other hairpins
block1866 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.566 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 17 | 2 | 3arm | 1 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------GACAGAU------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------AGACAGATAAGCATGATTTCG----------------- | 21 | 1 | |
| cbriggsae | tttctaattttgcgaccgcgtagctcgaactgtttgacgtcccacctcctttttAGACAGATAAGCATGATTTCGagaaagattaaagaaga | ||
| ******************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------ | NM_001034977 | ||
| cbriggsae | (((((((((((.(((...(((.(((....((((((((...............))))))))...))))))...)))...))))))..))))). | 0.890 -16.36 |
| cbriggsae | chromosome:chrIII_random:577691:577782:-1 | Opposite_strand|Intronic_non-coding|NM_001034977|pi4kb ## {Repeats: no} |
block1912 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.780 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 21 | 4 | 5arm | 1 | nd | 0.50 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------CCUUGUG------------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------TCCTTGTGATACACCCGATG------------------------------------------ | 20 | 2 | |
| cbriggsae | tagtcgatttaattactctaaTCCTTGTGATACACCCGATGagttttcccaactattaatgacactgaaatgagtgatgactg | ||
| *********************************************************************************** | |||
| --------------------------------------------------------------------------------------------- | NM_061817 | ||
| --------------------------------------------------------------------------------------------- | NM_008091 | ||
| --------------------------------------------------------------------------------------------- | NM_199692 | ||
| cbriggsae | (((((......(((((((...((...(((...((...(((.((((.....)))))))..)).))).))...)))))))))))) | 0.490 -10.40 |
| cbriggsae | chromosome:chrIV:905385:905467:-1 | Opposite_strand|Intronic_non-coding|NM_061817|cct-3 ## {Repeats: no} |
block1916 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.840 | no | no | 0.39/0.39 | 23/23/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 18 | 6 | 5arm | 1 | nd | 0.39 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------UCCUUAC----------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------GTCCTTACAGCTTGTGGTAAATT-------------------------------------------------------- | 23 | 2 | |
| cbriggsae | agatgaagttttgtccgcGTCCTTACAGCTTGTGGTAAATTgttttgtagcaaagcgttttccccgttcttccaggtccatccacaaacatcgatct | ||
| ************************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------------------- | NM_070458 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_182297 | ||
| cbriggsae | .((((....(((((......(((...((..((.((.(((.(((((((...))))))).))).))))..))...))).......)))))))))..... | 0.820 -15.42 |
| cbriggsae | chromosome:chrIV:1140102:1140198:-1 | Opposite_strand|Intronic_non-coding|NM_070458|Y73F8A.24 ## Same_strand|Intronic_non-coding|NM_182297|B0546.4 ## {Repeats: no} |
block1995 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.148 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 14 | 5 | 3arm | 1 | nd | 0.35 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------UUAGGAC-------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------TTTAGGACGCAGTCGTTTTC-------------- | 20 | 2 | |
| cbriggsae | actgtttcaatgtccaagtaactttcttgaagattttaaattatcatTTTAGGACGCAGTCGTTTTCacgtatctacagta | ||
| ********************************************************************************* | |||
| cbriggsae | (((((....((((..(((..(((.((((((((((........)))..)))))))...)))..)))..))))....))))). | 0.970 -13.50 |
| cbriggsae | chromosome:chrIV:2362119:2362199:-1 | {Repeats: no} |
block2002 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.195 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 3 | 5arm | 2 | nd | 0.50 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------GACAAUG-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------TGACAATGATTTAGGTGAGG-------------------------------------- | 20 | 1 | |
| cbriggsae | attgaagtTGACAATGATTTAGGTGAGGaaaaaatataatttcaattttttttctggaaatttcaa | ||
| ****************************************************************** | |||
| cbriggsae | .((((((((..((..((...((((...((((........)))).))))..))..))..)))))))) | 0.960 -9.40 |
| cbriggsae | chromosome:chrIV:2419758:2419823:-1 | {Repeats: no} |
block2003 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.492 | no | no | 0.35/0.35 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 31 | 3arm | 2 | nd | 0.35 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------UCGUUGU------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------------------------------TTCGTTGTGTGTGTTGTTAT------ | 20 | 1 | |
| cbriggsae | tttcagataaattacgaaaatggggttcttgagattttttgaaatttactgttttatattctccagttatcagaaacttgggaaaatttttcaaTTCGTTGTGTGTGTTGTTATaggagt | ||
| ************************************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_060112 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_020714 | ||
| cbriggsae | .(((..((((..((((..((((((.((((..((..(((((((.....((((............))))..)))))))))..))))..........))))))...))))...))))..))). | 0.540 -20.30 |
| cbriggsae | chromosome:chrIV:2448334:2448453:-1 | Same_strand|Intronic_non-coding|NM_060112|skr-1 ## {Repeats: no} |
block2006 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.048 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 24 | 3arm | 1 | nd | 0.38 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------CCCGUUU---------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------------------------------TCCCGTTTATCTTTTGAGTAG--------- | 21 | 1 | |
| cbriggsae | acttgtgctaatcttaatgatgataaattcatgttataacttctgtttcatgtatttcattttttggtttcgtgaatgataaaggtaaTCCCGTTTATCTTTTGAGTAGagtagaagt | ||
| ********************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_060112 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_020714 | ||
| cbriggsae | ((((.((((...(((((....(((((((....(((((....((...((((((....(((.....)))...)))))).)).....)))))...)))))))..)))))...)))).)))) | 0.830 -24.90 |
| cbriggsae | chromosome:chrIV:2490746:2490863:-1 | Same_strand|Intronic_non-coding|NM_060112|skr-1 ## {Repeats: no} |
block2194 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.075 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 27 | 2 | 3arm | 1 | nd | 0.43 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------UCCAGUG---------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------------------TTCCAGTGTTCTTGTTTTAGC--------------------------- | 21 | 1 | |
| cbriggsae | tctgtatttctgtttcataaagtttagaaattgattcttttgaggcttcgaatagTTCCAGTGTTCTTGTTTTAGCcttttttttgcagaaaataaacacaga | ||
| ******************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_066961 | ||
| cbriggsae | (((((.(((((((.....((((.((((((...((.....(((..(((......)))..)))...))...)))))).)))).....)))))))......))))) | 0.990 -20.00 |
| cbriggsae | chromosome:chrIV:8832447:8832549:-1 | Same_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no} |
block2446 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.038 | no | no | 0.52/0.52 | 21/21/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 11 | 10 | 3arm | 8 | nd | 0.33 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------UCCGAUC------------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------------GTCCGATCTGGCAAGTTAAGC----------- | 21 | 2 | |
| cbriggsae | ttggttaagtgcgcaaagccgcgagatgtcggtcgcttaatttcacagaaataagagggcaagcGTCCGATCTGGCAAGTTAAGCaacgttgacta | ||
| ************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_119656 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_070346 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_119655 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_000379 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001159 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001043860 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001043868 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001056955 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_079613 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_205127 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001081990 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_176668 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001008527 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001009217 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001092592 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001038692 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001044749 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001039601 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001048132 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_017154 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_011723 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_173972 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_009676 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_023631 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_023617 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_019363 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001008419 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001122938 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001008523 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001008522 | ||
| cbriggsae | .(((((((((..((..(((.((.(((..((((.(((((..((((..........))))..))))).))))))).))..)))..)).)).))))))) | 0.980 -29.20 |
| cbriggsae | chromosome:chrIV:2308387:2308482:1 | Same_strand|Intronic_coding|NM_119656|AT4G34900 ## {Repeats: no} |
block2456 [novel_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.195 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 3 | 5arm | 2 | nd | 0.50 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------GACAAUG-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------TGACAATGATTTAGGTGAGG-------------------------------------- | 20 | 1 | |
| cbriggsae | attgaagtTGACAATGATTTAGGTGAGGaaaaaatataatttcaattttttttctggaaatttcaa | ||
| ****************************************************************** | |||
| cbriggsae | .((((((((..((..((...((((...((((........)))).))))..))..))..)))))))) | 0.960 -9.40 |
| cbriggsae | chromosome:chrIV:2422217:2422282:1 | {Repeats: no} |
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©2008 InteRNA Genomics B.V.