other hairpins
block841 [novel_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.257 | no | no | 0.61/0.61 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 21 | -3 | 3arm_loop | 1 | nd | 0.22 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------UCCAUGC------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------ATCCATGCGTGGCTGGTGGTTGG--------------------- | 23 | 1 | |
| cbriggsae | agttgttttcgcggcaatgctcccggaacatcaggctatccatgATCCATGCGTGGCTGGTGGTTGGggtgtcgtcatcctccagctc | ||
| **************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001011629 | ||
| -------------------------------------------------------------------------------------------------- | NM_001044671 | ||
| -------------------------------------------------------------------------------------------------- | NM_177366 | ||
| -------------------------------------------------------------------------------------------------- | NM_001084509 | ||
| -------------------------------------------------------------------------------------------------- | NM_061557 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_020988 | ||
| cbriggsae | (((((.....((((((.....(((.((.(((((.(((((.((((...)))).)))))))))).)).))))))))).......))))). | 0.980 -28.60 |
| cbriggsae | chromosome:chrII:13783390:13783477:-1 | Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_001044671|MAF ## Opposite_strand|Intronic_coding|NM_061557|rog-1 ## {Repeats: no} |
block1084 [novel_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.163 | no | no | 0.45/0.45 | 22/22/1.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 12 | -1 | 5arm_loop | 1 | nd | 0.18 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------AGCUCAA---------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------GAGCTCAAAGTCATCGTATTCC-------------------------------------------- | 22 | 3 | |
| cbriggsae | ggctctgataagGAGCTCAAAGTCATCGTATTCCacgtcatcaatcgaatacggtaggtttagattcttttcgttgtc | ||
| ****************************************************************************** | |||
| ---------------------------------------------------------------------------------------- | NM_001122953 | ||
| ---------------------------------------------------------------------------------------- | NM_001011629 | ||
| ---------------------------------------------------------------------------------------- | NM_001122952 | ||
| ---------------------------------------------------------------------------------------- | NM_010905 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_152660 | ||
| ---------------------------------------------------------------------------------------- | NM_199214 | ||
| cbriggsae | (((..(((.((((((.((.((((((((((((((.............))))))))).))))).)))))))))))..))) | 0.910 -16.82 |
| cbriggsae | chromosome:chrII:13445120:13445197:1 | Opposite_strand|Intronic_non-coding|NM_001122953|Nfia ## Same_strand|Intronic_non-coding|NM_152660|FAM76A ## Opposite_strand|Intronic_coding|NM_199214|col1a1 ## {Repeats: no} |
block1941 [novel_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.35/0.35 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 36 | -1 | 3arm | 1 | nd | 0.20 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------ACAUUGG------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------TACATTGGCAGGATATACAT------------------------------------ | 20 | 1 | |
| cbriggsae | attccagtttcattaaggtttcaagtttatgtggtaatctgacaaagtaaTACATTGGCAGGATATACATataaaaaaactaccatgactcgaattttatggaatc | ||
| ********************************************************************************************************** | |||
| -------------------------------------------------------------------------------------------------------------------- | NM_075433 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_075433 | ||
| cbriggsae | ((((((..(((.(((.(((......(((((((((((.((((.(((.((...)).))).)))).))).))))))))......))).)))...))).....)))))). | 0.980 -21.00 |
| cbriggsae | chromosome:chrIV:1366714:1366819:-1 | Opposite_strand|Intronic_coding|NM_075433|srt-45 ## Same_strand|Intronic_coding|NM_075433|srt-45 ## {Repeats: no} |
block2343 [novel_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.177 | no | no | 0.43/0.43 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | -2 | 3arm_loop | 1 | nd | 0.26 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------UUGAAGA---------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------GTTGAAGAGAAATGAGAGCTTCG------------- | 23 | 1 | |
| cbriggsae | tctttattttcggaagatgttcatttttacggttcgcgGTTGAAGAGAAATGAGAGCTTCGgcgagttggagag | ||
| ************************************************************************** | |||
| ------------------------------------------------------------------------------------ | NM_079659 | ||
| ------------------------------------------------------------------------------------ | NM_206502 | ||
| ------------------------------------------------------------------------------------ | NM_169746 | ||
| ------------------------------------------------------------------------------------ | NM_169747 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001095500 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001024205 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001077467 | ||
| ------------------------------------------------------------------------------------ | NM_080629 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_201478 | ||
| ------------------------------------------------------------------------------------ | NM_080630 | ||
| ------------------------------------------------------------------------------------ | NM_067556 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001078490 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001093393 | ||
| ------------------------------------------------------------------------------------ | NM_060547 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001080495 | ||
| ------------------------------------------------------------------------------------ | NM_001854 | ||
| ------------------------------------------------------------------------------------ | NM_059112 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_002069 | ||
| cbriggsae | ((((((..((((((((...(((((((((....((((....)))).)))))))))..))))..)))).)))))). | 0.950 -17.70 |
| cbriggsae | chromosome:chrIV:14894598:14894671:-1 | Opposite_strand|Intronic_non-coding|NM_079659|cher ## Same_strand|Intronic_coding|NM_001095500|LOC496349 ## Same_strand|Intronic_non-coding|NM_001024205|Nufip2 ## Opposite_strand|Intronic_coding|NM_080629|COL11A1 ## {Repeats: no} |
block2557 [novel_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.400 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 16 | -1 | 5arm_loop | 1 | nd | 0.29 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------UUUCGCU-------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------TTTTCGCTTGACGGTCTCAGT------------------------------------------- | 21 | 2 | |
| cbriggsae | attttggatcgcttgtTTTTCGCTTGACGGTCTCAGTatacaacattttcagacatcaaaaatcggaaaaatctgaaatc | ||
| ******************************************************************************** | |||
| cbriggsae | ((((..(((......(((((((.((((..((((.((...........)).)))).))))....))))))))))..)))). | 0.850 -11.10 |
| cbriggsae | chromosome:chrIV:4095646:4095725:1 | {Repeats: no} |
block2656 [novel_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.026 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 4 | 0 | 1 | 0 | 7 | -2 | 3arm_loop | 1 | nd | 0.29 | 2 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------UUCUUAU-------------------- | 4 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------TTTCTTATGACTTCTCAGTGG------- | 21 | 4 | |
| cbriggsae | agtttttcccagtgggattctgagatattcagTTTCTTATGACTTCTCAGTGGtaatgac | ||
| ************************************************************ | |||
| ---------------------------------------------------------------------- | NM_066961 | ||
| cbriggsae | .(((.((.(((.(((((.(((((((.........))))).))..))))).))).)).))) | 0.980 -15.10 |
| cbriggsae | chromosome:chrIV:8486168:8486227:1 | Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no} |
block2910 [novel_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.307 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 12 | -3 | 3arm_loop | 1 | nd | 0.25 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------AUGAUAC------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------TATGATACAACTTTTGGAAG------------ | 20 | 1 | |
| cbriggsae | ttgggaaatgtttatttaaaaactgttcttgcaaTATGATACAACTTTTGGAAGacaaattttcaa | ||
| ****************************************************************** | |||
| cbriggsae | .((..((.(((((.(((((((..(((((.........)).)))..))))))))))))..))..)). | 0.850 -8.80 |
| cbriggsae | chromosome:chrIV_random:536809:536874:1 | {Repeats: no} |
block3354 [novel_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.504 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 29 | -2 | 5arm_loop | 3 | nd | 0.14 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------GUGUUGG--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------AGTGTTGGCATTTTTCGTTGT-------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | cggggttttgagcagcccgcatctcattcAGTGTTGGCATTTTTCGTTGTgaagcaaatgaattgacaggtgccggcggagcagaaatttgatgagaagagctggaccacgg | ||
| **************************************************************************************************************** | |||
| cbriggsae | ((.((((.....((((.....(((((.(((((((((((((((((((((........)))))).....)))))))))))..........)))))))))...)))))))).)). | 0.550 -29.60 |
| cbriggsae | chromosome:chrUn:7249713:7249824:-1 | {Repeats: no} |
block3418 [novel_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.477 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 29 | -2 | 5arm_loop | 3 | nd | 0.14 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------GUGUUGG--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------AGTGTTGGCATTTTTCGTTGT-------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | ctgggttttgagcagcccgcatctcattcAGTGTTGGCATTTTTCGTTGTgaagcaaatgaattgacaggtgccggcggagcagaaatttgatgagaagagctggaccacgg | ||
| **************************************************************************************************************** | |||
| cbriggsae | (((((((.....((((.....(((((.(((((((((((((((((((((........)))))).....)))))))))))..........)))))))))...)))))))).))) | 0.520 -29.30 |
| cbriggsae | chromosome:chrUn:2251955:2252066:1 | {Repeats: no} |
block3462 [novel_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.477 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 29 | -2 | 5arm_loop | 3 | nd | 0.14 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------GUGUUGG--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------AGTGTTGGCATTTTTCGTTGT-------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | ctgggttttgagcagcccgcatctcattcAGTGTTGGCATTTTTCGTTGTgaagcaaatgaattgacaggtgccggcggagcagaaatttgatgagaagagctggaccacgg | ||
| **************************************************************************************************************** | |||
| cbriggsae | (((((((.....((((.....(((((.(((((((((((((((((((((........)))))).....)))))))))))..........)))))))))...)))))))).))) | 0.520 -29.30 |
| cbriggsae | chromosome:chrUn:3863542:3863653:1 | {Repeats: no} |
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©2008 InteRNA Genomics B.V.