miR-Intess: classification

other hairpins

block347 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.734	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	11	17	3arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------AAUAGGU------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------------GAATAGGTGGTAGCAAGTCAT-----------	21	1
cbriggsae	cgactgaggacgacgatatgatccttctgaaggtggaccgcgagacatggctcgagaaaataaacgcatgggcggagcttcctGAATAGGTGGTAGCAAGTCATcgtcgtagccg
	*******************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087279
	-----------------------------------------------------------------------------------------------------------------------------	NM_001075644
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177732
	-----------------------------------------------------------------------------------------------------------------------------	NM_007732
	-----------------------------------------------------------------------------------------------------------------------------	NM_214466
	-----------------------------------------------------------------------------------------------------------------------------	NM_199473
	-----------------------------------------------------------------------------------------------------------------------------	NM_073882
	-----------------------------------------------------------------------------------------------------------------------------	NM_013361
	-----------------------------------------------------------------------------------------------------------------------------	NM_007740
	-----------------------------------------------------------------------------------------------------------------------------	NM_152890
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081345
	-----------------------------------------------------------------------------------------------------------------------------	NM_013256
	-----------------------------------------------------------------------------------------------------------------------------	NM_001087019
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069710
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001021292
	-----------------------------------------------------------------------------------------------------------------------------	NM_001022757
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_018869
cbriggsae	((.(((..(((((.(((.((..((.((((.(((.((.((((....((((.................)))).))))..)).)))...)))).))...)).))).))))).))).))	0.740 -30.63

cbriggsae

chromosome:chrI:7266958:7267072:1

Same_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Opposite_strand|Intronic_coding|NM_001075644|ZNF180 ## Same_strand|Intronic_coding|NM_001081345|Chd2 ## Opposite_strand|Intronic_non-coding|NM_001087019|nr2f2 ## {Repeats: no}

block387 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.867	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	9	18	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------------AAGCACA----------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------------------TAAGCACAATTCTTCAAAATG---------	21	1
cbriggsae	gaaaaaaattttttgggagaagctgtttttttttaaattttctgtttcaaattgttctcaaagtttccgatttacagttttcgcggTAAGCACAATTCTTCAAAATGtaggttttc
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_100944
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001059280
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001050497
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001059517
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082159
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057483
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204894
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106587
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126434
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_116413
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_116412
	------------------------------------------------------------------------------------------------------------------------------	NM_061648
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011530
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_022238
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114583
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032056
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_120473
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060440
	------------------------------------------------------------------------------------------------------------------------------	NM_004098
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_100133
cbriggsae	(((((......(((.((((((..(((((.............((((...(((((((..((.........))...)))))))..)))).)))))...)))))).)))......)))))	0.660 -14.94

cbriggsae

chromosome:chrI:9056991:9057106:1

Same_strand|Intronic_coding|NM_100944|PGP10 ## Same_strand|Intronic_non-coding|NM_001106587|Tnpo3 ## Opposite_strand|Intronic_coding|NM_061648|sdz-18 ## Opposite_strand|Intronic_non-coding|NM_004098|EMX2 ## {Repeats: no}

block632 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.256	no	no	0.57/0.57	21/21/1.00	0.0	0.0	2	0	1	0	11	1	3arm	1	nd	0.38	3	2	1	na	na

		reads	miRBase family seed
seed	----------------------------------------UUGACUG------------------------	2	novel
		len	cloning frequencies
			AF16
	---------------------------------------GTTGACTGGTGTCTGACAGCG-----------	21	2
cbriggsae	ctcctcgttcgatgctccggtggttccgttgacggctccGTTGACTGGTGTCTGACAGCGtccctgggaga
	***********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006287
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009829
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039276
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201578
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114006
	<<<<<<<<<<<<<<<<<<<<<<<------------------------------------<<<<<<<<<<<<<<<<<<<<<<	NM_064658
cbriggsae	(((((.....((((((.(((.....((((..(((....)))..)).))...)))..))))))...))))).	0.990 -25.20

cbriggsae

chromosome:chrII:4309103:4309173:-1

Same_strand|Intronic_non-coding|NM_006287|TFPI ## Same_strand|Intronic_coding|NM_201578|psmd12 ## Opposite_strand|Boundary_coding|NM_064658|tac-1 ## {Repeats: no}

block781 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.404	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	24	9	5arm	9	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------CAGAAGA-----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------TCAGAAGAGATTGTGTGATGG----------------------------------------------------------------	21	1
cbriggsae	ttagtatgcatacttcctagagacTCAGAAGAGATTGTGTGATGGaaaccctcgagataaccgcgggtacgtcccgggaattatctgagctttgaacggcctgaactag
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064152
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027224
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001007098
cbriggsae	.((((...((..((...(((((.((((((.((..((.((.((((...((((.((.......)).)))).)))).)).)).)).)))))))))))...))..)).)))).	0.800 -28.10

cbriggsae

chromosome:chrII:11395383:11395491:-1

Same_strand|Intronic_non-coding|NM_064152|ash-2 ## Same_strand|Intronic_coding|NM_001027224|sre-34 ## {Repeats: no}

block839 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.555	no	no	0.52/0.52	23/23/1.00	0.0	0.0	1	0	1	0	24	2	3arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------CGGAGUC---------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------GCGGAGTCTTTTCCATGGTTGCA------------------------	23	1
cbriggsae	ttgggagtactgtagttggcactgtcgatgtttcagggagcactgtagaagtttGCGGAGTCTTTTCCATGGTTGCActgaaaaaaactaaaacttctgac
	*****************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	---------------------------------------------------------------------------------------------------------------	NM_001044671
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	---------------------------------------------------------------------------------------------------------------	NM_177366
	---------------------------------------------------------------------------------------------------------------	NM_008091
	---------------------------------------------------------------------------------------------------------------	NM_001084509
	---------------------------------------------------------------------------------------------------------------	NM_061557
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020988
cbriggsae	((((((((....(((((.......(((.(((.(((((((((.((((((....)))))).))...)))).)))..))).)))....)))))..)))))))).	0.550 -22.30

cbriggsae

chromosome:chrII:13687271:13687371:-1

Same_strand|Intronic_non-coding|NM_001122953|Nfia ## Opposite_strand|Intronic_non-coding|NM_001044671|MAF ## Opposite_strand|Intronic_coding|NM_061557|rog-1 ## {Repeats: no}

block1176 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.450	no	no	0.41/0.41	22/22/1.00	0.0	0.0	2	0	1	0	11	10	5arm	2	nd	0.41	3	2	1	na	na

		reads	miRBase family seed
seed	------------AAUGGAU----------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-----------GAATGGATGAGGTTCTGGATAT--------------------------------------------------------------	22	2
cbriggsae	ttttttcttttGAATGGATGAGGTTCTGGATATtgatggcgtgatgaagcgggtaaattctccgatctattccaacgttcggaaaaagggaggag
	***********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085229
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062047
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062035
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066275
cbriggsae	((((..(((((...((((((.((...(((((...((..((.((......)).))....))....)))))..))..))))))..)))))..)))).	0.760 -20.60

cbriggsae

chromosome:chrII_random:1800642:1800736:-1

Same_strand|Intronic_non-coding|NM_001085229|ATDCI1 ## Same_strand|Intronic_coding|NM_062035|lin-8 ## {Repeats: no}

block1193 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.107	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	29	1	3arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AUUCCAA------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------GATTCCAAGGCTTACACAGGT-----------------------------	21	1
cbriggsae	gggtcttgtagcccgctggcttctcgttctcctggtctttggtaccttcatctttaGATTCCAAGGCTTACACAGGTgattgcttttcagactggccgatagatcc
	**********************************************************************************************************
cbriggsae	((((((....(((..((((.....((.((.((((((((((((...((........))...))))))...)).)))).)).))....))))...)))....))))))	0.990 -28.90

cbriggsae

chromosome:chrII_random:2250345:2250450:-1

{Repeats: no}

block1628 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.248	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	6	0	3arm	8	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------UUUGAAU------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------GTTTGAATGCAGGCCGTTGG------	20	1
cbriggsae	acgcttcaaactggtgacgttggcgggaGTTTGAATGCAGGCCGTTGGggtgta
	******************************************************
	----------------------------------------------------------------	NM_061066
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027762
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067650
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060557
	----------------------------------------------------------------	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	----------------------------------------------------------------	NM_075513
	----------------------------------------------------------------	NM_071129
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071129
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075409
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172925
	----------------------------------------------------------------	NM_001129219
	----------------------------------------------------------------	NM_001027762
	----------------------------------------------------------------	NM_001090026
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079600
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172541
	----------------------------------------------------------------	NM_067787
	----------------------------------------------------------------	NM_067659
	----------------------------------------------------------------	NM_075459
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061965
	----------------------------------------------------------------	NM_070558
	----------------------------------------------------------------	NM_064510
	----------------------------------------------------------------	NM_072208
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065010
	----------------------------------------------------------------	NM_065286
	----------------------------------------------------------------	NM_077859
	----------------------------------------------------------------	NM_001129266
cbriggsae	((((..(((...(((..(((((((....)))..))))...))).)))..)))).	0.850 -14.90

cbriggsae

chromosome:chrIII:1824437:1824490:1

Opposite_strand|Intronic_non-coding|NM_061066|K03D10.3 ## Same_strand|Intronic_coding|NM_001027762|smr-1 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_075513|ZC15.5 ## {Repeats: no}

block1758 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.122	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	7	21	5arm	3	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	--------UUGAAAA------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------ATTGAAAATCGGTCAACGCAT-----------------------------------------------------------------------------------	21	1
cbriggsae	tttaaaaATTGAAAATCGGTCAACGCATgccggagttatggtccattgaaaatcgaaaaatcgatgcatcgtaaaagggttgtaaacgatcggaattgtcatcatttaaat
	***************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001092591
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177186
	-------------------------------------------------------------------------------------------------------------------------	NM_001030661
	-------------------------------------------------------------------------------------------------------------------------	NM_001027534
	-------------------------------------------------------------------------------------------------------------------------	NM_001027535
	-------------------------------------------------------------------------------------------------------------------------	NM_066897
cbriggsae	((((((...(((...((((((...(((.(((....(((((((.((((((...........)))))).)))))))...))))))....)))))).....)))...)))))).	0.960 -22.70

cbriggsae

chromosome:chrIII:8639213:8639323:1

Same_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Opposite_strand|Intronic_non-coding|NM_001030661|SETD1B ## {Repeats: no}

block1797 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.376	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	17	16	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------AAGGAUU-------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------GAAGGATTACAAGACGGGAGAG-----------------	22	1
cbriggsae	tcctttgatccatgccctctggtttactgtagtttcggatgtcgattcttcgagaagcgaatccacgttggaagGAAGGATTACAAGACGGGAGAGgggcatccatgctggga
	*****************************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------------	NM_000209
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170975
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027762
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007723
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011571
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001056446
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027705
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029059
	---------------------------------------------------------------------------------------------------------------------------	NM_075282
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_013665
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010466
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068079
	---------------------------------------------------------------------------------------------------------------------------	NM_075402
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065139
	---------------------------------------------------------------------------------------------------------------------------	NM_075413
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001025933
	---------------------------------------------------------------------------------------------------------------------------	NM_065455
	---------------------------------------------------------------------------------------------------------------------------	NM_067633
cbriggsae	((((.......(((((((((.((((..(((((((((.(((((.(((((..........))))).))))).))......))))))))))).)))...)))))).......))))	0.870 -32.84

cbriggsae

chromosome:chrIII:10526792:10526904:1

Opposite_strand|Intronic_non-coding|NM_000209|PDX1 ## Same_strand|Intronic_non-coding|NM_170975|C33C12.10 ## Same_strand|Intronic_coding|NM_007723|Cnga1 ## {Repeats: no}

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other hairpins:

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miR-Intess™

block347 [novel_nonpairedHIGH]

block387 [novel_nonpairedHIGH]

block632 [novel_nonpairedHIGH]

block781 [novel_nonpairedHIGH]

block839 [novel_nonpairedHIGH]

block1176 [novel_nonpairedHIGH]

block1193 [novel_nonpairedHIGH]

block1628 [novel_nonpairedHIGH]

block1758 [novel_nonpairedHIGH]

block1797 [novel_nonpairedHIGH]