miR-Intess: classification

other hairpins

block3609 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.046	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	6	13	3arm	1	nd	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------AAGCAUA---------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------GAAGCATACATCCAAAATGGTCC------	23	1
cbriggsae	ggctgttctaattggcacgacagatgcgacataaagtcaatcgttcaaaaaagttgagattgactcGAAGCATACATCCAAAATGGTCCaagccg
	***********************************************************************************************
cbriggsae	(((((..(((.((((........((((.......((((((((..((((.....))))))))))))....))))....))))..)))..)).))).	0.940 -23.60

cbriggsae

chromosome:chrUn:6919709:6919803:1

{Repeats: no}

block4006 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.193	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	6	23	3arm	3	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AACCAUC-------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------GAACCATCGTGTTGGGACTAC------	21	1
cbriggsae	ttggggtcatctcggcaataaaggatcctaatttgtcaatgtttttgtaaaccgcaacaagacacttaaatccagaGAACCATCGTGTTGGGACTACatccaa
	*******************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------	NM_007590
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021252
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001075499
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_200970
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129754
	-----------------------------------------------------------------------------------------------------------------	NM_001085355
	-----------------------------------------------------------------------------------------------------------------	NM_001126147
cbriggsae	.((((((..((((((((.....((.((((.(((((....(((((((((.....))))..)))))..)))))..)).)).))....))))))))..)).)))).	0.750 -21.50

cbriggsae

chromosome:chrV:3596098:3596200:1

Opposite_strand|Intronic_non-coding|NM_007590|Calm3 ## Same_strand|Intronic_coding|NM_021252|RAB18 ## Same_strand|Intronic_non-coding|NM_200970|rab5al ## {Repeats: no}

block4060 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.357	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	26	7	3arm	1	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------CUCAGUA----------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------GCTCAGTAAGGTATTGGTTCTC--------------------------	22	1
cbriggsae	tcgacggtttccttcaagcggtcattttcagcctgaagacttgtcttatgcatttctaggttgctcagatGCTCAGTAAGGTATTGGTTCTCggttttggcggttcgaagcttgtcgg
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_078262
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	--------------------------------------------------------------------------------------------------------------------------------	NM_000945
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199214
	--------------------------------------------------------------------------------------------------------------------------------	NM_177732
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083388
	--------------------------------------------------------------------------------------------------------------------------------	NM_001094292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012929
	--------------------------------------------------------------------------------------------------------------------------------	NM_153093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085355
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------------------------------------------------------------------	NM_069472
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<----------------------------------------------------------------------------------	NM_063253
cbriggsae	.((((((....((((.(((.((((.....((((.((..(((..((((((((((((..((....)).))))))...))))))....)))..)))))).)))).))).)))).)))))).	0.800 -30.90

cbriggsae

chromosome:chrV:6939404:6939521:1

Same_strand|Intronic_coding|NM_007734|Col4a3 ## Same_strand|Intronic_non-coding|NM_001122952|Nfia ## Opposite_strand|Intronic_non-coding|NM_000945|PPP3R1 ## Opposite_strand|Intronic_coding|NM_069472|F01G10.5 ## {Repeats: no}

block4134 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.545	no	no	0.55/0.55	20/20/1.00	0.0	0.0	2	0	1	0	12	4	3arm	1	nd	0.45	4	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UAGAAGA------------------------	2	novel
		len	cloning frequencies
			AF16
	------------------------------------------------GTAGAAGAACTGGGTCTCGG------------	20	2
cbriggsae	aatctagaactcacattatgatccatcggttgactaggtcccacatcgGTAGAAGAACTGGGTCTCGGagtatctcgata
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126434
	------------------------------------------------------------------------------------------	NM_001022613
	------------------------------------------------------------------------------------------	NM_001028773
	------------------------------------------------------------------------------------------	NM_001027854
	------------------------------------------------------------------------------------------	NM_074150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113262
	------------------------------------------------------------------------------------------	NM_026039
	------------------------------------------------------------------------------------------	NM_175692
	------------------------------------------------------------------------------------------	NM_136816
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113262
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113262
cbriggsae	.(((.(((((((.......((((((((.....(((.(((.....))))))....))..))))))...)))).))).))).	0.480 -15.70

cbriggsae

chromosome:chrV:11978712:11978791:1

Same_strand|Intronic_non-coding|NM_001126434|LOC570148 ## Opposite_strand|Intronic_coding|NM_001022613|SPBC215.13 ## Same_strand|Intronic_coding|NM_001113262|Fib-h ## Opposite_strand|Intronic_non-coding|NM_026039|Med18 ## {Repeats: no}

block4208 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.491	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	11	22	5arm	4	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	------------GCUAUGA-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------GGCTATGAAGATGCGCTCGAGG-----------------------------------------------------------------------------------	22	1
cbriggsae	ggaagaataatGGCTATGAAGATGCGCTCGAGGcgtgggacttttttcgagaattcaaaacaatttttgtgtatggaggatgggccaatggcgtgcgcttttcacaaagtttatcc
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_065190
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028317
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001077602
	------------------------------------------------------------------------------------------------------------------------------	NM_062164
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039440
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032538
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067755
	------------------------------------------------------------------------------------------------------------------------------	NM_067634
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_146019
cbriggsae	(((.((((..((....((((((.((((.((.(((.((...((((...((((((((......)))))))).....))))..)).))).....)).))))))))))))..)))).)))	0.980 -27.50

cbriggsae

chromosome:chrV:13982909:13983024:1

Opposite_strand|Intronic_non-coding|NM_065190|ppfr-3 ## Same_strand|Intronic_coding|NM_001028317|Y54G2A.11 ## Opposite_strand|Intronic_coding|NM_062164|srz-5 ## {Repeats: no}

block4244 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.035	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	32	7	5arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------CUUUGAA---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------CCTTTGAACAGTCAGTGCTAG--------------------------------------------------------------	21	1
cbriggsae	ggtaagttttttatcaaatgcttctgaacctcCCTTTGAACAGTCAGTGCTAGctgtatcagaaatacgatcagctggcctttccgttcatggttgaaggcgatgagcgctactt
	*******************************************************************************************************************
cbriggsae	(((.(((..((((((....((((...((((......(((((....((.((((((((.(((........)))))))))))))....))))).))))..)))))))))).)))))).	0.780 -30.30

cbriggsae

chromosome:chrV:15993492:15993606:1

{Repeats: no}

block4370 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.566	no	no	0.71/0.71	21/21/1.00	0.0	0.0	1	0	1	0	13	1	5arm	6	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	--------------GCUAUCC--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------GGCTATCCGCGACAGCCAGCC-------------------------------------------------------	21	1
cbriggsae	cgccgcctaccctGGCTATCCGCGACAGCCAGCCggcccaaaaacggtggaaaacgacgacgatgatatagggtccccctagcgagcgg
	*****************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212435
	---------------------------------------------------------------------------------------------------	NM_007496
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_210388
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172592
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079847
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170474
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053242
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027784
	---------------------------------------------------------------------------------------------------	NM_181874
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040230
	---------------------------------------------------------------------------------------------------	NM_000844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_077242
cbriggsae	((((((..((((((..((((((((....(((.(((.........))))))....)).))..))))...)))))).......))).))).	0.680 -26.50

cbriggsae

chromosome:chrX:3350503:3350591:-1

Same_strand|Intronic_non-coding|NM_212435|Foxp2 ## Opposite_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_210388|AGOS_AER177W ## Opposite_strand|Intronic_coding|NM_181874|GRM7 ## {Repeats: no}

block4371 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.351	no	no	0.71/0.71	21/21/1.00	0.0	0.0	1	0	1	0	6	1	5arm	6	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-------GCUAUCC-----------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------GGCTATCCGCGACAGCCAGCC----------------------------------------	21	1
cbriggsae	taccctGGCTATCCGCGACAGCCAGCCggcccataaacgggggaaaacgacgacgatgatatagggt
	*******************************************************************
	-----------------------------------------------------------------------------	NM_007496
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079847
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170474
	-----------------------------------------------------------------------------	NM_181874
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040230
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_132027
	-----------------------------------------------------------------------------	NM_000844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
cbriggsae	.((((((..((((((((....((..(((.........))).))....)).))..))))...))))))	0.620 -18.10

cbriggsae

chromosome:chrX:3416783:3416849:-1

Opposite_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_079847|Mlc2 ## Opposite_strand|Intronic_coding|NM_181874|GRM7 ## Same_strand|Intronic_non-coding|NM_001040230|Ache ## {Repeats: no}

block4777 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.193	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	6	23	3arm	3	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AACCAUC-------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------GAACCATCGTGTTGGGACTAC------	21	1
cbriggsae	ttggggtcatctcggcaataaaggatcctaatttgtcaatgtttttgtaaaccgcaacaagacacttaaatccagaGAACCATCGTGTTGGGACTACatccaa
	*******************************************************************************************************
cbriggsae	.((((((..((((((((.....((.((((.(((((....(((((((((.....))))..)))))..)))))..)).)).))....))))))))..)).)))).	0.750 -21.50

cbriggsae

chromosome:chrX:20227296:20227398:-1

{Repeats: no}

block5253 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.439	no	no	0.41/0.41	22/22/1.00	0.0	0.0	2	0	1	0	26	7	5arm	2	nd	0.32	4	2	1	na	na

		reads	miRBase family seed
seed	---------------------------AAUGGAU------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------GAATGGATGAGGTTCTGGATAT----------------------------------------------------------------	22	2
cbriggsae	agcatcaattttttctaagggtttttGAATGGATGAGGTTCTGGATATtgatggcgtgatgaagtgggtaaattctccgatctattccaacgttcggaaaaagggaggagct
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_001031326
cbriggsae	(((.((..(((((((..((.(((...((((((((..((....((((.(((...((........))...))))))).)).)))))))).))).))..)))))))....)))))	0.950 -23.70