miR-Intess: classification

other hairpins

block906 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.835	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	22	6	5arm	1	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------UAGCCAU------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------GTAGCCATTGCTCTCCCGC-------------------------------------------------------------------------------	19	1
cbriggsae	cgcgcagcgtcctttgattacgGTAGCCATTGCTCTCCCGCatatgtcacaatatccacattgccaatcccaaaggtgagcatcggctttgacgtggcgttcatcccggggcaggaagcg
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_006287
	----------------------------------------------------------------------------------------------------------------------------------	NM_009829
	----------------------------------------------------------------------------------------------------------------------------------	NM_001039276
	----------------------------------------------------------------------------------------------------------------------------------	NM_201578
	----------------------------------------------------------------------------------------------------------------------------------	NM_001114006
cbriggsae	(((.....(((((.((((((((..((((..(((((.((.(((.((((..........)))))))..........)).)))))..))))....)))))...)))....))))).....)))	0.640 -31.40

cbriggsae

chromosome:chrII:4387563:4387682:1

Opposite_strand|Intronic_non-coding|NM_006287|TFPI ## Opposite_strand|Intronic_coding|NM_201578|psmd12 ## {Repeats: no}

block1030 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.088	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	1	0	14	26	3arm	1	nd	0.16	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AACACCG-------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------TAACACCGGCAGCTGGAGT--------------	19	2
cbriggsae	gcacgagaaggtgtagcagcagcggttggtgtttcaacagcacttggttgtcgagtggcaactggagttcgtggttgtccgaTAACACCGGCAGCTGGAGTtgggagaactggtg
	*******************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------------	NM_001038232
	-----------------------------------------------------------------------------------------------------------------------------	NM_062121
	-----------------------------------------------------------------------------------------------------------------------------	NM_061791
	-----------------------------------------------------------------------------------------------------------------------------	NM_001038233
	-----------------------------------------------------------------------------------------------------------------------------	NM_061723
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123511
	----------------------------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<	NM_064193
	----------------------------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001129193
cbriggsae	.(((.((......((((..((((.(((((((((((.((((((((((((((((....)))))))).))).....)))))..)).))))))))).))))..))))......)).)))	0.790 -37.80

cbriggsae

chromosome:chrII:11232401:11232515:1

Opposite_strand|Intronic_coding|NM_001038232|bath-20 ## Same_strand|Intronic_non-coding|NM_001123511|rab7 ## Opposite_strand|Boundary_coding|NM_064193|pqn-87 ## {Repeats: no}

block1192 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.179	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	5	32	5arm	1	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	------AUCUCCG---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----TATCTCCGGTTTTTGAAA-----------------------------------------------------------------------------------------------	18	1
cbriggsae	ggtttTATCTCCGGTTTTTGAAAaaaccgttgttaaagtgcttcctgaacagctctcatctgacatgaattggcggagcgttggcagcacagttttttcgattaactcctgggtatcc
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001012230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062218
cbriggsae	((...(((((..((((.((((((((((.((((((((...(((((((((.((..((......))..))..)))).))))).))))))))...))))))))))..))))...))))).))	0.930 -29.90

cbriggsae

chromosome:chrII_random:2210258:2210375:-1

Same_strand|Intronic_non-coding|NM_001012230|Xkrx ## Same_strand|Intronic_coding|NM_062218|srx-105 ## {Repeats: no}

block1298 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.726	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	12	20	3arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUGACAC-----------------------	1	miR-64
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------CATGACACTGAAGCGGGAT------------	19	1
cbriggsae	gcgtccgaggaggtgtcgccggaggtgtcgccaatctcatggagctgagcattctcttcaaatcttccagaaggacCATGACACTGAAGCGGGATtggaccggtcgc
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061083
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065151
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212962
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061083
	---------------------------------------------------------------------------------------------------------------------	NM_061817
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065067
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067633
	---------------------------------------------------------------------------------------------------------------------	NM_067597
	---------------------------------------------------------------------------------------------------------------------	NM_102069
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003107
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027705
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_019674
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027238
	---------------------------------------------------------------------------------------------------------------------	NM_001018756
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082323
	---------------------------------------------------------------------------------------------------------------------	NM_075459
	---------------------------------------------------------------------------------------------------------------------	NM_003972
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026490
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075132
	---------------------------------------------------------------------------------------------------------------------	NM_075283
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070558
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064510
	---------------------------------------------------------------------------------------------------------------------	NM_075402
	---------------------------------------------------------------------------------------------------------------------	NM_065104
	---------------------------------------------------------------------------------------------------------------------	NM_065222
	---------------------------------------------------------------------------------------------------------------------	NM_075409
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182229
cbriggsae	(((.(((....(((.((((....(((((((....(((..(((((.((((.......))))....)))))..)))....)))))))...)))).)))....))).)))	0.600 -31.90

cbriggsae

chromosome:chrIII:1274841:1274947:-1

Same_strand|Intronic_coding|NM_061083|clec-114 ## Same_strand|Intronic_non-coding|NM_065151|W04B5.3 ## Opposite_strand|Intronic_non-coding|NM_061817|cct-3 ## Opposite_strand|Intronic_coding|NM_001018756|fft1 ## {Repeats: no}

block1694 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.472	no	no	0.44/0.44	25/25/0.00	0.0	0.0	1	0	1	0	7	4	3arm	1	nd	0.28	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------AUAAGAA------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------GATAAGAAAGCTCAAGGAGCTTAGC-------	25	1
cbriggsae	gtaggtttctaagtttttgatgccgttgttggtcgttgatttccccgttGATAAGAAAGCTCAAGGAGCTTAGCatatctg
	*********************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066813
	-------------------------------------------------------------------------------------------	NM_127796
	-------------------------------------------------------------------------------------------	NM_134696
	-------------------------------------------------------------------------------------------	NM_134696
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001077541
	-------------------------------------------------------------------------------------------	NM_018785
	-------------------------------------------------------------------------------------------	NM_012760
	-------------------------------------------------------------------------------------------	NM_026275
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082235
cbriggsae	.(((((..((((((((((((.((..((....((((.((.......)).))))..))..))))))).)))))))...)))))	0.820 -17.00

cbriggsae

chromosome:chrIII:5108909:5108989:1

Same_strand|Intronic_non-coding|NM_066813|R10E12.2 ## Opposite_strand|Intronic_non-coding|NM_127796|ATUBP4 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Same_strand|Intronic_coding|NM_001077541|clgn ## {Repeats: no}

block1935 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.043	no	no	0.39/0.39	18/18/0.00	0.0	0.0	3	0	1	0	8	1	3arm	1	nd	0.22	2	3	1	na	na

		reads	miRBase family seed
seed	---------------------------------------AACGAGU------------------	3	novel
		len	cloning frequencies
			AF16
	--------------------------------------TAACGAGTTTGCATCTTC--------	18	3
cbriggsae	atttcttgataaattttgataaaatttgatgtttctaaTAACGAGTTTGCATCTTCaaggaata
	****************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182297
	--------------------------------------------------------------------------	NM_005650
	--------------------------------------------------------------------------	NM_181492
cbriggsae	(((((((((........(((.(((((((.(((.....))).)))))))..))).))))))))).	0.470 -11.70

cbriggsae

chromosome:chrIV:1267247:1267310:-1

Same_strand|Intronic_non-coding|NM_182297|B0546.4 ## Opposite_strand|Intronic_non-coding|NM_005650|TCF20 ## {Repeats: no}

block2032 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.291	no	no	0.40/0.40	25/25/0.00	0.0	0.0	1	0	1	0	5	19	3arm	1	nd	0.28	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------AUUGGAA----------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------GATTGGAACGACAACTGATAATGCT-----	25	1
cbriggsae	ttttcagtttttttagttgcaaattttcaaaatctaccgtaatttttgttggcgtttttgatgaacaaatggtaataagtagaatGATTGGAACGACAACTGATAATGCTagaaa
	*******************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------------	NM_001047555
	-----------------------------------------------------------------------------------------------------------------------------	NM_001047554
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068260
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068267
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068270
cbriggsae	.(((((((.((.(((((((.....((((((..(((((........((((((.(((((.........))))).)))))))))))....))))))...))))))).)).))).))))	0.990 -19.70

cbriggsae

chromosome:chrIV:2934861:2934975:-1

Opposite_strand|Intronic_coding|NM_001047555|str-174 ## Same_strand|Intronic_coding|NM_068260|str-175 ## {Repeats: no}

block2162 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.134	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	23	10	3arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------UUUUAGG----------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------ATTTTAGGCACATGTGAAG-----------------------	19	1
cbriggsae	tatgaaaaagttgccaagttaagcgttgttcaacccgtggcgatgaatgggttggtagtggataattatgaaacATTTTAGGCACATGTGAAGaaaaattaaaggtactgtacata
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007735
	------------------------------------------------------------------------------------------------------------------------------	NM_001003090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063086
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062161
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	------------------------------------------------------------------------------------------------------------------------------	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201478
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093327
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097192
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	------------------------------------------------------------------------------------------------------------------------------	NM_174520
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095759
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105289
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	------------------------------------------------------------------------------------------------------------------------------	NM_001011005
	------------------------------------------------------------------------------------------------------------------------------	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027770
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064264
	------------------------------------------------------------------------------------------------------------------------------	NM_033150
	------------------------------------------------------------------------------------------------------------------------------	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028266
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214466
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067504
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	------------------------------------------------------------------------------------------------------------------------------	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037865
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171020
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037763
cbriggsae	((((....((.((((...((((...((.((((...((((((...(((((..((.(((((.....))))).)).)))))...)).)))))))).))...)))).))))))...))))	0.790 -23.40

cbriggsae

chromosome:chrIV:7439847:7439962:-1

Same_strand|Intronic_coding|NM_007735|Col4a4 ## Opposite_strand|Intronic_coding|NM_001003090|COL1A1 ## Same_strand|Intronic_non-coding|NM_171020|dyf-13 ## {Repeats: no}

block2191 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.095	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	28	5	3arm	1	nd	0.26	1	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------ACAAAAC---------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------TACAAAACTCAGTCCATAT----------------------------	19	1
cbriggsae	gcaaatagtaatttttctgtttcatgaggttctgaattttgaccagcttttttctcagagtTACAAAACTCAGTCCATATagaaaccttctcgaaaaattgaaaagtg
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066961
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064619
cbriggsae	.((.....(((((((((.((((((((.((..((((.(((((...((((((......)))))).))))).)))).)).))).)))))......))))))))).....))	0.920 -20.80

cbriggsae

chromosome:chrIV:8705069:8705176:-1

Same_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no}

block2218 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.383	no	no	0.39/0.39	18/18/0.00	0.0	0.0	3	0	1	0	12	0	3arm	1	10	0.22	3	3	1	na	na

		reads	miRBase family seed
seed	----------------------------------UCGAAUU----------------------	3	novel
		len	cloning frequencies
			AF16
	---------------------------------TTCGAATTCTGAGTGTAC------------	18	3
cbriggsae	tttgtgaaatttgatttacgaatctgaaaacgtTTCGAATTCTGAGTGTACaaaattccagga
	***************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009313
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	-------------------------------------------------------------------------	NM_001069271
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090673
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001107085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>	NM_069310
cbriggsae	((((.(((.(((((((((.((((.((((.....)))).)))))))))...)))).))))))).	0.970 -9.50

cbriggsae

chromosome:chrIV:9304568:9304630:-1

Same_strand|Intronic_non-coding|NM_009313|Tacr1 ## Same_strand|Intronic_coding|NM_001090075|MGC69046 ## Opposite_strand|Intronic_coding|NM_001069271|Os09g0271100 ## {Repeats: no}

Page 23

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Page 70

miR-Intess™

block906 [novel_lenNOK]

block1030 [novel_lenNOK]

block1192 [novel_lenNOK]

block1298 [novel_lenNOK]

block1694 [novel_lenNOK]

block1935 [novel_lenNOK]

block2032 [novel_lenNOK]

block2162 [novel_lenNOK]

block2191 [novel_lenNOK]

block2218 [novel_lenNOK]