other hairpins
block4434 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | 10 | 3arm | 1 | nd | 0.05 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------GACAAGG------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------------------AGACAAGGGTGATGGTCGC------------- | 19 | 1 | |
| cbriggsae | gagtttcttgatggtgacttggagtccttctttgtcctttggtggagcgttgtcctgttggaAGACAAGGGTGATGGTCGCcatgtccggctca | ||
| ********************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------- | NM_172925 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007496 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001110231 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_004119 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001110232 | ||
| -------------------------------------------------------------------------------------------------------- | NM_007736 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001110229 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_011058 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_006206 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_010160 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001110228 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001110230 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001090075 | ||
| -------------------------------------------------------------------------------------------------------- | NM_001087789 | ||
| -------------------------------------------------------------------------------------------------------- | NM_001079250 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001020811 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001083316 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_077435 | ||
| cbriggsae | (((((.....(((((((((....(((..((((((((.((..(((((......))).))..)).)))))))).))))))))))))....))))). | 0.680 -30.80 |
| cbriggsae | chromosome:chrX:5854175:5854268:-1 | Opposite_strand|Intronic_non-coding|NM_172925|Klhl31 ## Same_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_004119|FLT3 ## Opposite_strand|Intronic_coding|NM_007736|Col4a5 ## {Repeats: no} |
block4729 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 28 | 6 | 3arm | 1 | nd | 0.22 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------AAUCAGA-------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------------------------AAATCAGAGTGGATCGTG---------------------------- | 18 | 1 | |
| cbriggsae | tttgaacatcatttcagggcgccagatccgcgtttcgaactgatgaatggatacatcaaacAAATCAGAGTGGATCGTGgatacgagaagcttggggataaaatcaa | ||
| *********************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001029639 | ||
| --------------------------------------------------------------------------------------------------------------------- | NM_203923 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001111199 | ||
| --------------------------------------------------------------------------------------------------------------------- | NM_001030661 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001127188 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001003666 | ||
| cbriggsae | .((((.....(((((..(((.....(((((((.((((..(((((.....((....))......)))))..)))).))))))).......)))..)))))....)))) | 0.960 -27.10 |
| cbriggsae | chromosome:chrX:18869387:18869493:-1 | Same_strand|Intronic_coding|NM_001029639|M163.11 ## Opposite_strand|Intronic_non-coding|NM_203923|abcb4 ## Same_strand|Intronic_non-coding|NM_001111199|zgc:173710 ## {Repeats: no} |
block4889 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.038 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 40 | 2 | 5arm | 1 | nd | 0.28 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------CUGGACC------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------ACTGGACCGGATTGTTGT-------------------------------------------------------------- | 18 | 1 | |
| cbriggsae | gagcttcagatggagtaccgaagcttcagttgaagatcgcACTGGACCGGATTGTTGTcgtctactcggagcaatctttctggttcctgactttatttgctttggagctactggagactt | ||
| ************************************************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_153821 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_125756 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_204793 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_079593 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_169386 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_176459 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001016575 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001085944 | ||
| cbriggsae | (((((((((....(((.(((((((......(((((.(((.((..((..((((((((.(((......))))))))))).))..))...))))))))...))))))).))).)))))).))) | 0.980 -39.10 |
| cbriggsae | chromosome:chrX:6619048:6619167:1 | Opposite_strand|Intronic_non-coding|NM_153821|Prrx1 ## Same_strand|Intronic_coding|NM_125756|HEN3 ## Same_strand|Intronic_non-coding|NM_079593|pros ## {Repeats: no} |
block1717 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.139 | no | no | 0.42/0.42 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 15 | 16 | 3arm | 1 | nd | 0.15 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------UUCGAAG--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------GTTCGAAGAGTTTCAACAGAAGACGT--------------- | 26 | 1 | |
| cbriggsae | atcaaactcaccgaactctcagttgctgaagctcgtcgaaatccattcgaggtccgtaattgaattggttggtcatcGTTCGAAGAGTTTCAACAGAAGACGTtttttgaagctgatc | ||
| ********************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001087791 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001047975 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001858 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_213264 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_131292 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_080680 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001845 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_021881 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_007739 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_181277 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001083336 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_176995 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001006951 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001081764 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001046199 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001005153 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001002980 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001014971 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_204790 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001082666 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_079524 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_206442 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_206443 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_212528 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_201478 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_182968 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_033150 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_080629 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_000089 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_005381 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001107100 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_000393 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_080681 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_005718 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_004845 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_080680 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001844 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_080679 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001854 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_212579 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_080630 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_007736 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001083844 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_007738 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_031366 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_199214 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_009926 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_031362 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_031365 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_134452 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_000092 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_000091 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001024960 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001024959 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_078485 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001851 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001079992 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_001130548 | ||
| cbriggsae | ((((...(((..(((((((...(((.((((((((.(((((..(((..(((..((.......)).)))..)))......))))).)))))))).))).))).))))..)))...)))). | 0.930 -29.80 |
| cbriggsae | chromosome:chrIII:6677084:6677201:1 | Same_strand|Intronic_coding|NM_001087791|col2a1b ## Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_213264|col9a1 ## Same_strand|Intronic_non-coding|NM_176995|C230078M08Rik ## {Repeats: no} |
block51 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.664 | no | no | 0.33/0.33 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 25 | 5arm | 1 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -UUGUCUG----------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| GTTGTCTGCCAGAATAAATTCAAT------------------------------------------------------------------- | 24 | 1 | |
| cbriggsae | GTTGTCTGCCAGAATAAATTCAATaggaagtcttagaaaatcgaagtgtataggtccgcacattggtccattgaaaagtactaatagatga | ||
| ******************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_057259 | ||
| ----------------------------------------------------------------------------------------------------- | NM_057282 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_008855 | ||
| ----------------------------------------------------------------------------------------------------- | NM_061553 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_067080 | ||
| cbriggsae | .(((((((..((.((...((((((.(((............((((.((((........)))).)))))))))))))..)).))..))))))) | 0.570 -13.70 |
| cbriggsae | chromosome:chrI:1514838:1514928:-1 | Same_strand|Intronic_non-coding|NM_057259|l(2)37Cc ## Opposite_strand|Intronic_non-coding|NM_057282|RpLP1 ## Same_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no} |
block278 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.702 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 16 | 5arm | 2 | nd | 0.27 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---AUUUCGG-------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --GATTTCGGTGAGCTCCGTTTGG------------------------------------------------------------------ | 22 | 1 | |
| cbriggsae | gtGATTTCGGTGAGCTCCGTTTGGtacattgcggcatttctcttgaattctgtggcacgcaaaatcgactgtagatcgttgctgattgca | ||
| ****************************************************************************************** | |||
| ---------------------------------------------------------------------------------------------------- | NM_174569 | ||
| ---------------------------------------------------------------------------------------------------- | NM_174283 | ||
| ---------------------------------------------------------------------------------------------------- | NM_002035 | ||
| ---------------------------------------------------------------------------------------------------- | NM_177366 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001107428 | ||
| ---------------------------------------------------------------------------------------------------- | NM_053878 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_008665 | ||
| cbriggsae | ((((((.((..((.((.((.(((((...(((((((..(((....))).......)).))))).))))).)).)).))..))..)))))). | 0.480 -18.60 |
| cbriggsae | chromosome:chrI:2072830:2072919:1 | Opposite_strand|Intronic_non-coding|NM_174569|PABPN1 ## Same_strand|Intronic_non-coding|NM_001107428|Zfp612 ## Opposite_strand|Intronic_coding|NM_053878|Cplx2 ## Same_strand|Intronic_coding|NM_008665|Myt1 ## {Repeats: no} |
block362 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.638 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 11 | 3arm | 1 | nd | 0.30 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------AUCCUUC-------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------TATCCTTCTCGAGCAGTCAG-- | 20 | 1 | |
| cbriggsae | ctttttctgtttcagtagttagtaaaaaaccacgacataaagttagccatatTATCCTTCTCGAGCAGTCAGag | ||
| ************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_008855 | ||
| ------------------------------------------------------------------------------------ | NM_176035 | ||
| ------------------------------------------------------------------------------------ | NM_205985 | ||
| ------------------------------------------------------------------------------------ | NM_205986 | ||
| ------------------------------------------------------------------------------------ | NM_001011629 | ||
| ------------------------------------------------------------------------------------ | NM_102365 | ||
| ------------------------------------------------------------------------------------ | NM_001084127 | ||
| ------------------------------------------------------------------------------------ | NM_001009899 | ||
| cbriggsae | ((((..((((((.((.((.(((((.......((........))......)))))..)).)).))))))..)))) | 0.940 -9.12 |
| cbriggsae | chromosome:chrI:8208731:8208804:1 | Same_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Opposite_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no} |
block591 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.568 | no | no | 0.35/0.35 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 6 | 5arm | 2 | nd | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----AUGUUCU-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---AATGTTCTATGTAGCTGTTAGTC----------------------------------------------------------- | 23 | 1 | |
| cbriggsae | tggAATGTTCTATGTAGCTGTTAGTCgtgtcacctctttgaaaggacttcatttggctggattgcatacaaacaagataattttc | ||
| ************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_075282 | ||
| ----------------------------------------------------------------------------------------------- | NM_011794 | ||
| cbriggsae | ((..((((...((.((((((..((((...(((......)))...)))).....)))))).)).)))).))............... | 0.900 -14.10 |
| cbriggsae | chromosome:chrII:2278975:2279059:-1 | Same_strand|Intronic_non-coding|NM_075282|wrs-1 ## Opposite_strand|Intronic_non-coding|NM_011794|Bpnt1 ## {Repeats: no} |
block628 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.58/0.62 | 21/24/1.00 | 0.0 | 1.5 | 2 | 0 | 1 | 0 | 0 | 7 | 3arm | 3 | nd | 0.09 | 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------GGGUUCG---------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------TGGGTTCGAACCCCACTCGTGCTA | 24 | 1 | |
| ------------------------------------------------------TGGGTTCGAACCCCACTCGTG--- | 21 | 1 | |
| cbriggsae | atggccgagtggttaaggcgttggacttaagttccaatggtggataacaccgcgTGGGTTCGAACCCCACTCGTGCTA | ||
| ****************************************************************************** | |||
| ---------------------------------------------------------------------------------------- | NM_140813 | ||
| ---------------------------------------------------------------------------------------- | NM_001002069 | ||
| ---------------------------------------------------------------------------------------- | NM_001875 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_063434 | ||
| cbriggsae | .(((((((((((....((..(((((((((.((......((((.....)))))).))))))))).))))))))).)))) | 0.640 -29.80 |
| cbriggsae | chromosome:chrII:4091891:4091968:-1 | Opposite_strand|Intronic_non-coding|NM_140813|RpL26 ## Same_strand|Intronic_coding|NM_063434|cuticulin ## {Repeats: no} |
block846 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.497 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 15 | 3arm | 1 | nd | 0.20 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------AAGAUGA------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------GAAGATGAGAAGTACTGGAA- | 20 | 1 | |
| cbriggsae | acttgttggtgacttgacatccgtactcggtcattttattgatttgtgtgtgctGAAGATGAGAAGTACTGGAAg | ||
| *************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001011629 | ||
| ------------------------------------------------------------------------------------- | NM_177366 | ||
| ------------------------------------------------------------------------------------- | NM_001107213 | ||
| ------------------------------------------------------------------------------------- | NM_061557 | ||
| ------------------------------------------------------------------------------------- | NM_201205 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_020988 | ||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................................. | NM_170973 | ||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................................. | NM_170974 | ||
| cbriggsae | .(((.(((((.((((..((((.((((.((((((......))))...)).))))....))))..)))))))))))) | 0.420 -13.80 |
| cbriggsae | chromosome:chrII:13928674:13928748:-1 | Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_177366|Gpr157 ## Opposite_strand|Intronic_coding|NM_061557|rog-1 ## {Repeats: no} |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 25 | Next page | Jump 10 pages forward | Page 70 |
©2008 InteRNA Genomics B.V.