other hairpins
block2426 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.037 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 22 | 3 | 3arm | 1 | nd | 0.21 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------AAGUCCG--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------TAAGTCCGGGACATCGTTC---------------------- | 19 | 1 | |
| cbriggsae | atttcttctgtttctcgaatgtgtcgaatgaacattattgaaagaatatgcagTAAGTCCGGGACATCGTTCaagataaaataacaaagaaata | ||
| ********************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------- | NM_070351 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001090906 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_182271 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001102902 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_113688 | ||
| cbriggsae | (((((((.(((((((.(((((((((...((.((.((((((..........)))))))).)).)))).))))).)))......))))))))))). | 1.000 -19.60 |
| cbriggsae | chromosome:chrIV:1974750:1974843:1 | Opposite_strand|Intronic_non-coding|NM_070351|LLC1.2 ## Same_strand|Intronic_non-coding|NM_001090906|EEF1D ## Same_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no} |
block2900 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.180 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 30 | 5 | 3arm | 1 | nd | 0.26 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------AUUGCUU----------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------TATTGCTTCACCTGTTTTG------------------------------ | 19 | 1 | |
| cbriggsae | gaaaaaagttttcctgtttcaaaatgtttacaattttggatagtaattatgataatagtTATTGCTTCACCTGTTTTGaatcaatttggttttcattttttttttttg | ||
| ************************************************************************************************************ | |||
| cbriggsae | ((((((((..........(((((.((((((.(((..((((((((((((((....)))))))))).))))...))).)))).)).)))))..........)))))))). | 0.460 -16.25 |
| cbriggsae | chromosome:chrIV_random:437709:437816:1 | {Repeats: no} |
block2940 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.335 | no | no | 0.24/0.24 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 13 | 3arm | 3 | 9 | 0.24 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------GUAACAU---------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------------------------TGTAACATTGTGATGAAGATTTATT----------- | 25 | 1 | |
| cbriggsae | acttactatgttgttagtcattttcattatgttttaagactaggtgcagtttttggtatttttacaggTGTAACATTGTGATGAAGATTTATTacagggtatgt | ||
| ******************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001097928 | ||
| cbriggsae | ((.((((.(((.((.((((.((.((((.(((((.((.....((((((........)))))).......)).))))).)))).)).)))).)).))).)))).)) | 0.450 -17.90 |
| cbriggsae | chromosome:chrM:4795:4898:-1 | Same_strand|Intronic_non-coding|NM_001097928|LOC100049086 ## {Repeats: no} |
block3083 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.426 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 21 | 4 | 5arm | 2 | nd | 0.26 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------UGAGGUU-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------GTGAGGTTTGCGGTCTTCA--------------------------------------------------------- | 19 | 1 | |
| cbriggsae | ctcttcctttgcttgcattttGTGAGGTTTGCGGTCTTCAgttagagagataacctagaattgtaaaattatcgatgtgcttctgtaaactgcgagt | ||
| ************************************************************************************************* | |||
| cbriggsae | (((....(((((..((((.((((((..((((((((((...((((......))))..))).))))))).))).))).))))....)))))....))). | 0.890 -19.60 |
| cbriggsae | chromosome:chrUn:3814009:3814105:-1 | {Repeats: no} |
block3111 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.335 | no | no | 0.24/0.24 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 13 | 3arm | 3 | 9 | 0.24 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------GUAACAU---------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------------------------TGTAACATTGTGATGAAGATTTATT----------- | 25 | 1 | |
| cbriggsae | acttactatgttgttagtcattttcattatgttttaagactaggtgcagtttttggtatttttacaggTGTAACATTGTGATGAAGATTTATTacagggtatgt | ||
| ******************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001097928 | ||
| cbriggsae | ((.((((.(((.((.((((.((.((((.(((((.((.....((((((........)))))).......)).))))).)))).)).)))).)).))).)))).)) | 0.450 -17.90 |
| cbriggsae | chromosome:chrUn:4218858:4218961:-1 | Same_strand|Intronic_non-coding|NM_001097928|LOC100049086 ## {Repeats: no} |
block3420 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.42/0.42 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 15 | 6 | 3arm | 1 | nd | 0.27 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------AUUAUUC--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------GATTATTCGGACTGATCACAAGGCTT--------------- | 26 | 1 | |
| cbriggsae | gaatcaacggtcacataaacgtcttgcttctttcctgagttattcttcaattgcacttgtagggGATTATTCGGACTGATCACAAGGCTTtgtggagtgatttca | ||
| ********************************************************************************************************* | |||
| cbriggsae | ((((((....((.((((((.((((((..((..(((.((((...(((((...(((....))))))))..)))))))..))...)))))))))))))).)))))).. | 1.000 -27.50 |
| cbriggsae | chromosome:chrUn:2275502:2275606:1 | {Repeats: no} |
block3481 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.335 | no | no | 0.24/0.24 | 25/25/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 13 | 3arm | 3 | 9 | 0.24 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------GUAACAU---------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------------------------TGTAACATTGTGATGAAGATTTATT----------- | 25 | 1 | |
| cbriggsae | acttactatgttgttagtcattttcattatgttttaagactaggtgcagtttttggtatttttacaggTGTAACATTGTGATGAAGATTTATTacagggtatgt | ||
| ******************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001097928 | ||
| cbriggsae | ((.((((.(((.((.((((.((.((((.(((((.((.....((((((........)))))).......)).))))).)))).)).)))).)).))).)))).)) | 0.450 -17.90 |
| cbriggsae | chromosome:chrUn:4250274:4250377:1 | Same_strand|Intronic_non-coding|NM_001097928|LOC100049086 ## {Repeats: no} |
block3625 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.426 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 21 | 4 | 5arm | 2 | nd | 0.26 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------UGAGGUU-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------GTGAGGTTTGCGGTCTTCA--------------------------------------------------------- | 19 | 1 | |
| cbriggsae | ctcttcctttgcttgcattttGTGAGGTTTGCGGTCTTCAgttagagagataacctagaattgtaaaattatcgatgtgcttctgtaaactgcgagt | ||
| ************************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------------------- | NM_001028815 | ||
| ----------------------------------------------------------------------------------------------------------- | NM_170227 | ||
| ----------------------------------------------------------------------------------------------------------- | NM_001114052 | ||
| cbriggsae | (((....(((((..((((.((((((..((((((((((...((((......))))..))).))))))).))).))).))))....)))))....))). | 0.890 -19.60 |
| cbriggsae | chromosome:chrV:746687:746783:-1 | Opposite_strand|Intronic_coding|NM_001028815|F56H9.6 ## {Repeats: no} |
block3960 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.61/0.61 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 14 | 15 | 3arm | 1 | nd | 0.17 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------UUCAGAG------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------ATTCAGAGTGGCGCCTGC-------------- | 18 | 1 | |
| cbriggsae | gtggcgaagctcctgcagattctcgccattgtaggaggccatcgttttcaggaagagacgcttggaagaATTCAGAGTGGCGCCTGCacggttgagccaca | ||
| ***************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001087019 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_075285 | ||
| --------------------------------------------------------------------------------------------------------------- | NM_071395 | ||
| --------------------------------------------------------------------------------------------------------------- | NM_071402 | ||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------------------------------------- | NM_065376 | ||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------------------------------------- | NM_068110 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001123561 | ||
| cbriggsae | (((((..((((..(((((.....(((((((....(((.(((.((((((......))))))..))).....)))..))))))).))))).))))..))))). | 0.880 -36.60 |
| cbriggsae | chromosome:chrV:1552667:1552767:1 | Same_strand|Intronic_non-coding|NM_001087019|nr2f2 ## Same_strand|Intronic_coding|NM_075285|nhr-243 ## Opposite_strand|Intronic_coding|NM_071395|srh-247 ## {Repeats: no} |
block3972 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.437 | no | no | 0.62/0.63 | 19/21/0.50 | 0.0 | 1.0 | 2 | 0 | 1 | 0 | 10 | 33 | 5arm | 1 | nd | 0.29 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------UUCCGAG------------------------------------------------------------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------GTTCCGAGCTCGACGCTGA------------------------------------------------------------------------------------------- | 19 | 1 | |
| ----------GTTCCGAGCTCGACGCTGAGA----------------------------------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | gtttccagatGTTCCGAGCTCGACGCTGAGAttgagaaaaaaaaaaaaaaaaaacatccagataaattatgtgattgatagttccaatttccaattgttgaataattggtttattgaaaa | ||
| ************************************************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_071934 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001087019 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001030396 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001001233 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001039279 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_132582 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001027854 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_018693 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_132246 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_025133 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_026988 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_012167 | ||
| cbriggsae | .((((..((((..((((..((((((..(((((((.(((................((..((.(((...))).))..))....))))))))))....))))))....))))..)))))))). | 0.770 -17.95 |
| cbriggsae | chromosome:chrV:1998048:1998167:1 | Opposite_strand|Intronic_non-coding|NM_071934|tam-1 ## Same_strand|Intronic_non-coding|NM_001087019|nr2f2 ## Opposite_strand|Intronic_coding|NM_001030396|MGC69373 ## Same_strand|Intronic_coding|NM_001027854|grl-25 ## {Repeats: no} |
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