other hairpins
novel_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH (2 loci)
sblock57 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.685 | no | no | 0.22/0.33 | 18/26/0.33 | 0.0 0.5 | 0.0 4.5 | 1 2 | 0 0 | 1 1 | 0 0 | 33 2 | -1 15 | 5arm_loop 3arm | 2 2 | nd nd | 0.48 0.22 | 4 4 | 3 | 1 | 0 | 23 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------UAGUAAG-------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------------------AUAGUAA--------------------- | 1 | novel |
| seed | ----------------------------------UAAAGAA---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------------ATAGTAAGGTAAGTTTTACATCGATG-- | 26 | 1 | |
| ---------------------------------TTAAAGAATTACTCCGGAGTT--------------------------------------------------------- | 21 | 1 | |
| ----------------------------------------------------------------------------------TATAGTAAGGTAAGTTTT----------- | 18 | 1 | |
| cbriggsae | aatattatataatagtattttactatatttaatTTAAAGAATTACTCCGGAGTTaacagaaaatcatacctaatctagttctTATAGTAAGGTAAGTTTTACATCGATGtt | ||
| *************************************************************************************************************** | |||
| cbriggsae | ((((((((.(((...((((((((((((..........(((((((....((.((..............))))....)))))))))))))))))))....))).)).)))))) | 0.400 -12.54 |
| cbriggsae | chromosome:chrUn:4252358:4252468:1 | {Repeats: AT_rich 1 38 1 class=Low_complexity,no} |
novel_lenNOK_multiarm_nonpairedHIGH (2 loci)
block2930 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.757 | no | no | 0.27/0.33 | 18/26/0.25 | 0.0 0.0 | 0.0 1.3 | 1 3 | 0 0 | 1 1 | 0 0 | 45 14 | -24 8 | 5arm_loop_3arm 3arm | 3 3 | nd nd | 0.46 0.39 | 4 2 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------UAUUGAG---------------------------- | 3 | novel |
| seed | ----------------------------------------------AUAAUUU------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------TTATTGAGTTCCAGTATG------------------ | 18 | 2 | |
| ---------------------------------------------AATAATTTGTGCTTTTATTGAGTTCC------------------------ | 26 | 1 | |
| -----------------------------------------------------------TTATTGAGTTCCAGTATGAATG-------------- | 22 | 1 | |
| cbriggsae | tgatatttaaatggcagtcttagcgtgaggacattaaggtagcaaAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGaagttattggttag | ||
| *********************************************************************************************** | |||
| cbriggsae | ((((.....((((((..((....((((.(((..((((...((((.((....)).))))....))))..)))..))))...)).)))))).)))). | 0.530 -14.00 |
| cbriggsae | chromosome:chrM:2945:3039:-1 | {Repeats: no} |
block3491 [novel_lenNOK_multiarm_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.757 | no | no | 0.27/0.33 | 18/26/0.25 | 0.0 0.0 | 0.0 1.3 | 1 3 | 0 0 | 1 1 | 0 0 | 45 14 | -24 8 | 5arm_loop_3arm 3arm | 3 3 | nd nd | 0.46 0.39 | 4 2 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------UAUUGAG---------------------------- | 3 | novel |
| seed | ----------------------------------------------AUAAUUU------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------TTATTGAGTTCCAGTATG------------------ | 18 | 2 | |
| ---------------------------------------------AATAATTTGTGCTTTTATTGAGTTCC------------------------ | 26 | 1 | |
| -----------------------------------------------------------TTATTGAGTTCCAGTATGAATG-------------- | 22 | 1 | |
| cbriggsae | tgatatttaaatggcagtcttagcgtgaggacattaaggtagcaaAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGaagttattggttag | ||
| *********************************************************************************************** | |||
| cbriggsae | ((((.....((((((..((....((((.(((..((((...((((.((....)).))))....))))..)))..))))...)).)))))).)))). | 0.530 -14.00 |
| cbriggsae | chromosome:chrUn:4252133:4252227:1 | {Repeats: no} |
novel_lenNOK_randfoldOK_nonpairedHIGH (2 loci)
block308 [novel_lenNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.58/0.58 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 18 | 3arm | 1 | nd | 0.31 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------UCCUGCU------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------------GTCCTGCTGGGCGAGTGGTTGTGTTT------ | 26 | 1 | |
| cbriggsae | acttctctacactccctcgccctcccctttccacacaccaacaggagggtttatctacgtccacaacgtagttgtataaacacGTCCTGCTGGGCGAGTGGTTGTGTTTgcagtc | ||
| ******************************************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_020367 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_011821 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_001079844 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_134696 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_203923 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_001086021 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001052684 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_001062761 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_001069064 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001006185 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_102566 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_113830 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001023814 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_057433 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001022024 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_102559 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_001019816 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_116080 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_125613 | ||
| ----------------------------------------------------------------------------------------------------------------------------- | NM_124024 | ||
| cbriggsae | (((.....((((.(((((((((...................(((((..((((((((((((.....))))))....))))))...)))))..))))))).))..))))....))). | 0.750 -34.80 |
| cbriggsae | chromosome:chrI:4477287:4477401:1 | Same_strand|Intronic_non-coding|NM_020367|PARP11 ## Opposite_strand|Intronic_non-coding|NM_011821|Gpc6 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Same_strand|Intronic_coding|NM_001006185|DDX55 ## {Repeats: no} |
block1165 [novel_lenNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 24 | 7 | 5arm | 1 | nd | 0.39 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------AUGAUCA-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------GATGATCACACTGTTCAA---------------------------------------------------------- | 18 | 1 | |
| cbriggsae | ggagttggcgaactgctgtttataGATGATCACACTGTTCAAgtagctctgatggggttccccgtggacggtattgttctgagcagcaggcgctagttcg | ||
| **************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_062055 | ||
| -------------------------------------------------------------------------------------------------------------- | NM_062055 | ||
| -------------------------------------------------------------------------------------------------------------- | NM_074739 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_204717 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_174951 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061898 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061996 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_062066 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_062066 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061927 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061927 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061910 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061910 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061900 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061903 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001001460 | ||
| -------------------------------------------------------------------------------------------------------------- | NM_001129182 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001129182 | ||
| cbriggsae | .((..(((((..((((((((((..((..((...((((((((...(((((.....))))).....))))))))))..)).)))))))))).)))))..)). | 0.570 -37.40 |
| cbriggsae | chromosome:chrII_random:1423398:1423497:-1 | Same_strand|Intronic_coding|NM_062055|sri-54 ## Opposite_strand|Intronic_coding|NM_062055|sri-54 ## Same_strand|Intronic_non-coding|NM_204717|ECE1 ## {Repeats: no} |
novel_lenNOK_shortStem_bulgeHIGH (2 loci)
block105 [novel_lenNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.073 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 25 | 5arm | 1 | nd | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -CAUUAGA------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| TCATTAGAGCAGATATCA-------------------------------------------------------------------------------- | 18 | 1 | |
| cbriggsae | TCATTAGAGCAGATATCAttcgtcatcgctttgtcaatgcggggcaccaacccgcatgtctagattgcagcgcaaacaagataccgtctgcgccatga | ||
| ************************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------------ | NM_026450 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001011629 | ||
| ------------------------------------------------------------------------------------------------------------ | NM_020367 | ||
| ------------------------------------------------------------------------------------------------------------ | NM_177350 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_011821 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001079844 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_134696 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_203923 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001086021 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_113830 | ||
| ------------------------------------------------------------------------------------------------------------ | NM_057433 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001019816 | ||
| ------------------------------------------------------------------------------------------------------------ | NM_010568 | ||
| cbriggsae | ((((....(((((((((.((.((...((((..(((.(((((((.......))))))).....)))...))))...)))))))...))))))...)))) | 0.830 -27.70 |
| cbriggsae | chromosome:chrI:4381170:4381267:-1 | Opposite_strand|Intronic_non-coding|NM_026450|Zfp169 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_coding|NM_057433|usp ## {Repeats: no} |
block2997 [novel_lenNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.425 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 16 | 3arm | 1 | nd | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------GUCCGUG------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------------GGTCCGTGGTCCAAAGAT-- | 18 | 1 | |
| cbriggsae | ggcttcgttccacaggatttcacttctccgttgatagaatctcacagtgcagaattgttcGGTCCGTGGTCCAAAGATca | ||
| ******************************************************************************** | |||
| cbriggsae | (((((....((((.(((((.((.((((.(((((...........))))).)))).))...)))))))))....))).)). | 0.800 -15.70 |
| cbriggsae | chromosome:chrUn:1256412:1256491:-1 | {Repeats: no} |
novel_randfoldOK_nonpairedHIGH (2 loci)
block2423 [novel_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.62/0.62 | 21/21/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 27 | 5 | 5arm | 1 | nd | 0.48 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------CCAAUGC------------------------------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------TCCAATGCTCGGTCACCGTGG----------------------------------------------------------- | 21 | 2 | |
| cbriggsae | tcctcttccatcccatacctcatttatTCCAATGCTCGGTCACCGTGGcgattttcaaggtcaccttatgtgaaaagaatggttaagtggggggggggggggggggt | ||
| *********************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001090906 | ||
| --------------------------------------------------------------------------------------------------------------------- | NM_064155 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_113688 | ||
| cbriggsae | (((((..((.((((...(((((((((..(((...((...((((...((.((((.....)))).))....))))..))..))).))))))))).))))))..))))). | 0.650 -43.70 |
| cbriggsae | chromosome:chrIV:1825441:1825547:1 | Same_strand|Intronic_non-coding|NM_001090906|EEF1D ## Opposite_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Same_strand|Intronic_coding|NM_113688|AT3G27720 ## {Repeats: no} |
block2967 [novel_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.29/0.29 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 7 | 29 | 5arm | 1 | nd | 0.38 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------UUUUUAC--------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------TTTTTTACAACCTGATATCTG-------------------------------------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | gtttcaaTTTTTTACAACCTGATATCTGttggaaaattatatttttcaagtttcattcattaaaaaagtgatactaacctataaaaatccacagtttcaggacgtaaatccttaagagct | ||
| ************************************************************************************************************************ | |||
| -----------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | NM_069314 | ||
| cbriggsae | ((((......(((((..(((((...(((.((((...(((((..((...(((.(((((.........))))).)))))..)))))...)))))))..)))))..))))).......)))). | 0.910 -23.82 |
| cbriggsae | chromosome:chrUn:312102:312221:-1 | Opposite_strand|Intronic_coding|NM_069314|acc-1 ## {Repeats: no} |
block4619 [novel_rep_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | DNA | 0.33/0.33 | 21/21/1.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 29 | 5 | 3arm | 1 | nd | 0.14 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------GAGGUAU------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------------------TGAGGTATTGTAAAAGCT-------------TAC----------------------------- | 21 | 3 | |
| cbriggsae | ---TTCCAATCACAACTCACGACTGGTAAGCTTGC--ACGATCACCTCTCAA-----------CCAGCAC----AATGAGTTGAGGTATTGTAAAAGCT-------------TACTGGTCGTTTTGAGCTGCAAATTGATTCGA | ||
| celegans | GAAATTTGACCGACTTAAAAAATTGAATATCTTGCCGTTCATCGACTTTAAAATACCCAAAATCAAGTTATTTAACTTCATTGAGGTATTTTAAAGTCGATGAACGGCAAGATATTGAATTTTTTTAAGTCGGTAAAATTTC-- | ||
| cbrenneri | ------------------GGAGCGCATTTGCATGC--GTCATTG-CTCAGAAG----------CTAGAAAAAGTAGCTTTTTGAGGTAT------------------------------------------GAAAATGCGCTCC | ||
| cjaponica | ----------------CCGAAACGGGCT---------GCCACCGACTCCA-------------CAAG-------ATTTGTTTGAGGTAT-----------------------------------------GGCCTACGTTTCAC | ||
| ppacificus | --------------TATCGGGGCGGAACATTT-----GTGATAAGATTCCAAA----------TAAG-------AGTGATTGGAGGTATCTTTAA----------------------AATTTTCCTCGTTGATGAATATTTGCC | ||
| * * ** * * ******* | |||
| ----- -------------------------------- --------------- ------- ------------------------- ------------------------------------- | NM_001026149 | ||
| cbriggsae | .((.(((((((.((((((((..((((((((.. (((((.(((..(((( (((.... ..)).)))))))))))))..))))) )))..)))))...))).)).....))))).)) | 0.980 -40.00 | |
| celegans | (((((((.((((((((((((((((.((((((((((((((((((((((((((((((((...(((.(((((....))))).)))..)))))))))))))))))))))))))))))))).)))))))).)))))))).))))))) | 1.000 -79.60 | |
| cbrenneri | (((((((((((.((((( .(((... ...((((( (((.......))))))))))).)))) ).))))))))))) | 0.997 -33.70 | |
| cjaponica | ..((((((.... ((((....(((.( ((.. ...)))..)))...) )))...)))))).. | 1.000 -16.20 | |
| ppacificus | ((((((((.((((.(((( ..((((...((((((. ((.. ..)).)))))).))))....) ))).)))))).)))))).......... | 0.980 -16.90 |
| cbriggsae | chromosome:chrX:15632368:15632478:-1 | Opposite_strand|Intronic_coding|NM_001026149|mes-6 ## {Repeats: no} |
| celegans | chromosome:chrI:2101818:2101959:-1 | Opposite_strand|Intronic_coding|Y37E3.15b ## {Repeats: IR3_CE 1 304 -1 class=DNA} |
| cbrenneri | chromosome:chrUn:157172316:157172466:1 | intergenic |
| cjaponica | chromosome:chrUn:143099139:143099289:1 | intergenic |
| ppacificus | chromosome:chrUn:32101699:32101784:-1 | intergenic |
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