_075117
	------------------------------------------------------------------------------------------	NM_061879
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067650
cbriggsae	((((.((((...(((((....((.((((.(((...(((....))).....))).))))..))...))))).)))).))))	0.540 -14.40

cbriggsae

chromosome:chrIV_random:167706:167785:1

Opposite_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## Same_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## {Repeats: no}

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other hairpins:

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