other hairpins
block2851 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.115 | no | no | 0.32/0.32 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 3 | 5arm | 1 | nd | 0.18 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------UAUCAAU------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------TTATCAATTCCTGAACAAAGCT----------------------------------------------------------------------- | 22 | 1 | |
| cbriggsae | ttagttccagtTTATCAATTCCTGAACAAAGCTcataaaataaatcacgaaatgagcgaagaaacatgttcaattggaaatcaccgtggttcaatggattctga | ||
| ******************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_079659 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_206502 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_169746 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_169747 | ||
| ------------------------------------------------------------------------------------------------------------------ | NM_001095500 | ||
| ------------------------------------------------------------------------------------------------------------------ | NM_001024205 | ||
| ------------------------------------------------------------------------------------------------------------------ | NM_001077467 | ||
| ------------------------------------------------------------------------------------------------------------------ | NM_001078490 | ||
| ------------------------------------------------------------------------------------------------------------------ | NM_001093393 | ||
| cbriggsae | ((((.((((....((((.((((((((((..((((((...............)))))).........))))))...)))).......))))....))))..)))) | 0.410 -19.26 |
| cbriggsae | chromosome:chrIV:14793450:14793553:1 | Same_strand|Intronic_non-coding|NM_079659|cher ## Opposite_strand|Intronic_coding|NM_001095500|LOC496349 ## Opposite_strand|Intronic_non-coding|NM_001024205|Nufip2 ## {Repeats: no} |
block2901 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.897 | no | no | 0.33/0.33 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 6 | 3arm | 1 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------UCCCUCA------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------TTCCCTCATTTTTTAGTTGTG----------- | 21 | 1 | |
| cbriggsae | tgccgttacagatgcagcgtatagactgatcggttaagcaaagtttagTTCCCTCATTTTTTAGTTGTGttacattcgct | ||
| ******************************************************************************** | |||
| cbriggsae | .((.......((((((((....(((.(((..((.(((((...)))))...)).))).)))...))))))))......)). | 0.990 -11.32 |
| cbriggsae | chromosome:chrIV_random:439856:439935:1 | {Repeats: no} |
block2923 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 6 | 3 | 3arm | 3 | nd | 0.15 | 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------ACACAAG------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------TACACAAGATTACAACTCTA------ | 20 | 2 | |
| cbriggsae | ttaaatggggttttagtttagtaaaaatatgtgttttgcaTACACAAGATTACAACTCTAtttggg | ||
| ****************************************************************** | |||
| cbriggsae | ((((((((((((.((((((.((.....(((((.....))))).)).)))))).)))))))))))). | 0.940 -15.80 |
| cbriggsae | chromosome:chrM:208:273:-1 | {Repeats: no} |
block2935 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.365 | no | no | 0.19/0.19 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 35 | 2 | 3arm | 3 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------UUUUAAA------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------ATTTTAAAATGTTTACTTGTG----------------------------------- | 21 | 1 | |
| cbriggsae | ttagataattttaagagatgatgttttggtactatagaataatttagcttaatagtttATTTTAAAATGTTTACTTGTGgtgtaaaagaaatttagagctttaaaatttattta | ||
| ****************************************************************************************************************** | |||
| cbriggsae | .(((((((.(((.((((.(((..((((..((((((((((((.(((((..(((....)))..))))).)))))...)))))))..))))....)))...)))).))).))))))) | 0.970 -16.30 |
| cbriggsae | chromosome:chrM:3454:3567:-1 | {Repeats: no} |
block2948 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.492 | no | no | 0.35/0.38 | 20/22/1.00 | 0.0 | 1.0 | 3 | 0 | 1 | 0 | 22 | 7 | 3arm | 2 | nd | 0.18 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------GUGAGUU------------------------------------ | 3 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------AGTGAGTTCATAAAGCAAGT------------------------ | 20 | 1 | |
| ------------------------------------------------------AGTGAGTTCATAAAGCAAGTCT---------------------- | 22 | 1 | |
| ------------------------------------------------------AGTGAGTTCATAAAGCAAGTC----------------------- | 21 | 1 | |
| cbriggsae | ttgatatagcataagaagtgcatttgttttaagcgcaaaagatataagtcaactAGTGAGTTCATAAAGCAAGTCTtctaaatttgttctaggttaaa | ||
| ************************************************************************************************** | |||
| cbriggsae | (((((.(((.((((((((...(((((((((((((.((...(((....)))......)).)))..))))))))))))))).....))).))).))))). | 0.840 -14.60 |
| cbriggsae | chromosome:chrM:10685:10782:-1 | {Repeats: no} |
block3000 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.108 | no | no | 0.50/0.50 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 15 | 10 | 3arm | 1 | nd | 0.25 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------UUGUCCG------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------------GTTGTCCGCCTTGAATTGTTCCTC--------------- | 24 | 1 | |
| cbriggsae | cgtcgttttttgccatttctcggaggaagtatttgtcgtcgataattccgttattcgtcaatcttctgattaacttGTTGTCCGCCTTGAATTGTTCCTCaaggttgttgatgac | ||
| ******************************************************************************************************************* | |||
| cbriggsae | .((((((....(((........((((((..(((((..((.((((((...((((...((((......))))))))..)))))).))..)))))..))))))..)))....)))))) | 0.870 -26.30 |
| cbriggsae | chromosome:chrUn:1294731:1294845:-1 | {Repeats: no} |
block3106 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.365 | no | no | 0.19/0.19 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 35 | 2 | 3arm | 3 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------UUUUAAA------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------ATTTTAAAATGTTTACTTGTG----------------------------------- | 21 | 1 | |
| cbriggsae | ttagataattttaagagatgatgttttggtactatagaataatttagcttaatagtttATTTTAAAATGTTTACTTGTGgtgtaaaagaaatttagagctttaaaatttattta | ||
| ****************************************************************************************************************** | |||
| cbriggsae | .(((((((.(((.((((.(((..((((..((((((((((((.(((((..(((....)))..))))).)))))...)))))))..))))....)))...)))).))).))))))) | 0.970 -16.30 |
| cbriggsae | chromosome:chrUn:4217517:4217630:-1 | {Repeats: no} |
block3124 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.492 | no | no | 0.35/0.38 | 20/22/1.00 | 0.0 | 1.0 | 3 | 0 | 1 | 0 | 22 | 7 | 3arm | 2 | nd | 0.18 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------GUGAGUU------------------------------------ | 3 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------AGTGAGTTCATAAAGCAAGT------------------------ | 20 | 1 | |
| ------------------------------------------------------AGTGAGTTCATAAAGCAAGTCT---------------------- | 22 | 1 | |
| ------------------------------------------------------AGTGAGTTCATAAAGCAAGTC----------------------- | 21 | 1 | |
| cbriggsae | ttgatatagcataagaagtgcatttgttttaagcgcaaaagatataagtcaactAGTGAGTTCATAAAGCAAGTCTtctaaatttgttctaggttaaa | ||
| ************************************************************************************************** | |||
| cbriggsae | (((((.(((.((((((((...(((((((((((((.((...(((....)))......)).)))..))))))))))))))).....))).))).))))). | 0.840 -14.60 |
| cbriggsae | chromosome:chrUn:4428655:4428752:-1 | {Repeats: no} |
block3138 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 6 | 3 | 3arm | 3 | nd | 0.15 | 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------ACACAAG------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------TACACAAGATTACAACTCTA------ | 20 | 2 | |
| cbriggsae | ttaaatggggttttagtttagtaaaaatatgtgttttgcaTACACAAGATTACAACTCTAtttggg | ||
| ****************************************************************** | |||
| cbriggsae | ((((((((((((.((((((.((.....(((((.....))))).)).)))))).)))))))))))). | 0.940 -15.80 |
| cbriggsae | chromosome:chrUn:4432598:4432663:-1 | {Repeats: no} |
block3257 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.070 | no | no | 0.68/0.68 | 22/22/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 16 | 12 | 5arm | 1 | nd | 0.23 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------ACGACCG--------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------GACGACCGCCGAGTCGGTGACA------------------------------------------------------------------------- | 22 | 2 | |
| cbriggsae | tggtgagatcggctttGACGACCGCCGAGTCGGTGACAagaccgtccacttttcggttggtggcatggatctcgtgtccggctctttggtgggtactacgattctcctcga | ||
| *************************************************************************************************************** | |||
| cbriggsae | .((.(((((((......((..((((((((((((..((.((((((((((((........))))).)))).))).))..)))))))...)))))))....)))).))).)).. | 0.990 -42.10 |
| cbriggsae | chromosome:chrUn:5017654:5017764:-1 | {Repeats: no} |
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©2008 InteRNA Genomics B.V.