other hairpins
novel_lenNOK_Multihit_loopOverlap (2 loci)
block3463 [novel_lenNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.238 | no | no | 0.62/0.62 | 26/26/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 6 | -3 | 3arm_loop | 12 | nd | 0.23 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------GUGGGAC------------------------ | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------GGTGGGACGGATTGAGCCATGGCGAT------ | 26 | 2 | |
| cbriggsae | agacgatcttggcgtttggttgggtttggatgtctcctGGTGGGACGGATTGAGCCATGGCGATggtttg | ||
| ********************************************************************** | |||
| cbriggsae | ((((.(((...((...(((((.((((....((((.((....)))))))))).)))))..))))).)))). | 0.680 -19.40 |
| cbriggsae | chromosome:chrUn:3903782:3903851:1 | {Repeats: no} |
novel_lenNOK_cloningOK_5varHIGH (2 loci)
block2955 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.273 | no | no | 0.38/0.42 | 19/26/0.20 | 3.0 0.0 | 1.5 0.0 | 2 3 | 0 0 | 1 1 | 0 0 | 12 8 | 1 15 | 3arm 3arm | 2 2 | nd nd | 0.22 0.37 | 2 4 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------GGCUGAG------------------- | 3 | novel |
| seed | --------------------------------------------------------UCUUUGG--------------------------- | 1 | novel |
| seed | --------------------------------------------------AAACUAU--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------AGGCTGAGTAGTAATTGAG-------- | 19 | 3 | |
| -------------------------------------------------TAAACTATCTTTGGAGGCTGAGTAGT--------------- | 26 | 1 | |
| -------------------------------------------------------ATCTTTGGAGGCTGAGTAGTAAT------------ | 23 | 1 | |
| cbriggsae | gagcaggagtaaagttgtatttaaactgaaaagatattggcagacattctaaactatctttggAGGCTGAGTAGTAATTGAGagccctca | ||
| ****************************************************************************************** | |||
| cbriggsae | (((..((.....(((((((((((..((..(((((((((((........))))..)))))))..))..)))))).))))).....))))). | 0.970 -17.60 |
| cbriggsae | chromosome:chrM:12797:12886:-1 | {Repeats: no} |
block3131 [novel_lenNOK_cloningOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.273 | no | no | 0.38/0.42 | 19/26/0.20 | 3.0 0.0 | 1.5 0.0 | 2 3 | 0 0 | 1 1 | 0 0 | 12 8 | 1 15 | 3arm 3arm | 2 2 | nd nd | 0.22 0.37 | 2 4 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------GGCUGAG------------------- | 3 | novel |
| seed | --------------------------------------------------------UCUUUGG--------------------------- | 1 | novel |
| seed | --------------------------------------------------AAACUAU--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------AGGCTGAGTAGTAATTGAG-------- | 19 | 3 | |
| -------------------------------------------------TAAACTATCTTTGGAGGCTGAGTAGT--------------- | 26 | 1 | |
| -------------------------------------------------------ATCTTTGGAGGCTGAGTAGTAAT------------ | 23 | 1 | |
| cbriggsae | gagcaggagtaaagttgtatttaaactgaaaagatattggcagacattctaaactatctttggAGGCTGAGTAGTAATTGAGagccctca | ||
| ****************************************************************************************** | |||
| cbriggsae | (((..((.....(((((((((((..((..(((((((((((........))))..)))))))..))..)))))).))))).....))))). | 0.970 -17.60 |
| cbriggsae | chromosome:chrUn:4430767:4430856:-1 | {Repeats: no} |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK (2 loci)
sblock84 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.26/0.40 | 19/21/0.56 | 0.0 0.7 | 0.0 0.7 | 3 3 | 0 0 | 1 1 | 0 0 | 10 23 | 25 12 | 5arm 3arm | 14 14 | nd nd | 0.15 0.21 | 1 3 | 9 | 1 | -13 | -14 |
| reads | miRBase family seed | ||
| seed | -----------GAAUAAG------------------------------------------------------------------------------------------------------ | 5 | novel |
| seed | -----------------------------------------------------------------------------GAAUAAG------------------------------------ | 2 | novel |
| seed | ------------AAUAAGU----------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------------------------AUAAGUA---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------GGAATAAGTAGTACCAATGG------------------------------------------------------------------------------------------ | 20 | 3 | |
| ----------------------------------------------------------------------------GGAATAAGTAGTACCAATA------------------------- | 19 | 2 | |
| ----------GGAATAAGTAGTACCAATG------------------------------------------------------------------------------------------- | 19 | 1 | |
| ------------------------------------------------------------------------------AATAAGTAGTACCAATATG----------------------- | 19 | 1 | |
| -----------GAATAAGTAGTACCAATGGT----------------------------------------------------------------------------------------- | 20 | 1 | |
| ----------GGAATAAGTAGTACCAATGGT----------------------------------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | ctacttactcGGAATAAGTAGTACCAATGGtactacttactcggaataagtagtaccaattcgatactactcactcGGAATAAGTAGTACCAATAtggtactaattactcggaataagta | ||
| ************************************************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_011978 | ||
| cbriggsae | .((((((.((.((.(((.((((((((.((((((((((((.((.((...(((((((.........)))))))...)).)).))))))))))))...)))))))).))).)).)).)))))) | 1.000 -48.10 |
| cbriggsae | chromosome:chrX:14750625:14750744:1 | Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {SimpF: trf} |
sblock85 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.26/0.40 | 19/21/0.56 | 0.0 0.7 | 0.0 0.7 | 3 3 | 0 0 | 1 1 | 0 0 | 10 23 | 25 12 | 5arm 3arm | 14 14 | nd nd | 0.15 0.21 | 1 3 | 9 | 1 | -13 | -14 |
| reads | miRBase family seed | ||
| seed | -----------GAAUAAG------------------------------------------------------------------------------------------------------ | 5 | novel |
| seed | -----------------------------------------------------------------------------GAAUAAG------------------------------------ | 2 | novel |
| seed | ------------AAUAAGU----------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------------------------AUAAGUA---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------GGAATAAGTAGTACCAATGG------------------------------------------------------------------------------------------ | 20 | 3 | |
| ----------------------------------------------------------------------------GGAATAAGTAGTACCAATA------------------------- | 19 | 2 | |
| ----------GGAATAAGTAGTACCAATG------------------------------------------------------------------------------------------- | 19 | 1 | |
| ------------------------------------------------------------------------------AATAAGTAGTACCAATATG----------------------- | 19 | 1 | |
| -----------GAATAAGTAGTACCAATGGT----------------------------------------------------------------------------------------- | 20 | 1 | |
| ----------GGAATAAGTAGTACCAATGGT----------------------------------------------------------------------------------------- | 21 | 1 | |
| cbriggsae | ctacttactcGGAATAAGTAGTACCAATGGtactacttactcggaataagtagtaccaattcgatactactcactcGGAATAAGTAGTACCAATAtggtactaattactcggaataagta | ||
| ************************************************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_011978 | ||
| cbriggsae | .((((((.((.((.(((.((((((((.((((((((((((.((.((...(((((((.........)))))))...)).)).))))))))))))...)))))))).))).)).)).)))))) | 1.000 -48.10 |
| cbriggsae | chromosome:chrX:14750991:14751110:1 | Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {SimpF: trf} |
novel_lenNOK_cloningOK_shortStem_nonpairedHIGH (2 loci)
block2378 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.821 | no | no | 0.50/0.53 | 18/19/0.00 | 0.0 | 0.0 | 7 | 0 | 1 | 0 | 1 | 37 | 5arm | 1 | 23 | 0.32 | 2 | 8 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --CCAGCUU--------------------------------------------------------------------------------------------------------------- | 8 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -TCCAGCTTCGTAGTGTCTC---------------------------------------------------------------------------------------------------- | 19 | 7 | |
| -TCCAGCTTCGTAGTGTCT----------------------------------------------------------------------------------------------------- | 18 | 1 | |
| cbriggsae | gTCCAGCTTCGTAGTGTCTCaagcataattcaaatactttcagactgaaccaacgcatgctctaattgtgattggatacggaccagattattggattttgaagaacacctacagtaagat | ||
| ************************************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_070458 | ||
| ---------------------------------------------------------------------------------------------------------------------------------- | NM_182297 | ||
| ................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | NM_070434 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | NM_070435 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | NM_137377 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | NM_166235 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | NM_166236 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | NM_166237 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | NM_206152 | ||
| ............................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | NM_135543 | ||
| cbriggsae | (((..(((..(((((((.((...((.(((((.((((.(((....(((..((((((((.........)))).))))...)))...))).))))))))).))..)))))).))))))..))) | 0.630 -19.70 |
| cbriggsae | chromosome:chrIV:1153863:1153982:1 | Same_strand|Intronic_non-coding|NM_070458|Y73F8A.24 ## Opposite_strand|Intronic_non-coding|NM_182297|B0546.4 ## Same_strand|Intronic_coding|NM_070435|Y40H7A.10 ## {Repeats: no} |
block2401 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.871 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 6 | 0 | 1 | 0 | 1 | 29 | 3arm | 1 | nd | 0.37 | 3 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------AGCUGCA------------ | 6 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------------------CAGCTGCATCGTTCGTATG- | 19 | 6 | |
| cbriggsae | ctactacaaagtgtcggatgtcggcattcgcaatacggatttctcaccatgtggtcgcttcgtcgttgcggttattgaggaCAGCTGCATCGTTCGTATGg | ||
| ***************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047559 | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_075433 | ||
| --------------------------------------------------------------------------------------------------------------- | NM_075433 | ||
| cbriggsae | .(((.((...(((.(((.((((..((.((((((((((((......(((....)))...))))).)))))))....))..)))).)))))).))..)))... | 0.570 -23.90 |
| cbriggsae | chromosome:chrIV:1399074:1399174:1 | Same_strand|Intronic_non-coding|NM_001047559|Y41E3.1 ## Same_strand|Intronic_coding|NM_075433|srt-45 ## Opposite_strand|Intronic_coding|NM_075433|srt-45 ## {Repeats: no} |
novel_lenNOK_mirtron_randfoldOK (2 loci)
block4818 [novel_lenNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.33/0.35 | 18/20/0.50 | 0.5 | 0.5 | 2 | 0 | 1 | 0 | 14 | 7 | 3arm | 1 | 2 | 0.06 | 1 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------GGAAAUG-------------------------- | 1 | novel |
| seed | ------------------------------------------------------------GAAAUGG------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------TGGAAATGGAGAAATCTTAC-------------- | 20 | 1 | |
| -----------------------------------------------------------GGAAATGGAGAAATCTTA--------------- | 18 | 1 | |
| cbriggsae | cgccgatgatgcaaaggtaagattccttcatttcatccaaaaagttggttgaattattTGGAAATGGAGAAATCTTACaggcccagacagcg | ||
| ******************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001011629 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001047939 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001013793 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_204234 | ||
| ------------------------------------------------------------------------------------------------------ | NM_178014 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_008855 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_008212 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_005327 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001011073 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001046334 | ||
| >>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001046949 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001051050 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001087431 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_214331 | ||
| ------------------------------------------------------------------------------------------------------ | NM_001005605 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_057186 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001003515 | ||
| >>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>> | NM_077183 | ||
| cbriggsae | (((...((..((....((((((((.(((((((...((((((.((((.....)))).))))))))))))).))))))))..)).))....))) | 0.980 -26.50 |
| cbriggsae | chromosome:chrX:2023869:2023960:1 | Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001047939|LOC499407 ## Opposite_strand|Intronic_non-coding|NM_178014|TUBB ## {Repeats: no} |
block4985 [novel_lenNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.31/0.31 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 11 | 3arm | 1 | 0 | 0.19 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------UUUUCUU------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------TTTTTCTTAATCTGAGCTACTTACAG------ | 26 | 1 | |
| cbriggsae | acccatagtaagttggtcaggtggaaaatgtgtatctctatgaaaaactacaTTTTTCTTAATCTGAGCTACTTACAGtgtgtc | ||
| ************************************************************************************ | |||
| ---------------------------------------------------------------------------------------------- | NM_001122952 | ||
| ---------------------------------------------------------------------------------------------- | NM_001122953 | ||
| ---------------------------------------------------------------------------------------------- | NM_010905 | ||
| ---------------------------------------------------------------------------------------------- | NM_008301 | ||
| ---------------------------------------------------------------------------------------------- | NM_014930 | ||
| ---------------------------------------------------------------------------------------------- | NM_027552 | ||
| ---------------------------------------------------------------------------------------------- | NM_022702 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_011438 | ||
| ---------------------------------------------------------------------------------------------- | NM_001075863 | ||
| ---------------------------------------------------------------------------------------------- | NM_001002012 | ||
| >>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> | NM_076603 | ||
| cbriggsae | ((.(((.(((((.((((((((((((((((((((.((.....))...)).)))))))))...)))))).)))))))).))).)). | 1.000 -22.00 |
| cbriggsae | chromosome:chrX:11267200:11267283:1 | Opposite_strand|Intronic_non-coding|NM_001122952|Nfia ## Opposite_strand|Intronic_coding|NM_014930|ZNF510 ## Same_strand|Intronic_non-coding|NM_011438|Sox12 ## Same_strand|UTR_coding|NM_076603|F22F4.1 ## {Repeats: no} |
novel_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH (2 loci)
sblock46 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.685 | no | no | 0.22/0.33 | 18/26/0.33 | 0.0 0.5 | 0.0 4.5 | 1 2 | 0 0 | 1 1 | 0 0 | 33 2 | -1 15 | 5arm_loop 3arm | 2 2 | nd nd | 0.48 0.22 | 4 4 | 3 | 1 | 0 | 23 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------UAGUAAG-------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------------------AUAGUAA--------------------- | 1 | novel |
| seed | ----------------------------------UAAAGAA---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------------ATAGTAAGGTAAGTTTTACATCGATG-- | 26 | 1 | |
| ---------------------------------TTAAAGAATTACTCCGGAGTT--------------------------------------------------------- | 21 | 1 | |
| ----------------------------------------------------------------------------------TATAGTAAGGTAAGTTTT----------- | 18 | 1 | |
| cbriggsae | aatattatataatagtattttactatatttaatTTAAAGAATTACTCCGGAGTTaacagaaaatcatacctaatctagttctTATAGTAAGGTAAGTTTTACATCGATGtt | ||
| *************************************************************************************************************** | |||
| cbriggsae | ((((((((.(((...((((((((((((..........(((((((....((.((..............))))....)))))))))))))))))))....))).)).)))))) | 0.400 -12.54 |
| cbriggsae | chromosome:chrM:2704:2814:-1 | {Repeats: no,AT_rich 1 38 -1 class=Low_complexity} |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 64 | Next page | Page 70 |
©2008 InteRNA Genomics B.V.