other hairpins
block2470 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.686 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 20 | 5arm | 1 | nd | 0.38 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------UCCGAUG----------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------TTCCGATGGAATACTAGGTGG---------------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | ggctcatcgcTTCCGATGGAATACTAGGTGGactcaattgctagagtgtgcgttttgctccgactctgtttcgatagctaccgtactccttcagtgaccgc | ||
| ***************************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------------------- | NM_020714 | ||
| --------------------------------------------------------------------------------------------------------------- | NM_060105 | ||
| cbriggsae | ((....(((((...((.(((.(((..(((((.((..((((.((((((..((.....))....))))))...)))))))))))))).))).))))))))).. | 0.950 -24.20 |
| cbriggsae | chromosome:chrIV:2645901:2646001:1 | Opposite_strand|Intronic_non-coding|NM_020714|ZNF490 ## {Repeats: no} |
block2804 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.152 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 25 | 5arm | 1 | nd | 0.38 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------AUUUGAG------------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------GATTTGAGTTTGGGCGGTATT----------------------------------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | gttgacttttGATTTGAGTTTGGGCGGTATTgatttctccgtggataaagttttgaatggctcggacagatgacatcatttcggtgaagttagcgtcttttcttgaatcgaacgtgtagc | ||
| ************************************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001106865 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_064726 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_069121 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_073485 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001026518 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_073512 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_073487 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_000090 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001113224 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_067159 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_031163 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_007733 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_012929 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_131595 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001087220 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001088088 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_200495 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001081764 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001090075 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_205107 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001005153 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_067074 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_131292 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_075282 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_068122 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_032085 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_027770 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_067160 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_181277 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_068002 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001087813 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001113515 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001001135 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_001130548 | ||
| cbriggsae | ((((((.(((((((..((...(((((...((((((((.(((..(((...(((((((.....)))...))))...)))....))).)))))))))))))...))..))))))).)).)))) | 0.490 -31.20 |
| cbriggsae | chromosome:chrIV:13245923:13246042:1 | Same_strand|Intronic_non-coding|NM_001106865|Ctdspl ## Opposite_strand|Intronic_non-coding|NM_064726|H10E21.1 ## Opposite_strand|Intronic_coding|NM_069121|grsp-2 ## Same_strand|Intronic_coding|NM_073485|collagen ## {Repeats: no} |
block2869 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.050 | no | no | 0.48/0.48 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 13 | 5arm | 1 | nd | 0.39 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------CGAUCAA---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------TCGATCAATTGGAATGTTGGCCC------------------------------------------------------- | 23 | 1 | |
| cbriggsae | gcgtggctTCGATCAATTGGAATGTTGGCCCaagatgaatgtatctggtacatggtcccgttggcgttcgaagatggaggcgttgc | ||
| ************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_075117 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061879 | ||
| ------------------------------------------------------------------------------------------------ | NM_067650 | ||
| cbriggsae | (((..(((((.(((..((.((((((..((....(((..((((((...)))))).)))..))..)))))).))))).)))))..))) | 0.990 -29.10 |
| cbriggsae | chromosome:chrIV_random:168628:168713:-1 | Same_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## Opposite_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## {Repeats: no} |
block2904 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.672 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 28 | 6 | 5arm | 2 | nd | 0.33 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------UCGUCGC---------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------TTCGTCGCTTCATATGTATGG--------------------------------------------------------------------- | 21 | 2 | |
| cbriggsae | tttaattttctgtgaattctgattttgaTTCGTCGCTTCATATGTATGGcaattttcaaaaaatgattacaatgaagttacacctttttcgaatttcaacctttttgctgccattgga | ||
| ********************************************************************************************************************** | |||
| cbriggsae | ((((((.....(((((...(((.(((((...((.(((((((.((((...((.(((....))).))..))))))))))).)).......)))))..))).....)))))....)))))) | 0.590 -15.10 |
| cbriggsae | chromosome:chrIV_random:483217:483334:1 | {Repeats: no} |
block2905 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.672 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 28 | 6 | 5arm | 2 | nd | 0.33 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------UCGUCGC---------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------TTCGTCGCTTCATATGTATGG--------------------------------------------------------------------- | 21 | 2 | |
| cbriggsae | tttaattttctgtgaattctgattttgaTTCGTCGCTTCATATGTATGGcaattttcaaaaaatgattacaatgaagttacacctttttcgaatttcaacctttttgctgccattgga | ||
| ********************************************************************************************************************** | |||
| cbriggsae | ((((((.....(((((...(((.(((((...((.(((((((.((((...((.(((....))).))..))))))))))).)).......)))))..))).....)))))....)))))) | 0.590 -15.10 |
| cbriggsae | chromosome:chrIV_random:491579:491696:1 | {Repeats: no} |
block2936 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.960 | no | no | 0.30/0.42 | 19/23/0.67 | 0.3 | 1.7 | 3 | 0 | 1 | 0 | 14 | 11 | 5arm | 3 | nd | 0.35 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------AUCAAAG----------------------------------------------------------------------------- | 2 | novel |
| seed | ---------------AAUCAAA------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------AATCAAAGGGTTCTAAGGATTAA-------------------------------------------------------------- | 23 | 2 | |
| --------------CAATCAAAGGGTTCTAAGG------------------------------------------------------------------- | 19 | 1 | |
| cbriggsae | gtatgtttgacttcCAATCAAAGGGTTCTAAGGATTAAtaaataatttttttcaaggttataatttattgtttcaacatagtttatttgctagttacatg | ||
| **************************************************************************************************** | |||
| cbriggsae | .(((((..((((..(((..(((..(((..((.(((.(((..((((((((....)))))))).))).))).))..)))....)))..)))..))))))))) | 0.470 -9.80 |
| cbriggsae | chromosome:chrM:4159:4258:-1 | {Repeats: no} |
block2984 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.248 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 0 | 3arm | 8 | nd | 0.40 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------UUUGAAU------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------GTTTGAATGCAGGCCGTTGG------ | 20 | 1 | |
| cbriggsae | acgcttcaaactggtgacgttggcgggaGTTTGAATGCAGGCCGTTGGggtgta | ||
| ****************************************************** | |||
| cbriggsae | ((((..(((...(((..(((((((....)))..))))...))).)))..)))). | 0.850 -14.90 |
| cbriggsae | chromosome:chrUn:875817:875870:-1 | {Repeats: no} |
block3048 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.091 | no | no | 0.43/0.43 | 23/23/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 5 | 20 | 5arm | 1 | nd | 0.43 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------UUUGAUC------------------------------------------------------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----TTTTGATCGGATCCTATTCAGCC--------------------------------------------------------------------------------- | 23 | 2 | |
| cbriggsae | tggaaTTTTGATCGGATCCTATTCAGCCgacgacatccaagtttcttcttgacgaagatgatcttcttaacgaggatgttcaccatagctgactggttttcttctccat | ||
| ************************************************************************************************************* | |||
| cbriggsae | ((((.....((..(((..(((.(((((....(((((((..((((((((.....)))))..........)))..))))))).......))))).)))..))).)))))). | 0.510 -25.80 |
| cbriggsae | chromosome:chrUn:2676729:2676837:-1 | {Repeats: no} |
block3107 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.960 | no | no | 0.30/0.42 | 19/23/0.67 | 0.3 | 1.7 | 3 | 0 | 1 | 0 | 14 | 11 | 5arm | 3 | nd | 0.35 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------AUCAAAG----------------------------------------------------------------------------- | 2 | novel |
| seed | ---------------AAUCAAA------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------AATCAAAGGGTTCTAAGGATTAA-------------------------------------------------------------- | 23 | 2 | |
| --------------CAATCAAAGGGTTCTAAGG------------------------------------------------------------------- | 19 | 1 | |
| cbriggsae | gtatgtttgacttcCAATCAAAGGGTTCTAAGGATTAAtaaataatttttttcaaggttataatttattgtttcaacatagtttatttgctagttacatg | ||
| **************************************************************************************************** | |||
| cbriggsae | .(((((..((((..(((..(((..(((..((.(((.(((..((((((((....)))))))).))).))).))..)))....)))..)))..))))))))) | 0.470 -9.80 |
| cbriggsae | chromosome:chrUn:4218222:4218321:-1 | {Repeats: no} |
block3367 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 5 | 25 | 3arm | 1 | nd | 0.33 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------UACUCAC------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------------------GTACTCACTGTTAATTTGGCC----- | 21 | 1 | |
| cbriggsae | acatgatcaaactaaccttgttttacttgatcgtcctcaaccaccatcagataacgcatggtgcacaaatgatgaaaatccaGTACTCACTGTTAATTTGGCCaagta | ||
| ************************************************************************************************************ | |||
| cbriggsae | ((.((..((((.((((..((...((((.(((..((.(((..((((((..........))))))......))).))..))).))))..))..)))).))))..)).)). | 0.990 -21.70 |
| cbriggsae | chromosome:chrUn:590407:590514:1 | {Repeats: no} |
| Back to summary page | other hairpins: | Page 1 | Previous page | Page 11 | Next page | Jump 10 pages forward | Page 70 |
©2008 InteRNA Genomics B.V.