miR-Intess: classification

other hairpins

block2866 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.327	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	9	13	3arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------UCUUGUU------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------GTCTTGTTCAGCATTCGGTTGAG---------	23	1
cbriggsae	gttgcattgatcagccagttgagtgaatgaatggaatttttttgataaggctttgacaatattcttctttttatcGTCTTGTTCAGCATTCGGTTGAGaaagccaca
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075117
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061879
	---------------------------------------------------------------------------------------------------------------------	NM_067650
cbriggsae	((.((.((..((((((........(((((....((((.....((((((((....((......))....))))))))....))))..)))))))))))..)))).)).	0.810 -21.70

cbriggsae

chromosome:chrIV_random:166060:166166:-1

Same_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## Opposite_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## {Repeats: no}

block3242 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.753	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	8	13	5arm	7	nd	0.38	4	2	1	na	na

		reads	miRBase family seed
seed	---------CUUACGA--------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------GCTTACGACCATATCACGTTG-------------------------------------------------------------	21	2
cbriggsae	catgtgatGCTTACGACCATATCACGTTGaatgcacgccatcccgtccgatctggcaagttaagcaacgttgagtccagttagtacttgg
	******************************************************************************************
cbriggsae	((.(((..(((...(((((....((((((...((..((((((......))..))))..))....)))))))).))).)))...))).)).	0.970 -18.40

cbriggsae

chromosome:chrUn:4856988:4857077:-1

{Repeats: no}

novel_lenNOK (32 loci)

block57 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.106	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	7	14	3arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------CGAUGUG------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------ACGATGTGTGGAGGCCATT-------	19	1
cbriggsae	tcttagtgatgcgtcgtggaaaacatttgtgaattttagaatgcaaaatagcattgaaaaatatACGATGTGTGGAGGCCATTtaacaga
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174569
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174283
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002035
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177366
	----------------------------------------------------------------------------------------------------	NM_001107428
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053878
	----------------------------------------------------------------------------------------------------	NM_008665
cbriggsae	(((....((((.(((.......(((((((((.(((((..(((((......)))))..))))).))))).))))...)))))))....)))	0.930 -18.00

cbriggsae

chromosome:chrI:2073391:2073480:-1

Same_strand|Intronic_non-coding|NM_174569|PABPN1 ## Opposite_strand|Intronic_non-coding|NM_001107428|Zfp612 ## Same_strand|Intronic_coding|NM_053878|Cplx2 ## Opposite_strand|Intronic_coding|NM_008665|Myt1 ## {Repeats: no}

block156 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.444	no	no	0.46/0.46	26/26/0.00	0.0	0.0	2	0	1	0	23	1	5arm	1	nd	0.23	2	2	1	na	na

		reads	miRBase family seed
seed	------------------------AUUUGUC---------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-----------------------GATTTGTCGAGCTTGCCTTTGGAATG---------------------------------------------------------------	26	2
cbriggsae	tagggaatattaaattttaggatGATTTGTCGAGCTTGCCTTTGGAATGtggaaggacggtcggtggcgaagttcatcaggagacgttgtgattgaattggaatttacttgg
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_008855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176035
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205985
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205986
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001084127
	--------------------------------------------------------------------------------------------------------------------------	NM_068405
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001009899
	...........................................................................................................<<<<<<<<<<<<<<<	NM_059573
cbriggsae	((((((((.((((...(((.((((.((((..(((((((((.((((..(((......))).)))).))).))))))..))))...)))).))).....)))).)))).)))).	0.800 -19.80

cbriggsae

chromosome:chrI:8116870:8116981:-1

Opposite_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Same_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Opposite_strand|Intronic_coding|NM_068405|ZK616.7 ## Same_strand|Intronic_non-coding|NM_001009899|KIAA2018 ## {Repeats: no}

block269 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.024	no	no	0.64/0.64	25/25/0.00	0.0	0.0	4	0	1	0	19	5	5arm	1	nd	0.24	2	4	1	na	na

		reads	miRBase family seed
seed	--------------------UACGCCA--------------------------------------------------------------------------------	4	novel
		len	cloning frequencies
			AF16
	-------------------GTACGCCAACGTCGACGGAACTCGG---------------------------------------------------------------	25	4
cbriggsae	aaaaattgacactttgttcGTACGCCAACGTCGACGGAACTCGGagagcattgcgacattccaggtttcgttgattgcctgaaagtatggaaatttaatgcaatttt
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	NM_057259
	---------------------------------------------------------------------------------------------------------------------	NM_008855
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061553
	---------------------------------------------------------------------------------------------------------------------	NM_068079
cbriggsae	.(((((((........(((((((..((..(((((((((((..((((.((...))....))))..)))))))))))....))...))))))).........)))))))	1.000 -29.33

cbriggsae

chromosome:chrI:1652966:1653072:1

Opposite_strand|Intronic_non-coding|NM_057259|l(2)37Cc ## Same_strand|Intronic_non-coding|NM_061553|C13A10.1 ## {Repeats: no}

block326 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.042	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	6	9	5arm	1	nd	0.28	2	1	1	na	na

		reads	miRBase family seed
seed	-------CUUGUUG------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------GCTTGTTGATTGCTGTAT--------------------------------------------------	18	1
cbriggsae	gtttgaGCTTGTTGATTGCTGTATaaagattccaaaaggaatttttgatgctcgtttttattcatgcgcttgcg
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_013927
cbriggsae	((....((.((.(((..((.(((((((((((((....)))))))))).)))..))..)))..)).))....)).	0.980 -17.10

cbriggsae

chromosome:chrI:5791030:5791103:1

Same_strand|Intronic_non-coding|NM_013927|Cngb3 ## {Repeats: no}

block358 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.565	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	7	30	5arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	--------AGUAAAC---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------TAGTAAACCATTTTTGTCG----------------------------------------------------------------------------------------------	19	1
cbriggsae	gaattagTAGTAAACCATTTTTGTCGaaaatattattctttccctggtttcagggttaaaactcacaaaccgtaaaacctaatgtaatacagaaaagcggttctcacttatctcggttct
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	----------------------------------------------------------------------------------------------------------------------------------	NM_176035
	----------------------------------------------------------------------------------------------------------------------------------	NM_205985
	----------------------------------------------------------------------------------------------------------------------------------	NM_205986
	----------------------------------------------------------------------------------------------------------------------------------	NM_102365
	----------------------------------------------------------------------------------------------------------------------------------	NM_001084127
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068405
	----------------------------------------------------------------------------------------------------------------------------------	NM_001009899
cbriggsae	(((((((.(((.((((.(((((((.....((((((.........((((((..((((....))))..)))))).......))))))...)))))))...))))...)))...)).))))).	0.490 -17.09

cbriggsae

chromosome:chrI:8153368:8153487:1

Same_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Opposite_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Same_strand|Intronic_coding|NM_068405|ZK616.7 ## Opposite_strand|Intronic_non-coding|NM_001009899|KIAA2018 ## {Repeats: no}

block386 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.522	no	no	0.53/0.53	19/19/0.00	0.0	0.0	2	0	1	0	16	12	5arm	1	nd	0.26	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------AAUCCGG----------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------GAATCCGGGGATCTTCTGT-----------------------------------------------------------------	19	2
cbriggsae	gtccaccgtcaattctGAATCCGGGGATCTTCTGTcttcagcgtcgatgaatcgatttaggagagattttcgagagcttcctgtcttcttggtcatggag
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106587
	--------------------------------------------------------------------------------------------------------------	NM_061648
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060440
	--------------------------------------------------------------------------------------------------------------	NM_059352
	--------------------------------------------------------------------------------------------------------------	NM_059351
cbriggsae	.((((...((((....(((..((((((.((..(((((((...(((((....)))))...)))))......))..)).))))))..)))))))...)))).	0.410 -23.20

cbriggsae

chromosome:chrI:9023812:9023911:1

Same_strand|Intronic_non-coding|NM_001106587|Tnpo3 ## Opposite_strand|Intronic_coding|NM_061648|sdz-18 ## Same_strand|Intronic_coding|NM_060440|srt-62 ## {Repeats: no}

block395 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.868	no	no	0.33/0.33	18/18/0.00	0.0	0.0	2	0	1	0	10	10	5arm	1	nd	0.28	2	2	1	na	na

		reads	miRBase family seed
seed	-----------UUAUAGA--------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------TTTATAGAACGGGTTTAG----------------------------------------------	18	2
cbriggsae	aacattacaaTTTATAGAACGGGTTTAGaatttcaagggggactccggtcaaattttctattgcattaaaatgt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175441
cbriggsae	.(((((..(((..((((((..(((((.((.......((....))....)))))))))))))...)))..)))))	0.780 -8.20

cbriggsae

chromosome:chrI:9457242:9457315:1

Opposite_strand|Intronic_non-coding|NM_001030661|SETD1B ## Same_strand|Intronic_coding|NM_067080|Y66D12A.21 ## Same_strand|Intronic_non-coding|NM_175441|Mylk3 ## {Repeats: no}

block607 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.213	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	9	1	5arm	1	nd	0.28	3	1	1	na	na

		reads	miRBase family seed
seed	----------GAUCAGC----------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------GGATCAGCAAGTCAGCGT------------------------------------	18	1
cbriggsae	gtctaaaccGGATCAGCAAGTCAGCGTgaagctcgaactgaacttgaacattcttgatgggct
	***************************************************************
	-------------------------------------------------------------------------	NM_012623
	-------------------------------------------------------------------------	NM_079000
	-------------------------------------------------------------------------	NM_057483
	-------------------------------------------------------------------------	NM_139783
	-------------------------------------------------------------------------	NM_001052679
	-------------------------------------------------------------------------	NM_102295
	-------------------------------------------------------------------------	NM_208702
	-------------------------------------------------------------------------	NM_141636
	-------------------------------------------------------------------------	NM_102566
	-------------------------------------------------------------------------	NM_133401
	-------------------------------------------------------------------------	NM_011076
	-------------------------------------------------------------------------	NM_011075
	-------------------------------------------------------------------------	NM_000927
	-------------------------------------------------------------------------	NM_001085278
cbriggsae	(((((....((((...((((((((..((.....))..)))).))))...))))....))))).	0.990 -15.00