miR-Intess™

other hairpins

novel_loopOverlap (12 loci)

block3544 [novel_loopOverlap]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.071

no

no

0.30/0.30

20/20/1.00

0.0

0.0

1

0

1

0

29

-2

5arm_loop

5

nd

0.30

3

1

1

na

na

		reads	miRBase family seed
seed	------------------------------AAAGUUU---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------GAAAGTTTGGTAAAAGAAAG---------------------------------------------------------	20	1
cbriggsae	aagaggaaaatagagtgattggtattcatGAAAGTTTGGTAAAAGAAAGcattttccttcagatttacagtgacttttctttcacgtcactgatattttctttttc
	**********************************************************************************************************
cbriggsae	((((((((((((.(((((((((.......(((((((..(((((.(((..........)))...)))))...)))))))...))).))))))..)))))))))))).	0.470 -22.40

cbriggsae

chromosome:chrUn:5244846:5244951:1

{Repeats: no}

novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH (10 loci)

block588 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.330

no

no

0.44/0.44

18/18/0.00

0.0

0.0

1

0

1

0

28

-2

5arm_loop

2

nd

0.39

4

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------UUGUAAA--------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------GTTGTAAAGTGTCTCCTG----------------------------------------------------	18	1
cbriggsae	tattttgtttttcacatttgatcagtttGTTGTAAAGTGTCTCCTGaagggtagagttcttacagcaatgatatgctcgtatttgacctgtaaaatat
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005457
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058490
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001104235
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001104236
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206458
cbriggsae	(((((((....(((.((.(((.((..(((((((((....(((((.....)).)))....))))))))).....)).))).)).)))....))))))).	0.840 -17.70

cbriggsae

chromosome:chrII:1963912:1964009:-1

Same_strand|Intronic_coding|NM_001005457|adsl ## Same_strand|Intronic_non-coding|NM_058490|Y71G12B.8 ## {Repeats: no}

block1477 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.546

no

no

0.47/0.47

19/19/0.00

0.0

0.0

1

0

1

0

34

-1

5arm_loop

2

nd

0.37

4

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------AAGAGUA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------GAAGAGTATGTGATTGGGC-------------------------------------------------------------------	19	1
cbriggsae	gcaatcgaatcgttagtgaacatggctggcataaGAAGAGTATGTGATTGGGCctgcaacttatttcgaaatttccaaccaaattttcttcgcttacagtcgtgtctggttctgtgagcg
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066606
cbriggsae	((.((.((((((.....((.((((((((......((((((....((.(((((.....................))))).))....)))))).....)))))))))))))))).))..)).	0.980 -27.90

cbriggsae

chromosome:chrIII:8774415:8774534:-1

Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## Same_strand|Intronic_coding|NM_066606|lin-12 ## {Repeats: no}

block2705 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.231

no

no

0.63/0.63

19/19/0.00

0.0

0.0

1

0

1

0

12

-3

5arm_loop

1

nd

0.53

4

1

1

na

na

		reads	miRBase family seed
seed	-------------GCAGUGG--------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------TGCAGTGGGATGGTGCAGG---------------------------------	19	1
cbriggsae	caattagtccggTGCAGTGGGATGGTGCAGGagcagcacttgaccacactttttgacttttttg
	****************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007732
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007733
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009928
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_153393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032518
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198747
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007729
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009936
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130445
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205334
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080681
	--------------------------------------------------------------------------	NM_182461
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101980
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029838
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021760
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007735
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007731
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003090
	--------------------------------------------------------------------------	NM_001022613
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080645
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_025685
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001856
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001856
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033641
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201478
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199473
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201478
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214466
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001045014
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001847
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001080091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016919
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001100911
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134452
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009928
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152890
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007733
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_173465
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	--------------------------------------------------------------------------	NM_011448
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009932
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007738
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007729
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003187
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001002979
	--------------------------------------------------------------------------	NM_141224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205305
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001002979
	--------------------------------------------------------------------------	NM_078712
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001006951
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014971
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034039
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001046199
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087652
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093204
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105433
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203905
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005153
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014971
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095843
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097192
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105288
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204164
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001002979
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001002980
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003187
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031818
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079401
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093327
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205021
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214510
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204164
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205021
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001046584
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097192
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095843
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087652
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034039
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001080575
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_078485
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009926
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080680
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109172
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080595
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_024474
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134452
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032518
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198711
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080679
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199214
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007732
	--------------------------------------------------------------------------	NM_068185
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001100911
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004370
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007729
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133457
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152888
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001100911
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_181636
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001853
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029838
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152888
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109991
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172604
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174634
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027770
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031163
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007730
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001853
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001115065
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113515
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_030582
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000494
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000493
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000493
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001025721
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001080091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001080091
	--------------------------------------------------------------------------	NM_001004090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001851
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001127025
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001135
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198721
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198721
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130275
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130548
cbriggsae	(((..((((.......((((...(((((.......)))))...)))).......))))...)))	1.000 -16.64

cbriggsae

chromosome:chrIV:9962025:9962088:1

Same_strand|Intronic_coding|NM_033381|COL4A5 ## Opposite_strand|Intronic_coding|NM_182461|set-33 ## Same_strand|Intronic_non-coding|NM_025685|Col27a1 ## Opposite_strand|Intronic_non-coding|NM_011448|Sox9 ## {Repeats: no}

block2998 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.175

no

no

0.42/0.42

19/19/0.00

0.0

0.0

1

0

1

0

21

-4

3arm_loop

1

nd

0.58

4

1

1

na

na

		reads	miRBase family seed
seed	-------------------------------------ACUUCUA--------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------CACTTCTACAAATGCGTCT---------------------	19	1
cbriggsae	tcaggatttttcaggaaatcaacggatgatcagattCACTTCTACAAATGCGTCTagccattgcaaaaatactgaa
	****************************************************************************
cbriggsae	((((.(((((((((.......(((.((....(((......)))....)).))).......))).)))))).)))).	0.860 -12.94

cbriggsae

chromosome:chrUn:1282467:1282542:-1

{Repeats: no}

block3022 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.202

no

no

0.65/0.65

26/26/0.00

0.0

0.0

1

0

1

0

24

-4

5arm_loop

1

nd

0.38

5

1

1

na

na

		reads	miRBase family seed
seed	-------------------------UGUCUGG-------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------GTGTCTGGCGGTGGCTGAGTCGAACG-------------------------------------------------------	26	1
cbriggsae	gcggtttctgcgagctggctcgaaGTGTCTGGCGGTGGCTGAGTCGAACGagaaaccgatgcggccattgtgggtggtaggctggtcgctcttggcaaggatggc
	*********************************************************************************************************
cbriggsae	((.(((..(((((((.((((........((.((((((((((.((((..........)))).)))))))))).)).........))))))))...)))..))).))	0.980 -39.33

cbriggsae

chromosome:chrUn:1488237:1488341:-1

{Repeats: no}

block3446 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.460

no

no

0.50/0.50

18/18/0.00

0.0

0.0

1

0

1

0

15

-2

5arm_loop

1

nd

0.44

4

1

1

na

na

		reads	miRBase family seed
seed	----------------UAGUGGG----------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------ATAGTGGGGGTTCGTCAT------------------------------------------	18	1
cbriggsae	ctctccttaattattATAGTGGGGGTTCGTCATaagagaaacgggaaggatggagcttgttttggttgggtggga
	***************************************************************************
	-------------------------------------------------------------------------------------	NM_069515
cbriggsae	.((((((((((((..(((....((.((((((.................)))))).)))))..)))))))).))))	0.950 -14.93

cbriggsae

chromosome:chrUn:3529008:3529082:1

Opposite_strand|Intronic_non-coding|NM_069515|R11A8.7 ## {Repeats: no}

block4449 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.501

no

no

0.44/0.44

18/18/0.00

0.0

0.0

1

0

1

0

29

-3

5arm_loop

2

nd

0.67

4

1

1

na

na

		reads	miRBase family seed
seed	------------------------------CUGUUAC--------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------TCTGTTACGGTTTCCTTG----------------------------------------	18	1
cbriggsae	gtttctggaacaagttctctagaatcggcTCTGTTACGGTTTCCTTGagcggtccattccaaagtcgtcgttgaacaaaccagttgc
	***************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_153821
	-------------------------------------------------------------------------------------------------	NM_125756
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204793
	-------------------------------------------------------------------------------------------------	NM_079593
	-------------------------------------------------------------------------------------------------	NM_169386
	-------------------------------------------------------------------------------------------------	NM_176459
	-------------------------------------------------------------------------------------------------	NM_001016575
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085944
cbriggsae	((..((((.....((((....((..(((((.((....((...((......)).))....)).)))))))...))))...))))..))	0.880 -18.00

cbriggsae

chromosome:chrX:6621070:6621156:-1

Same_strand|Intronic_non-coding|NM_153821|Prrx1 ## Opposite_strand|Intronic_coding|NM_125756|HEN3 ## Opposite_strand|Intronic_non-coding|NM_079593|pros ## {Repeats: no}

block4724 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.546

no

no

0.47/0.47

19/19/0.00

0.0

0.0

1

0

1

0

34

-1

5arm_loop

2

nd

0.37

4

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------AAGAGUA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------GAAGAGTATGTGATTGGGC-------------------------------------------------------------------	19	1
cbriggsae	gcaatcgaatcgttagtgaacatggctggcataaGAAGAGTATGTGATTGGGCctgcaacttatttcgaaatttccaaccaaattttcttcgcttacagtcgtgtctggttctgtgagcg
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_203923
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001111199
	----------------------------------------------------------------------------------------------------------------------------------	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003666
cbriggsae	((.((.((((((.....((.((((((((......((((((....((.(((((.....................))))).))....)))))).....)))))))))))))))).))..)).	0.980 -27.90

cbriggsae

chromosome:chrX:18772023:18772142:-1

Opposite_strand|Intronic_non-coding|NM_203923|abcb4 ## Same_strand|Intronic_non-coding|NM_001111199|zgc:173710 ## Same_strand|Intronic_coding|NM_001003666|Zfp457 ## {Repeats: no}

block4768 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.201

no

no

0.32/0.32

19/19/0.00

0.0

0.0

1

0

1

0

40

-4

5arm_loop

1

nd

0.47

5

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------UUUUUUC------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------TTTTTTTCTTGGGCTGAAA-------------------------------------------------------	19	1
cbriggsae	agcagacaaggaagacacccgaattttttgttttgctttgTTTTTTTCTTGGGCTGAAAgaaggaaaaaaaagaagaaagtaaaaacatcactaatcggaaaaaaaaagttggc
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072416
cbriggsae	.((.(((...........((((......(((((((((((.(((((((.((...((......))..)).))))))).))))))))).)).......)))).........))).))	0.710 -17.77

cbriggsae

chromosome:chrX:19696794:19696907:-1

Same_strand|Intronic_coding|NM_072416|str-204 ## {Repeats: no}

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other hairpins:

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