miR-Intess: classification

other hairpins

novel_lenNOK_nonpairedHIGH_bulgeHIGH (44 loci)

block2512 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.510	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	26	6	5arm	2	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UUUUUGA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------GTTTTTGAGTAGTGATGCT-------------------------------------------------------------------	19	1
cbriggsae	tgaacctccatgattctaaagtttacGTTTTTGAGTAGTGATGCTttccggtcccttttccggccctcaaaatgttcaattacctttcaaatttgttttttgatgcatttca
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_001105717
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198022
cbriggsae	.(((.....(((..((.((((...(((..((((((..(((((.....((((........))))...............)))))..))))))..))).))))))..)))))).	0.540 -15.85

cbriggsae

chromosome:chrIV:3104954:3105065:1

Opposite_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Same_strand|Intronic_non-coding|NM_198022|Tnrc6c ## {Repeats: no}

block2518 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.040	no	no	0.42/0.42	19/19/0.00	0.0	0.0	2	0	1	0	9	21	5arm	1	nd	0.32	4	2	1	na	na

		reads	miRBase family seed
seed	----------ACAAGUG--------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---------GACAAGTGACCGAATCAAA---------------------------------------------------------------	19	2
cbriggsae	ctacaatttGACAAGTGACCGAATCAAAgtaatcaaagttatcctgatgctttatttggatttcgatttgctttttcggattgttagtagt
	*******************************************************************************************
	-----------------------------------------------------------------------------------------------------	NM_001105717
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198022
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020066
cbriggsae	((((....((((((....(((((..(((((((........((((.((((...)))).))))......)))))))))))).)))))))))).	0.980 -19.24

cbriggsae

chromosome:chrIV:3237920:3238010:1

Opposite_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Same_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Same_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block2545 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.973	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	6	2	5arm	1	nd	0.47	4	1	1	na	na

		reads	miRBase family seed
seed	-------GAUUGUC--------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------TGATTGTCCTTCGGCTTGG---------------------------------------------	19	1
cbriggsae	gcttaaTGATTGTCCTTCGGCTTGGaatcgaaactttgcaagtgtgtattgccgtaaaacctaaattagg
	**********************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069173
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067472
	--------------------------------------------------------------------------------	NM_069190
cbriggsae	.((((((....((....(((((((.((........)).))).........))))....))....))))))	0.590 -8.40

cbriggsae

chromosome:chrIV:3874436:3874505:1

Same_strand|Intronic_coding|NM_069173|Y73F4A.1 ## Same_strand|Intronic_non-coding|NM_067472|Y38C1AA.6 ## Opposite_strand|Intronic_coding|NM_069190|daf-10 ## {Repeats: no}

block2652 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.627	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	8	18	5arm	1	24	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	---------UCACAGC------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------TTCACAGCTTGGACAATTG-------------------------------------------------------------------	19	1
cbriggsae	aactctagTTCACAGCTTGGACAATTGaaaaatgacttccggaagtttcagatcttcgacgaaggaatcgctcaatacatgttgactgatgttg
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_001027775
	--------------------------------------------------------------------------------------------------------	NM_066961
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_001038343
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068444
cbriggsae	(((..((((...((((.((....(((((...((..((((..((((........))))...))))..))...))))).)).))))))))..))).	0.700 -16.70

cbriggsae

chromosome:chrIV:8412671:8412764:1

Opposite_strand|Intronic_coding|NM_001027775|Y75B8A.37 ## Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## Same_strand|Intronic_coding|NM_001038343|T19E7.6 ## {Repeats: no}

block2718 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.800	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	28	13	5arm	2	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------CUUCCUG------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------GCTTCCTGGTTGCGACTG--------------------------------------------------------------------------	18	1
cbriggsae	ctgatgtcctagagatcattgtggtgctGCTTCCTGGTTGCGACTGcgaaggactggtctattggcttctcggtgtcccttggagagtcgatcaattgtggcccgctgctggatgatagt
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014738
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014739
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080349
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_167375
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_167376
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_121448
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076831
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	----------------------------------------------------------------------------------------------------------------------------------	NM_068895
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	----------------------------------------------------------------------------------------------------------------------------------	NM_001091797
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001036805
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_179831
	----------------------------------------------------------------------------------------------------------------------------------	NM_214491
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031809
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034853
cbriggsae	(((.(((((.((........((((.(((((....((((((...((.(((.((((.((((....)))).......)))).))).))...))))))...)))))))))..))))))).))).	0.460 -33.40

cbriggsae

chromosome:chrIV:10917563:10917682:1

Same_strand|Intronic_coding|NM_001014737|up ## Opposite_strand|Intronic_coding|NM_068895|C33H5.17 ## {Repeats: no}

block2850 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.075	no	no	0.50/0.50	26/26/0.00	0.0	0.0	1	0	1	0	12	2	3arm	1	nd	0.31	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------UUCAGCU------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------GTTCAGCTCGTCCTCTAACTTCATCC------------	26	1
cbriggsae	tagttcaataatgaagttggcgagatttgaaaaccaagaagacatcGTTCAGCTCGTCCTCTAACTTCATCCattattgtctct
	************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079659
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206502
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169746
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169747
	----------------------------------------------------------------------------------------------	NM_001095500
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065289
	----------------------------------------------------------------------------------------------	NM_001024205
	----------------------------------------------------------------------------------------------	NM_001077467
	----------------------------------------------------------------------------------------------	NM_001078490
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067803
cbriggsae	.((..(((((((((((((((((((...((((......((.....)).)))).))))))....))))))))....)))))...))	0.920 -17.20

cbriggsae

chromosome:chrIV:14737840:14737923:1

Same_strand|Intronic_non-coding|NM_079659|cher ## Opposite_strand|Intronic_coding|NM_001095500|LOC496349 ## Opposite_strand|Intronic_non-coding|NM_001024205|Nufip2 ## Same_strand|Intronic_coding|NM_067803|cdh-10 ## {Repeats: no}

block2887 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.339	no	no	0.27/0.27	26/26/0.00	0.0	0.0	1	0	1	0	8	1	3arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------UUAAGAG--------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------ATTAAGAGGTTCTATAATCACAGAAT--------	26	1
cbriggsae	agtttttggggtctggaagaggacagttttttttttgATTAAGAGGTTCTATAATCACAGAATacgagcta
	***********************************************************************
	---------------------------------------------------------------------------------	NM_075117
cbriggsae	(((((.((...((((((..(((((..(((..((...))..)))..)))))....)).)))).)).))))).	0.830 -12.40

cbriggsae

chromosome:chrIV_random:116162:116232:1

Opposite_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## {Repeats: no}

block2915 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.798	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	8	21	3arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------CCAGCAG-------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------------TCCAGCAGGCGTGTTAATC--------	19	1
cbriggsae	tcagtctgtactgcgtaggtttttctcaacaatgtctaaaattctccgtttcaagttttccatttcttccagaattttccaatttcagggaTCCAGCAGGCGTGTTAATCagaattga
	**********************************************************************************************************************
cbriggsae	((((((((.((.((((..(((..((((...(((....((((((((.........................))))))))...)))...))))...)))..))))))....)))).))))	0.880 -17.61

cbriggsae

chromosome:chrIV_random:677608:677725:1

{Repeats: no}

block2925 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.696	no	no	0.26/0.26	27/27/0.00	0.0	0.0	1	0	1	0	19	7	5arm	2	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------UUUUAUA----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------GTTTTATAATAATTGGGATAGTTGTAG---------------------------------------------------------------	27	1
cbriggsae	ccagttttttcttagtcttGTTTTATAATAATTGGGATAGTTGTAGtggagctataaatacagctttaactaatcgtctaggtgattatttcatatttgtcttttttgg
	*************************************************************************************************************
cbriggsae	((((........(((...((....(((((.((..(((..((((...(((((((........)))))))..))))..)))..)).)))))..))...)))......))))	0.440 -15.34

cbriggsae

chromosome:chrM:1414:1522:-1

{Repeats: no}

block2962 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.030	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	10	21	3arm	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------CUUUCAG---------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------ACTTTCAGTCAACTTTCAG----------	19	1
cbriggsae	tgaaattttgggctgaaaatagctgaaaatggtccaaaaattcgaaaaattcaagtttagctcgaaaaatctggaACTTTCAGTCAACTTTCAGatgattttca
	********************************************************************************************************
cbriggsae	.((((.((....((((((...(((((((....((((....(((((.((((....))))...))))).....))))..)))))))....))))))..)).)))).	0.870 -21.70