other hairpins
block3273 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.541 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 27 | 6 | 5arm | 1 | nd | 0.24 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------UUCUUCG-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------GTTCTTCGCAAGTCCAAATGT------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | tagaactgcatcgtgacgagctgtgatGTTCTTCGCAAGTCCAAATGTgcagctttgaagtatgtgccattggctttcggacgggtatccacatcttcggcaggctttg | ||
| ************************************************************************************************************* | |||
| cbriggsae | .....((((....(((.((..((.(((..((((((.(((.((((..((((((((....))).)))))..))))))).)))).))..)))))..)).)))))))...... | 0.820 -26.50 |
| cbriggsae | chromosome:chrUn:5195081:5195189:-1 | {Repeats: no} |
block3311 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.818 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 4 | 5arm | 1 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------CUGACUG------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------TCTGACTGTATCTTTTCTTGG----------------------------------------------------- | 21 | 1 | |
| cbriggsae | ttttgatcaaTCTGACTGTATCTTTTCTTGGcgtgtctcttgtctctcacctaaaactgaactataaaggcgggtatctcaaaa | ||
| ************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------- | NM_067560 | ||
| cbriggsae | .(((((...(((((.((.(((...(((((((.(((............)))))))....)))..))).)).)))))...))))). | 0.900 -10.30 |
| cbriggsae | chromosome:chrUn:6314734:6314817:-1 | Opposite_strand|Intronic_coding|NM_067560|nhr-76 ## {Repeats: no} |
block3362 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.740 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 14 | 12 | 3arm | 1 | nd | 0.25 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------UUUUUGA-------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------------------------------GTTTTTGATCTGCAGTCAGG-------------- | 20 | 1 | |
| cbriggsae | gcaactggatccgtaacttcctctacattcaaacgacggaatatgtatttggactccttcataaccaGTTTTTGATCTGCAGTCAGGttacgtcgtcgtgc | ||
| ***************************************************************************************************** | |||
| cbriggsae | (((....(((.((((((((...((.((.(((((.(((((..((((.....((...))..)))).)).))))))))..)).))..))))))))..))).))) | 0.620 -18.10 |
| cbriggsae | chromosome:chrUn:505080:505180:1 | {Repeats: no} |
block3456 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.142 | no | no | 0.48/0.48 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 6 | 3arm | 1 | nd | 0.30 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------AAGUUGG------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------GAAGTTGGTGGACATCAGTTCGT--------- | 23 | 1 | |
| cbriggsae | ttgttcctggatcacgatctccttctcctttagctcctcctcgagcatGAAGTTGGTGGACATCAGTTCGTctacgacgg | ||
| ******************************************************************************** | |||
| cbriggsae | .((.((.(((((.(((((.(((.((..(((((((((......)))).)))))..)).))).))).))..))))).)))). | 0.920 -20.70 |
| cbriggsae | chromosome:chrUn:3701895:3701974:1 | {Repeats: no} |
block3465 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.190 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 5 | 0 | 3arm | 8 | nd | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------UUUGAAU----------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------GTTTGAATGCAGGCCGTTGG----- | 20 | 1 | |
| cbriggsae | acgcttcaaactggtgacgttggcgggaGTTTGAATGCAGGCCGTTGGagtgt | ||
| ***************************************************** | |||
| cbriggsae | (((((((((...(((..(((((((....)))..))))...))).))))))))) | 0.850 -15.00 |
| cbriggsae | chromosome:chrUn:3914565:3914617:1 | {Repeats: no} |
block3486 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.365 | no | no | 0.19/0.19 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 35 | 2 | 3arm | 3 | nd | 0.29 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------UUUUAAA------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------ATTTTAAAATGTTTACTTGTG----------------------------------- | 21 | 1 | |
| cbriggsae | ttagataattttaagagatgatgttttggtactatagaataatttagcttaatagtttATTTTAAAATGTTTACTTGTGgtgtaaaagaaatttagagctttaaaatttattta | ||
| ****************************************************************************************************************** | |||
| cbriggsae | .(((((((.(((.((((.(((..((((..((((((((((((.(((((..(((....)))..))))).)))))...)))))))..))))....)))...)))).))).))))))) | 0.970 -16.30 |
| cbriggsae | chromosome:chrUn:4251605:4251718:1 | {Repeats: no} |
block3498 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 6 | 3 | 3arm | 3 | nd | 0.15 | 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------ACACAAG------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------TACACAAGATTACAACTCTA------ | 20 | 2 | |
| cbriggsae | ttaaatggggttttagtttagtaaaaatatgtgttttgcaTACACAAGATTACAACTCTAtttggg | ||
| ****************************************************************** | |||
| cbriggsae | ((((((((((((.((((((.((.....(((((.....))))).)).)))))).)))))))))))). | 0.940 -15.80 |
| cbriggsae | chromosome:chrUn:4254899:4254964:1 | {Repeats: no} |
block3844 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.226 | no | no | 0.26/0.26 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 1 | 5arm | 1 | nd | 0.09 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------CUUAGAG-------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------GCTTAGAGTTTTATCATGATTTT----------------------------------------------- | 23 | 1 | |
| cbriggsae | tccatattGCTTAGAGTTTTATCATGATTTTctgaaaaatgagtatcaattgaaagaacatggaattcgaaagttgga | ||
| ****************************************************************************** | |||
| ---------------------------------------------------------------------------------------- | NM_063725 | ||
| ---------------------------------------------------------------------------------------- | NM_063724 | ||
| ---------------------------------------------------------------------------------------- | NM_063620 | ||
| ---------------------------------------------------------------------------------------- | NM_070787 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_074696 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_075512 | ||
| ---------------------------------------------------------------------------------------- | NM_063730 | ||
| ---------------------------------------------------------------------------------------- | NM_063727 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_060911 | ||
| ---------------------------------------------------------------------------------------- | NM_066490 | ||
| cbriggsae | ((((....((((.(((((((((((((((.(((........))).))))..))).......))))))))..)))))))) | 0.500 -12.91 |
| cbriggsae | chromosome:chrV:13081897:13081974:-1 | Opposite_strand|Intronic_coding|NM_063725|chitinase ## Same_strand|Intronic_coding|NM_074696|clec-233 ## {Repeats: no} |
block4061 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.048 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 7 | 0 | 5arm | 5 | nd | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------CGCAAUU----------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------ACGCAATTTTTGAACGCCTC----------------------------- | 20 | 1 | |
| cbriggsae | gtgacatACGCAATTTTTGAACGCCTCtaggaggcagcagaacttgtatttaaaac | ||
| ******************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007734 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001122952 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001122953 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_010905 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000092 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_078262 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_009930 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031365 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000091 | ||
| ------------------------------------------------------------------ | NM_000945 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_053304 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031362 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_199214 | ||
| ------------------------------------------------------------------ | NM_177732 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_204790 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001081764 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001087789 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001087791 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_203889 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001083388 | ||
| ------------------------------------------------------------------ | NM_001094292 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_012929 | ||
| ------------------------------------------------------------------ | NM_153093 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001085355 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_064188 | ||
| cbriggsae | .........((((.(((((...(((((...)))))..))))).))))......... | 0.980 -13.50 |
| cbriggsae | chromosome:chrV:6963723:6963778:1 | Same_strand|Intronic_coding|NM_007734|Col4a3 ## Same_strand|Intronic_non-coding|NM_001122952|Nfia ## Opposite_strand|Intronic_non-coding|NM_000945|PPP3R1 ## {Repeats: no} |
block4380 [novel]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.195 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 8 | 25 | 5arm | 1 | nd | 0.30 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------UUUUUCA------------------------------------------------------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------GTTTTTCAACTCCTTCGTCC------------------------------------------------------------------------------------ | 20 | 2 | |
| cbriggsae | gatcctctGTTTTTCAACTCCTTCGTCCagaactcctcgataccacttgatcagcctttctatgtccaagtatacctgatgatttgggtggatggtgaagatgaagagatcc | ||
| **************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_076104 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_029999 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_022410 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031169 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001027419 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_175605 | ||
| -------------------------------------------------------------------------------------------------------------------------- | NM_181850 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_022416 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_006531 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001110786 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_033509 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001122952 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001122953 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_010905 | ||
| cbriggsae | (((.((((..((((((...(((((..(((((..((.(((.....(((((..((.........))..))))).....))).)))))))..))).))))))))...))))))). | 0.940 -26.60 |
| cbriggsae | chromosome:chrX:3802648:3802759:-1 | Same_strand|Intronic_non-coding|NM_076104|Y71H10A.2 ## Same_strand|Intronic_coding|NM_175605|IFT88 ## Opposite_strand|Intronic_non-coding|NM_181850|Grm3 ## {Repeats: no} |
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©2008 InteRNA Genomics B.V.