other hairpins
block882 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.568 | no | no | 0.35/0.35 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 6 | 5arm | 2 | nd | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----AUGUUCU-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---AATGTTCTATGTAGCTGTTAGTC----------------------------------------------------------- | 23 | 1 | |
| cbriggsae | tggAATGTTCTATGTAGCTGTTAGTCgtgtcacctctttgaaaggacttcatttggctggattgcatacaaacaagataattttc | ||
| ************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------- | NM_075282 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_011794 | ||
| ----------------------------------------------------------------------------------------------- | NM_062385 | ||
| cbriggsae | ((..((((...((.((((((..((((...(((......)))...)))).....)))))).)).)))).))............... | 0.900 -14.10 |
| cbriggsae | chromosome:chrII:2309291:2309375:1 | Opposite_strand|Intronic_non-coding|NM_075282|wrs-1 ## Same_strand|Intronic_non-coding|NM_011794|Bpnt1 ## Opposite_strand|Intronic_coding|NM_062385|twk-2 ## {Repeats: no} |
block1175 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.142 | no | no | 0.62/0.62 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 0 | 3arm | 2 | nd | 0.22 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------CACGCCA---------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------GCACGCCATTGGTAGCTGAGGTGG | 24 | 1 | |
| cbriggsae | accatctcatgctctggcagatgctcgccttcttcctgttccacctcttcttGCACGCCATTGGTAGCTGAGGTGG | ||
| **************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001085229 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_062047 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_062035 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_066275 | ||
| cbriggsae | .((((((((.((((((((...(((............................))).)))...)).))))))))))) | 0.490 -19.39 |
| cbriggsae | chromosome:chrII_random:1795271:1795346:-1 | Same_strand|Intronic_non-coding|NM_001085229|ATDCI1 ## Same_strand|Intronic_coding|NM_062035|lin-8 ## {Repeats: no} |
block1700 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.038 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 7 | 3arm | 1 | nd | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------UGUAAUU---------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------GTGTAATTGAAGCTATTGGC---- | 20 | 1 | |
| cbriggsae | attgccatttggaaatcgagattgctgtagggattggcttgtgggGTGTAATTGAAGCTATTGGCagta | ||
| ********************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001087791 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_203889 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007736 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_080630 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001100911 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_182968 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_080630 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_009932 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_080629 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_032518 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_016919 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_016919 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007734 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001847 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031362 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_073308 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_153393 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001102607 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_131292 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_032085 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007741 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031365 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_033641 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_134452 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000093 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_027770 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001002979 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031366 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031366 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001032535 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001005153 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001082901 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_214509 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_205348 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001046199 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_027770 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001079401 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001090075 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_203905 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001006951 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001031818 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001087652 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001105288 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_214509 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_214510 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001011005 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001088739 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_214511 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_203905 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001095843 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001097192 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001105289 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001087789 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_205021 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001086968 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_205348 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_214511 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001079401 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_204790 | ||
| ------------------------------------------------------------------------------- | NM_203889 | ||
| ------------------------------------------------------------------------------- | NM_001090075 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001031818 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_204790 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031366 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001083844 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_212528 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001022613 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007736 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_033381 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001076831 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001083844 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007742 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_205334 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001856 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_033381 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_033380 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_152890 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_152890 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047235 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_182968 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001854 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001083844 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001079992 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031365 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000494 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_033380 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007732 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_080629 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_021760 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_009931 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001846 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_032085 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_198721 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000088 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_029838 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_015734 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007737 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_064382 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001114038 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007735 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007738 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001079992 | ||
| ------------------------------------------------------------------------------- | NM_009930 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001106366 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001850 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007737 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_146007 | ||
| ------------------------------------------------------------------------------- | NM_199214 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_009928 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_080680 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007735 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_009931 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007738 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001106858 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_009926 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001106858 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031362 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001852 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_020351 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007734 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_009930 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000393 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001113224 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_032888 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001854 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_214466 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001101980 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000495 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000495 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000493 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000092 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000093 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000091 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000091 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001083827 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001083827 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001079992 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001122918 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001123230 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_205334 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001110340 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001001135 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001129326 | ||
| ------------------------------------------------------------------------------- | NM_001026043 | ||
| cbriggsae | (((((((..(((...((((...((((.((.((......)).)).))))...))))..))).))))))). | 1.000 -16.80 |
| cbriggsae | chromosome:chrIII:5613449:5613517:1 | Same_strand|Intronic_coding|NM_001087791|col2a1b ## Same_strand|Intronic_non-coding|NM_182968|col1a2 ## Opposite_strand|Intronic_coding|NM_203889|col2a1 ## {Repeats: no} |
block1868 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.684 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 7 | 5arm | 1 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----AUUUUUA------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---TATTTTTACCACACGGGGTCG----------------------------------------------------- | 21 | 1 | |
| cbriggsae | tgtTATTTTTACCACACGGGGTCGgcaaaactgaaagtttatgtgttgagaatctgtaaaatccgtaaaactcgcaa | ||
| ***************************************************************************** | |||
| cbriggsae | (((...((((((...(((((.((((((((((.....))))...))))))...))))).......))))))...))). | 0.960 -11.50 |
| cbriggsae | chromosome:chrIII_random:1972:2048:1 | {Repeats: no} |
block1979 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.014 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 3 | 31 | 3arm | 1 | nd | 0.05 | 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------GUGAAGU--------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------------------------TGTGAAGTGGTTTAGAGGAG--- | 20 | 2 | |
| cbriggsae | ttctgttccatctataccacccttcattcgaataaaaatttcagtttcacagcgtttgcttcagaatttttgaatttttaaaactcatTGTGAAGTGGTTTAGAGGAGaga | ||
| *************************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_070351 | ||
| ------------------------------------------------------------------------------------------------------------------------- | NM_001090906 | ||
| ------------------------------------------------------------------------------------------------------------------------- | NM_182271 | ||
| ------------------------------------------------------------------------------------------------------------------------- | NM_001102902 | ||
| ------------------------------------------------------------------------------------------------------------------------- | NM_113688 | ||
| cbriggsae | .(((.((((.((((.(((((..(((((..((.((((((.(((((.(((..(((....)))...)))...)))))))))))....))...)))))))))).))))))))))) | 0.950 -26.10 |
| cbriggsae | chromosome:chrIV:2034546:2034656:-1 | Same_strand|Intronic_non-coding|NM_070351|LLC1.2 ## Opposite_strand|Intronic_non-coding|NM_001090906|EEF1D ## Opposite_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no} |
block2054 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.889 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 4 | 24 | 3arm | 1 | nd | 0.30 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------UUAAUCG---------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------------------------------TTTAATCGAGATGTAATGTG---- | 20 | 2 | |
| cbriggsae | ttgtattgaatttttttcgaaattaaaaaaaaaccatttcataaatctctgcttcattcagtatttaattgttgggaatttcaatttgttttagTTTAATCGAGATGTAATGTGacaa | ||
| ********************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001105717 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_198022 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_112886 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_020066 | ||
| -------------------------------------------------------------------------------------------------------------------------------- | NM_069344 | ||
| cbriggsae | .(((.....(((..((((((..(((((..(((((........((.((((.((..................)).)))).)).......)))))..)))))))))))...)))...))). | 0.550 -12.73 |
| cbriggsae | chromosome:chrIV:3348362:3348479:-1 | Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no} |
block2086 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.101 | no | no | 0.24/0.24 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 30 | 3arm | 1 | nd | 0.14 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------AAUUUUA--------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------------------------------TAATTTTATTGGCTCTATATG-- | 21 | 1 | |
| cbriggsae | ttgtgagggctaatggcattttatacgacttttctgcgataattttttctttttcaacaatgtctgaaatgtaacgaaaaaaatcgcttcgcgaTAATTTTATTGGCTCTATATGac | ||
| ********************************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_069166 | ||
| cbriggsae | ((((((((((((((((....((((.((........(((((..(((((((..(((((........)))))......))))))))))))....))))))..))))))))))).))))). | 0.900 -23.60 |
| cbriggsae | chromosome:chrIV:4113332:4113448:-1 | Same_strand|Intronic_coding|NM_069166|acc-2 ## {Repeats: no} |
block2348 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.589 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 10 | 5arm | 1 | nd | 0.24 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --GAGUUUC-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -TGAGTTTCATGGGTGTTGTAT------------------------------------------------------- | 21 | 1 | |
| cbriggsae | tTGAGTTTCATGGGTGTTGTATttagaaattgatgtcactttcaaaatttcacggaaaagaactacggaaattgaaa | ||
| ***************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_071218 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001083250 | ||
| --------------------------------------------------------------------------------------- | NM_001085890 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_070819 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_002710 | ||
| --------------------------------------------------------------------------------------- | NM_070649 | ||
| cbriggsae | ((.((((((...(((.((((((((.((((.((....)).)))).))))...))))......)))...)))))).)). | 0.730 -10.50 |
| cbriggsae | chromosome:chrIV:133581:133657:1 | Same_strand|Intronic_coding|NM_071218|str-253 ## Same_strand|Intronic_non-coding|NM_001083250|rom-4 ## Opposite_strand|Intronic_non-coding|NM_001085890|MGC52856 ## Opposite_strand|Intronic_coding|NM_070649|C52D10.1 ## {Repeats: no} |
block2373 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.490 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 8 | 3arm | 1 | nd | 0.15 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------CGGAAGU---------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------TCGGAAGTGCGGACACTAGG---- | 20 | 1 | |
| cbriggsae | ttttttactgtttcaattgcatgtctaaattactttaaacaattgggagttgaTCGGAAGTGCGGACACTAGGaaat | ||
| ***************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_070458 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061817 | ||
| --------------------------------------------------------------------------------------- | NM_182297 | ||
| cbriggsae | (((((((.((((.....(((((.(((.....(((((.........))))).....))).))))))))).))))))). | 0.990 -12.70 |
| cbriggsae | chromosome:chrIV:1073397:1073473:1 | Same_strand|Intronic_non-coding|NM_070458|Y73F8A.24 ## Opposite_strand|Intronic_non-coding|NM_182297|B0546.4 ## {Repeats: no} |
block2376 [novel_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.942 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 3 | 16 | 5arm | 1 | nd | 0.29 | 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----ACAGAGU------------------------------------------------------------------------------------ | 3 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---TACAGAGTTCGCGTGTGTGGT----------------------------------------------------------------------- | 21 | 3 | |
| cbriggsae | caaTACAGAGTTCGCGTGTGTGGTaaaaatcatttttcagtcccctgccaaatcttgaagtgtatgttcccatgttaaacttacaatcgtattgg | ||
| *********************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_070458 | ||
| --------------------------------------------------------------------------------------------------------- | NM_182297 | ||
| --------------------------------------------------------------------------------------------------------- | NM_070440 | ||
| cbriggsae | ((((((.(((((.(((((...((.((....((((((.(((....))).........))))))....)))))))))..)))))......)))))). | 0.410 -12.20 |
| cbriggsae | chromosome:chrIV:1104351:1104445:1 | Same_strand|Intronic_non-coding|NM_070458|Y73F8A.24 ## Opposite_strand|Intronic_non-coding|NM_182297|B0546.4 ## Opposite_strand|Intronic_coding|NM_070440|Y73F8A.5 ## {Repeats: no} |
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©2008 InteRNA Genomics B.V.