other hairpins
novel_Multihit_shortStem (15 loci)
block482 [novel_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.063 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 11 | 3arm | 49 | nd | 0.25 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------CGUUCGU--------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------GCGTTCGTGGTGTAATGGTC--- | 20 | 1 | |
| cbriggsae | gctgccgccgcgccaggccgctaatttatatacgacaaggcaaagaatcttgaagtgtGCGTTCGTGGTGTAATGGTCagc | ||
| ********************************************************************************* | |||
| cbriggsae | (((((((..((((((((.(((........((((..(((((.......)))))..))))))).)).))))))..))).)))) | 1.000 -26.10 |
| cbriggsae | chromosome:chrI_random:2777706:2777786:-1 | {Repeats: no} |
block1066 [novel_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.900 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 3 | 3arm | 49 | nd | 0.26 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------CGUUCGU------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------GCGTTCGTGGTGTAATGGTC | 20 | 1 | |
| cbriggsae | gacacacggttatcatcggccgccatcactctcttccctcgacGCGTTCGTGGTGTAATGGTC | ||
| *************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001030387 | ||
| cbriggsae | (((.((....(((((.((..(((..((.............)).)))..)))))))...))))) | 0.430 -11.02 |
| cbriggsae | chromosome:chrII:12768973:12769035:1 | Same_strand|Intronic_non-coding|NM_001030387|ARIH1 ## {Repeats: no} |
block1257 [novel_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.322 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 17 | 5arm | 15 | nd | 0.18 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----UUUCGAG---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---GTTTCGAGTGTGTGTGCGCCTT-------------------------------------------------------- | 22 | 1 | |
| cbriggsae | cccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaagggagagga | ||
| ********************************************************************************* | |||
| cbriggsae | ((..((((..(((((.(((((((((........((((...((....)).)))).))))))))).)))))...))))..)). | 0.580 -28.20 |
| cbriggsae | chromosome:chrII_random:2251743:2251823:1 | {Repeats: no} |
block1497 [novel_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.314 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 14 | 5arm | 15 | nd | 0.18 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----UUUCGAG-------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----GTTTCGAGTGTGTGTGCGCCTT------------------------------------------------------------------ | 22 | 1 | |
| cbriggsae | acccGTTTCGAGTGTGTGTGCGCCTTtaacctttttgtggcgagacctcaacgatagggcgcgcttgcacgaagggagagaaaattggcggg | ||
| ******************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------ | NM_001057898 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_006287 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001129211 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001129210 | ||
| cbriggsae | .((((((((..(((((.(((((((((.....((.(((.((.....)).))).)).))))))))).)))))...)))...........))))) | 0.840 -29.40 |
| cbriggsae | chromosome:chrIII:9415635:9415726:-1 | Opposite_strand|Intronic_coding|NM_001057898|Os03g0762900 ## Same_strand|Intronic_non-coding|NM_006287|TFPI ## Same_strand|Intronic_coding|NM_001129211|unc-103 ## {Repeats: no} |
block1561 [novel_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.461 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 17 | 5arm | 15 | nd | 0.23 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---UUUCGAG---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --GTTTCGAGTGTGTGTGCGCCTT-------------------------------------------------- | 22 | 1 | |
| cbriggsae | ccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaaggg | ||
| ************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_124925 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_184109 | ||
| ------------------------------------------------------------------------------------ | NM_013720 | ||
| ------------------------------------------------------------------------------------ | NM_001085471 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031809 | ||
| ------------------------------------------------------------------------------------ | NM_177595 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_031808 | ||
| ------------------------------------------------------------------------------------ | NM_204577 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001102968 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_061965 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_075282 | ||
| ------------------------------------------------------------------------------------ | NM_001122952 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001108816 | ||
| ------------------------------------------------------------------------------------ | NM_005197 | ||
| ------------------------------------------------------------------------------------ | NM_010905 | ||
| ------------------------------------------------------------------------------------ | NM_001122953 | ||
| ------------------------------------------------------------------------------------ | NM_067174 | ||
| cbriggsae | ((.(((...(((((.(((((((((........((((...((....)).)))).))))))))).)))))))).)) | 0.470 -24.60 |
| cbriggsae | chromosome:chrIII:12648685:12648758:-1 | Same_strand|Intronic_coding|NM_124925|AT5G55430 ## Opposite_strand|Intronic_non-coding|NM_013720|Mga ## Same_strand|Intronic_non-coding|NM_031808|Capn6 ## {Repeats: no} |
block3068 [novel_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.461 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 17 | 5arm | 15 | nd | 0.23 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---UUUCGAG---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --GTTTCGAGTGTGTGTGCGCCTT-------------------------------------------------- | 22 | 1 | |
| cbriggsae | ccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaaggg | ||
| ************************************************************************** | |||
| cbriggsae | ((.(((...(((((.(((((((((........((((...((....)).)))).))))))))).)))))))).)) | 0.470 -24.60 |
| cbriggsae | chromosome:chrUn:3464143:3464216:-1 | {Repeats: no} |
block3093 [novel_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.063 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 11 | 3arm | 49 | nd | 0.25 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------CGUUCGU--------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ----------------------------------------------------------GCGTTCGTGGTGTAATGGTC--- | 20 | 1 | |
| cbriggsae | gctgccgccgcgccaggccgctaatttatatacgacaaggcaaagaatcttgaagtgtGCGTTCGTGGTGTAATGGTCagc | ||
| ********************************************************************************* | |||
| cbriggsae | (((((((..((((((((.(((........((((..(((((.......)))))..))))))).)).))))))..))).)))) | 1.000 -26.10 |
| cbriggsae | chromosome:chrUn:4077989:4078069:-1 | {Repeats: no} |
block3372 [novel_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.461 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 17 | 5arm | 15 | nd | 0.23 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---UUUCGAG---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --GTTTCGAGTGTGTGTGCGCCTT-------------------------------------------------- | 22 | 1 | |
| cbriggsae | ccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaaggg | ||
| ************************************************************************** | |||
| cbriggsae | ((.(((...(((((.(((((((((........((((...((....)).)))).))))))))).)))))))).)) | 0.470 -24.60 |
| cbriggsae | chromosome:chrUn:879455:879528:1 | {Repeats: no} |
block3666 [novel_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.368 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 17 | 5arm | 15 | nd | 0.23 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---UUUCGAG---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --GTTTCGAGTGTGTGTGCGCCTT-------------------------------------------------- | 22 | 1 | |
| cbriggsae | ccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagatctcaacgatagggcgcgcttgcacgaaggg | ||
| ************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_071109 | ||
| ------------------------------------------------------------------------------------ | NM_072517 | ||
| cbriggsae | ((.(((...(((((.(((((((((........((((...((....)).)))).))))))))).)))))))).)) | 0.750 -24.60 |
| cbriggsae | chromosome:chrV:2478243:2478316:-1 | Same_strand|Intronic_coding|NM_071109|Y46H3A.4 ## Opposite_strand|Intronic_coding|NM_072517|srh-92 ## {Repeats: no} |
block3684 [novel_Multihit_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.461 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 17 | 5arm | 15 | nd | 0.23 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---UUUCGAG---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| --GTTTCGAGTGTGTGTGCGCCTT-------------------------------------------------- | 22 | 1 | |
| cbriggsae | ccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaaggg | ||
| ************************************************************************** | |||
| ------------------------------------------------------------------------------------ | NM_077734 | ||
| ------------------------------------------------------------------------------------ | NM_071252 | ||
| ------------------------------------------------------------------------------------ | NM_071278 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_071230 | ||
| ------------------------------------------------------------------------------------ | NM_074797 | ||
| cbriggsae | ((.(((...(((((.(((((((((........((((...((....)).)))).))))))))).)))))))).)) | 0.470 -24.60 |
| cbriggsae | chromosome:chrV:3791547:3791620:-1 | Opposite_strand|Intronic_coding|NM_077734|str-123 ## Same_strand|Intronic_coding|NM_071230|Y19D10B.2 ## {Repeats: no} |
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