miR-Intess™

other hairpins

novel_Multihit_nonpairedHIGH_bulgeHIGH (16 loci)

block361 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.019

no

no

0.29/0.29

21/21/1.00

0.0

0.0

1

0

1

0

19

15

3arm

12

nd

0.43

5

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	------------------------------------------------------------------------------------------------------------------------------	NM_176035
	------------------------------------------------------------------------------------------------------------------------------	NM_205985
	------------------------------------------------------------------------------------------------------------------------------	NM_205986
	------------------------------------------------------------------------------------------------------------------------------	NM_001011629
	------------------------------------------------------------------------------------------------------------------------------	NM_102365
	------------------------------------------------------------------------------------------------------------------------------	NM_001084127
	------------------------------------------------------------------------------------------------------------------------------	NM_001009899
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010029
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrI:8192559:8192674:1

Same_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Opposite_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_010029|Ddx4 ## {Repeats: no}

block496 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.339

no

no

0.55/0.55

20/20/1.00

0.0

0.0

1

0

1

0

8

20

3arm

49

nd

0.40

4

1

1

na

na

		reads	miRBase family seed
seed	--------------------------------------------------------------------CGUUCGU--------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------GCGTTCGTGGTGTAATGGTC--------	20	1
cbriggsae	ccagcgcgacaacgccgccgcgcccctcccttcttcattaccgccttgcgtcccttctcctcccggcGCGTTCGTGGTGTAATGGTCagcatgga
	***********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001012534
	---------------------------------------------------------------------------------------------------------	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_013672
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214128
cbriggsae	(((((..(((.(((((((((((((.................(((...)))..............))))))...)))))))....))).)).))).	0.980 -29.18

cbriggsae

chromosome:chrI_random:2959653:2959747:-1

Same_strand|Intronic_non-coding|NM_001012534|TOB2 ## Opposite_strand|Intronic_non-coding|NM_075505|psa-1 ## {Repeats: no}

block1444 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.019

no

no

0.29/0.29

21/21/1.00

0.0

0.0

1

0

1

0

19

15

3arm

12

nd

0.43

5

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_111620
	------------------------------------------------------------------------------------------------------------------------------	NM_001088088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001066926
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105288
	------------------------------------------------------------------------------------------------------------------------------	NM_007393
	------------------------------------------------------------------------------------------------------------------------------	NM_122291
	------------------------------------------------------------------------------------------------------------------------------	NM_067241
	------------------------------------------------------------------------------------------------------------------------------	NM_001021511
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrIII:8046363:8046478:-1

Same_strand|Intronic_coding|NM_111620|AtRABA5b ## Opposite_strand|Intronic_non-coding|NM_001088088|LOC397919 ## Opposite_strand|Intronic_coding|NM_001021511|cdk9 ## {Repeats: no}

block1445 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.019

no

no

0.29/0.29

21/21/1.00

0.0

0.0

1

0

1

0

19

15

3arm

12

nd

0.43

5

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_011448
	------------------------------------------------------------------------------------------------------------------------------	NM_201507
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_111620
	------------------------------------------------------------------------------------------------------------------------------	NM_001088088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001066926
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004521
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001020307
	------------------------------------------------------------------------------------------------------------------------------	NM_007393
	------------------------------------------------------------------------------------------------------------------------------	NM_122291
	------------------------------------------------------------------------------------------------------------------------------	NM_001128112
	------------------------------------------------------------------------------------------------------------------------------	NM_067241
	------------------------------------------------------------------------------------------------------------------------------	NM_001129943
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039838
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrIII:8099614:8099729:-1

Opposite_strand|Intronic_non-coding|NM_011448|Sox9 ## Same_strand|Intronic_coding|NM_111620|AtRABA5b ## Same_strand|Intronic_non-coding|NM_004521|KIF5B ## Opposite_strand|Intronic_coding|NM_001128112|ci-arfgap-2 ## {Repeats: no}

block1499 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.026

no

no

0.29/0.29

21/21/1.00

0.0

0.0

1

0

1

0

19

15

3arm

12

nd

0.43

5

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatgcactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022613
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009322
	------------------------------------------------------------------------------------------------------------------------------	NM_065267
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199029
	------------------------------------------------------------------------------------------------------------------------------	NM_020180
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057345
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169733
	------------------------------------------------------------------------------------------------------------------------------	NM_204893
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199449
	------------------------------------------------------------------------------------------------------------------------------	NM_153693
	------------------------------------------------------------------------------------------------------------------------------	NM_133991
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009517
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109884
	------------------------------------------------------------------------------------------------------------------------------	NM_001025087
	------------------------------------------------------------------------------------------------------------------------------	NM_001025088
	------------------------------------------------------------------------------------------------------------------------------	NM_001025089
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001128181
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027712
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrIII:9783456:9783571:-1

Same_strand|Intronic_coding|NM_001022613|SPBC215.13 ## Same_strand|Intronic_non-coding|NM_009322|Tbr1 ## Opposite_strand|Intronic_non-coding|NM_065267|R148.2 ## {Repeats: no}

block1742 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.019

no

no

0.29/0.29

21/21/1.00

0.0

0.0

1

0

1

0

19

15

3arm

12

nd

0.43

5

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011448
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201507
	------------------------------------------------------------------------------------------------------------------------------	NM_111620
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088088
	------------------------------------------------------------------------------------------------------------------------------	NM_001066926
	------------------------------------------------------------------------------------------------------------------------------	NM_001020307
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_122291
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129943
	------------------------------------------------------------------------------------------------------------------------------	NM_001039838
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_168412
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_168413
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrIII:8089591:8089706:1

Same_strand|Intronic_non-coding|NM_011448|Sox9 ## Opposite_strand|Intronic_coding|NM_111620|AtRABA5b ## {Repeats: no}

block1743 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.111

no

no

0.29/0.29

21/21/1.00

0.0

0.0

1

0

1

0

19

13

3arm

12

nd

0.43

5

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtataataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011448
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201507
	------------------------------------------------------------------------------------------------------------------------------	NM_111620
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088088
	------------------------------------------------------------------------------------------------------------------------------	NM_001066926
	------------------------------------------------------------------------------------------------------------------------------	NM_004521
	------------------------------------------------------------------------------------------------------------------------------	NM_001020307
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_122291
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001128112
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129943
	------------------------------------------------------------------------------------------------------------------------------	NM_001039838
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((....(((((..........)))))....))))))))))))....))))).........)))..)).))))))	0.890 -24.07

cbriggsae

chromosome:chrIII:8104428:8104543:1

Same_strand|Intronic_non-coding|NM_011448|Sox9 ## Opposite_strand|Intronic_coding|NM_111620|AtRABA5b ## Opposite_strand|Intronic_non-coding|NM_004521|KIF5B ## Same_strand|Intronic_coding|NM_001128112|ci-arfgap-2 ## {Repeats: no}

block1745 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.033

no

no

0.29/0.29

21/21/1.00

0.0

0.0

1

0

1

0

19

15

3arm

12

nd

0.43

5

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaattaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_001012682
	------------------------------------------------------------------------------------------------------------------------------	NM_001086665
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001092591
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020453
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_116317
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011448
	------------------------------------------------------------------------------------------------------------------------------	NM_111620
	------------------------------------------------------------------------------------------------------------------------------	NM_001006108
	------------------------------------------------------------------------------------------------------------------------------	NM_001091707
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_113459
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((..(((.(((((((....)))))))))).))))))))))))....))))).........)))..)).))))))	0.900 -28.87

cbriggsae

chromosome:chrIII:8266668:8266783:1

Opposite_strand|Intronic_coding|NM_001012682|RPLP0 ## Same_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Same_strand|Intronic_coding|NM_116317|ECA2 ## {Repeats: no}

block1750 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.033

no

no

0.29/0.29

21/21/1.00

0.0

0.0

1

0

1

0

19

15

3arm

12

nd

0.43

5

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaattaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_001012682
	------------------------------------------------------------------------------------------------------------------------------	NM_001086665
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001092591
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011448
	------------------------------------------------------------------------------------------------------------------------------	NM_001114175
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((..(((.(((((((....)))))))))).))))))))))))....))))).........)))..)).))))))	0.900 -28.87

cbriggsae

chromosome:chrIII:8439520:8439635:1

Opposite_strand|Intronic_coding|NM_001012682|RPLP0 ## Same_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Opposite_strand|Intronic_non-coding|NM_001114175|GABRA2 ## {Repeats: no}

block4698 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.546

no

no

0.52/0.52

21/21/1.00

0.0

0.0

1

0

1

0

29

8

3arm

22

nd

0.52

4

1

1

na

na

		reads	miRBase family seed
seed	---------------------------------------------------------------------UUGUUGU------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------CTTGTTGTCAGCTGGGACCTT-----------------------------	21	1
cbriggsae	ctgatgtgagtgaagtcctctcgattatgtgttctggcttcgaactgttggccatcaccttggagaatCTTGTTGTCAGCTGGGACCTTctttgcatatcgttctccactgatgtgag
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029869
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020252
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133906
	--------------------------------------------------------------------------------------------------------------------------------	NM_068376
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020297
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027016
	--------------------------------------------------------------------------------------------------------------------------------	NM_079863
	--------------------------------------------------------------------------------------------------------------------------------	NM_170535
	--------------------------------------------------------------------------------------------------------------------------------	NM_170536
	--------------------------------------------------------------------------------------------------------------------------------	NM_078585
	--------------------------------------------------------------------------------------------------------------------------------	NM_167331
	--------------------------------------------------------------------------------------------------------------------------------	NM_167332
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087595
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003262
	--------------------------------------------------------------------------------------------------------------------------------	NM_078127
	--------------------------------------------------------------------------------------------------------------------------------	NM_078127
	--------------------------------------------------------------------------------------------------------------------------------	NM_078127
cbriggsae	((.((((.((((.((......(((.(((((((((..(((.(((...(((..(((......)))..)))....)))..)))..)))).......))))))))..)).)))).)))).))	0.870 -29.11

cbriggsae

chromosome:chrX:17979668:17979785:-1

Same_strand|Intronic_non-coding|NM_029869|Zkscan1 ## Opposite_strand|Intronic_coding|NM_068376|ZK354.3 ## Same_strand|Intronic_coding|NM_027016|Sec62 ## Opposite_strand|Intronic_non-coding|NM_079863|dco ## {SimpF: trf}

Back to summary page

other hairpins:

Page 1

Jump 10 pages back

Previous page

Page 44

Next page

Jump 10 pages forward

Page 70